| Literature DB >> 32936086 |
Liang Zhang1, Yue Qu2, Bo Jin2, Lu Jing3, Zhan Gao4, Zhanhua Liang3.
Abstract
BACKGROUND: Parkinson disease (PD) is one of the most common neurological diseases. At present, because the exact cause is still unclear, accurate diagnosis and progression monitoring remain challenging. In recent years, exploring the relationship between PD and speech impairment has attracted widespread attention in the academic world. Most of the studies successfully validated the effectiveness of some vocal features. Moreover, the noninvasive nature of speech signal-based testing has pioneered a new way for telediagnosis and telemonitoring. In particular, there is an increasing demand for artificial intelligence-powered tools in the digital health era.Entities:
Keywords: Parkinson disease; artificial intelligence; mobile health; mobile phone app; remote diagnosis; speech disorder
Year: 2020 PMID: 32936086 PMCID: PMC7527911 DOI: 10.2196/18689
Source DB: PubMed Journal: JMIR Med Inform
Collected syllables.
| International phonetic symbol | Duration (seconds) |
| [ɑ:] | 3 |
| [З:] | 3 |
| [i:] | 3 |
|
| 3 |
| [u:] | 3 |
Figure 1Equations 1-10. FN: false negative; FP: false positive; MAE: mean absolute error; MSE: mean square error; RMSE: root mean square error; TN: true negative; TP: true positive.
Figure 2Principle of the double-threshold method. N1: starting point; N2: ending point; T: upper threshold; T: lower threshold.
Dysphonia features.
| Classification and dysphonia features | Description | |
|
|
| |
|
| Mean of pitch | |
|
| Max of pitch | |
|
| Min of pitch | |
|
| Median of pitch | |
|
| SD of pitch | |
|
|
| |
|
| Jitter | Jitter |
|
| Jitter_abs | Absolute jitter |
|
| Jitter_PPQ5 | 5 adjacent points’ jitter |
|
| Jitter_rap | 3 adjacent points’ jitter |
|
| Jitter_ddp | Difference of 3 adjacent points’ jitter |
|
|
| |
|
| Shimmer | Shimmer: percentage |
|
| Shimmer_dB | Shimmer: decibels (dB) |
|
| Shimmer_APQ5 | 5 adjacent points’ shimmer |
|
| Shimmer_APQ3 | 3 adjacent points’ shimmer |
|
| Shimmer_dda | Difference of 3 adjacent points’ shimmer |
|
| Shimmer_APQ11 | 11 adjacent points’ shimmer |
|
|
| |
|
| HNR_mean | Mean of HNR |
|
| HNR_std | SD of HNR |
|
| NHR_mean | Mean of NHR |
|
| NHR_std | SD of NHR |
|
|
| |
|
| DFA | Detrended fluctuation analysis [ |
|
| RPDE | Recurrence period density entropy [ |
|
| D2 | Correlation dimension [ |
|
| PPE | Pitch period entropy [ |
Classification confusion matrix.
| Class | Predictive class | Predictive negative class |
| Actual positive class | True positive (TP) | False negative (FN) |
| Actual negative class | False positive (FP) | True negative (TN) |
Characteristics of three datasets from the University of California Irvine.
| Data characteristics | Dataset 1 | Dataset 2 | Dataset 3 | |
| Creation date (year/month/day) | 2008/06/26 | 2014/06/12 | 2009/10/29 | |
|
|
|
|
| |
|
| Parkinson disease | 23 | 48 | 42 |
|
| Non-Parkinson disease | 8 | 20 | 0 |
| Number of records (ie, samples) | 195 | 1208 | 5875 | |
| Number of features | 22 | 26 | 18 | |
| Task | Classification | Classification and regression | Regression | |
Classification results for the first set of data.
| Algorithm | Accuracy (%) | Precision (%) | Recall (%) | F1 score (%) |
| Support vector machine |
| 88.89 |
| 92.55 |
| Logistic regression | 85.71 | 89.97 | 91.32 | 90.18 |
| Neural network (single layer) | 88.68 | 91.16 | 94.26 | 92.45 |
| Neural network (double layer) | 88.63 | 92.55 | 93.38 |
|
| Naive Bayes | 69.24 |
| 62.37 | 75.21 |
aItalics represent the highest values.
Classification results for the second set of data.
| Algorithm | Accuracy, % | Precision, % | Recall, % | F1 score, % |
| Support vector machine | 66.71 | 66.37 |
| 73.98 |
| Logistic regression | 66.56 | 67.68 | 79.08 | 72.84 |
| Neural network (single layer) |
| 71.13 | 81.54 |
|
| Neural network (double layer) | 70.29 |
| 80.81 | 75.40 |
| Naive Bayes | 59.36 | 61.80 | 73.78 | 67.19 |
aItalics represent the highest values.
Regression results on the third dataset.
| Algorithm | Mean absolute error | Mean square error | Root mean square error |
| Linear regression | 8.0786 | 95.1344 | 9.7494 |
| Support vector machine |
|
|
|
| Least absolute shrinkage and selection operator | 8.0687 | 91.1600 | 9.7452 |
aItalics represent the best values.
Figure 3Linear regression fitting. The red line is the predicted value and the blue line is the true value. UPDRS: Unified Parkinson's Disease Rating Scale.
Figure 5Least absolute shrinkage and selection operator (LASSO) fitting. The red line is the predicted value and the blue line is the true value. UPDRS: Unified Parkinson's Disease Rating Scale.
Top five principal characteristics.
| Feature | Corresponding weighted value |
| Age | 2.84 |
| Harmonics-to-noise ratio mean | –2.66 |
| Absolute jitter | –2.18 |
| Detrended fluctuation analysis | 2.14 |
| Pitch period entropy | 1.51 |
Figure 6Architecture overview of the No Pa app system.
Figure 7Screen captures from the No Pa app showing four functional modules.