Literature DB >> 32936035

The Use of Quantitative Digital Pathology to Measure Proteoglycan and Glycosaminoglycan Expression and Accumulation in Healthy and Diseased Tissues.

A Sally Davis1, Mary Y Chang2,3, Jourdan E Brune2,3, Teal S Hallstrand4,3, Brian Johnson2, Sarah Lindhartsen2, Stephen M Hewitt5, Charles W Frevert2,4,3.   

Abstract

Advances in reagents, methodologies, analytic platforms, and tools have resulted in a dramatic transformation of the research pathology laboratory. These advances have increased our ability to efficiently generate substantial volumes of data on the expression and accumulation of mRNA, proteins, carbohydrates, signaling pathways, cells, and structures in healthy and diseased tissues that are objective, quantitative, reproducible, and suitable for statistical analysis. The goal of this review is to identify and present how to acquire the critical information required to measure changes in tissues. Included is a brief overview of two morphometric techniques, image analysis and stereology, and the use of artificial intelligence to classify cells and identify hidden patterns and relationships in digital images. In addition, we explore the importance of preanalytical factors in generating high-quality data. This review focuses on techniques we have used to measure proteoglycans, glycosaminoglycans, and immune cells in tissues using immunohistochemistry and in situ hybridization to demonstrate the various morphometric techniques. When performed correctly, quantitative digital pathology is a powerful tool that provides unbiased quantitative data that are difficult to obtain with other methods.

Entities:  

Keywords:  artificial intelligence; asthma; digital pathology; extracellular matrix; glycosaminoglycans; image analysis; immunohistochemistry; in situ hybridization; influenza; machine learning; proteoglycans; stereology

Mesh:

Substances:

Year:  2020        PMID: 32936035      PMCID: PMC7841698          DOI: 10.1369/0022155420959146

Source DB:  PubMed          Journal:  J Histochem Cytochem        ISSN: 0022-1554            Impact factor:   2.479


  76 in total

1.  Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections.

Authors:  S R Shi; M E Key; K L Kalra
Journal:  J Histochem Cytochem       Date:  1991-06       Impact factor: 2.479

2.  Antibodies and immunohistochemistry in extracellular matrix research.

Authors:  Anthony J Hayes; Clare E Hughes; Bruce Caterson
Journal:  Methods       Date:  2008-05       Impact factor: 3.608

3.  Practical considerations of image analysis and quantification of signal transduction IHC staining.

Authors:  Michael Grunkin; Jakob Raundahl; Niels T Foged
Journal:  Methods Mol Biol       Date:  2011

4.  Data, Information, and Knowledge.

Authors:  Stephen M Hewitt
Journal:  J Histochem Cytochem       Date:  2019-04       Impact factor: 2.479

5.  Deep Learning-A Technology With the Potential to Transform Health Care.

Authors:  Geoffrey Hinton
Journal:  JAMA       Date:  2018-09-18       Impact factor: 56.272

6.  Decreased biglycan expression and differential decorin localization in human abdominal aortic aneurysms.

Authors:  Achilleas D Theocharis; Nikos K Karamanos
Journal:  Atherosclerosis       Date:  2002-12       Impact factor: 5.162

Review 7.  Quantitative microscopy of the lung: a problem-based approach. Part 1: basic principles of lung stereology.

Authors:  Matthias Ochs; Christian Mühlfeld
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2013-04-26       Impact factor: 5.464

8.  Quantitative ultrasensitive bright-field RNA in situ hybridization with RNAscope.

Authors:  Hongwei Wang; Nan Su; Li-Chong Wang; Xingyong Wu; Son Bui; Allissa Nielsen; Hong-Thuy Vo; Yuling Luo; Xiao-Jun Ma
Journal:  Methods Mol Biol       Date:  2014

Review 9.  Proteoglycans as Immunomodulators of the Innate Immune Response to Lung Infection.

Authors:  Inkyung Kang; Mary Y Chang; Thomas N Wight; Charles W Frevert
Journal:  J Histochem Cytochem       Date:  2018-01-12       Impact factor: 2.479

Review 10.  Proteoglycan form and function: A comprehensive nomenclature of proteoglycans.

Authors:  Renato V Iozzo; Liliana Schaefer
Journal:  Matrix Biol       Date:  2015-02-18       Impact factor: 11.583

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  3 in total

1.  Type I Interferon Signaling Increases Versican Expression and Synthesis in Lung Stromal Cells During Influenza Infection.

Authors:  Jourdan E Brune; Mary Y Chang; William A Altemeier; Charles W Frevert
Journal:  J Histochem Cytochem       Date:  2021-10-19       Impact factor: 2.479

2.  Considerations for Whole-Slide Analysis of Murine Xenografts Experiments.

Authors:  Abigail R Bland; John C Ashton
Journal:  J Histochem Cytochem       Date:  2021-10       Impact factor: 4.137

3.  Candidate Glycoprotein Biomarkers for Canine Visceral Hemangiosarcoma and Validation Using Semi-Quantitative Lectin/Immunohistochemical Assays.

Authors:  Patharee Oungsakul; Eunju Choi; Alok K Shah; Ahmed Mohamed; Caroline O'Leary; David Duffy; Michelle M Hill; Helle Bielefeldt-Ohmann
Journal:  Vet Sci       Date:  2021-02-27
  3 in total

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