Literature DB >> 32935194

1H, 13C, 15 N backbone resonance assignment of the recognition lobe subdomain 3 (Rec3) from Streptococcus pyogenes CRISPR-Cas9.

Erin Skeens1, Kyle W East1, George P Lisi2.   

Abstract

Rec3 is a subdomain of the recognition (Rec) lobe within CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-associated protein Cas9 that is involved in nucleic acid binding and is critical to HNH endonuclease activation. Here, we report the backbone resonance assignments of an engineered construct of the Rec3 subdomain from Streptococcus pyogenes Cas9. We also analyze backbone chemical shift data to predict secondary structure and an overall fold that is consistent with that of Rec3 from the full-length S. pyogenes Cas9 protein.

Entities:  

Keywords:  CRISPR; Cas9; NMR assignments; Rec3; Recognition lobe

Mesh:

Year:  2020        PMID: 32935194      PMCID: PMC8635283          DOI: 10.1007/s12104-020-09977-0

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  29 in total

Review 1.  CRISPR-Cas9 Structures and Mechanisms.

Authors:  Fuguo Jiang; Jennifer A Doudna
Journal:  Annu Rev Biophys       Date:  2017-03-30       Impact factor: 12.981

Review 2.  Genome editing in cardiovascular diseases.

Authors:  Alanna Strong; Kiran Musunuru
Journal:  Nat Rev Cardiol       Date:  2016-09-09       Impact factor: 32.419

3.  1H, 13C, 15N backbone and side chain resonance assignment of the HNH nuclease from Streptococcus pyogenes CRISPR-Cas9.

Authors:  Helen B Belato; Kyle W East; George P Lisi
Journal:  Biomol NMR Assign       Date:  2019-08-03       Impact factor: 0.746

4.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

5.  Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics.

Authors:  Kyle W East; Jocelyn C Newton; Uriel N Morzan; Yogesh B Narkhede; Atanu Acharya; Erin Skeens; Gerwald Jogl; Victor S Batista; Giulia Palermo; George P Lisi
Journal:  J Am Chem Soc       Date:  2020-01-09       Impact factor: 15.419

6.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

7.  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Authors:  Woonghee Lee; Marco Tonelli; John L Markley
Journal:  Bioinformatics       Date:  2014-12-12       Impact factor: 6.937

Review 8.  CRISPR/Cas9 for Cancer Therapy: Hopes and Challenges.

Authors:  Marta Martinez-Lage; Pilar Puig-Serra; Pablo Menendez; Raul Torres-Ruiz; Sandra Rodriguez-Perales
Journal:  Biomedicines       Date:  2018-11-12

9.  CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Authors:  David S Wishart; David Arndt; Mark Berjanskii; Peter Tang; Jianjun Zhou; Guohui Lin
Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971

Review 10.  Off-target Effects in CRISPR/Cas9-mediated Genome Engineering.

Authors:  Xiao-Hui Zhang; Louis Y Tee; Xiao-Gang Wang; Qun-Shan Huang; Shi-Hua Yang
Journal:  Mol Ther Nucleic Acids       Date:  2015-11-17       Impact factor: 10.183

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