| Literature DB >> 32934653 |
Xiao Yan Chang1, Yan Wu1, Ying Jiang1, Peng Yan Wang1, Jie Chen1.
Abstract
An intraductal papillary mucinous neoplasm (IPMN) is a common pancreatic precursor lesion, and it often harbors mutations in KRAS, GNAS, and RNF43. To clarify the molecular profiles of IPMNs, we conducted mutation analysis of KRAS, GNAS, and RNF43 in 61 IPMN formalin-fixed, paraffin-embedded (FFPE) specimens. The mutation rates of codons 12, 13, and 61 in KRAS and codon 201 in GNAS were detected by Sanger sequencing. Next-generation sequencing was performed on RNF43, and the results were further verified by Sanger sequencing. We identified KRAS and GNAS mutations in 35 (57%) and 40 (66%) IPMN cases, respectively. GNAS mutations were significantly correlated with the morphologic subtype (P < 0.001) and were more prevalent in the intestinal subtype (93%) than in the gastric (55%) and pancreatobiliary subtypes (44%) but were absent in the oncocytic subtype. RNF43 mutations were found in 5 cases (8%), all of which occurred in high-grade dysplasia and invasive lesions (2/5 and 3/5). All 5 cases harboring RNF43 mutations also exhibited GNAS mutations. RNF43 mutations were associated with a worse prognosis in invasive IPMN patients (P = 0.002), while KRAS and GNAS mutations did not affect the prognosis of patients.Entities:
Year: 2020 PMID: 32934653 PMCID: PMC7479465 DOI: 10.1155/2020/1457452
Source DB: PubMed Journal: Gastroenterol Res Pract ISSN: 1687-6121 Impact factor: 2.260
PCR primers used for PCR amplification and Sanger sequencing.
| Gene | Mutation site | Primer |
|---|---|---|
|
| Codons 12 and 13 | Forward: AGGCCTGCTGAAAATGACTG |
| Reverse: ATCAAAGAATGGTCCTGCAC | ||
| Codon 61 | Forward: TCCCTTCTCAGGATTCCTACA | |
| Reverse: CAAAGAAAGCCCTCCCCAGT | ||
|
| Codon 201 | Forward: AGACCTTTGCTTTAGATTGGC |
| Reverse: CTTACTGGAAGTTGACTTTGTCC |
PCR primers used for validation of RNF43 mutation.
| Forward | Reverse | Chr start to end | Amplicon size |
|---|---|---|---|
| CTGCCCAATCAGGAATGCTAC | GAAGCCCGTGTATGGTATTTCA | 58415234-58415771 | 538 |
| CTGCCTCCACTACCTGTGTCC | AAACATGGGGACAAGAGAGCA | 58370823-58371248 | 426 |
| GACCCAGTGACCCCTTGCATA | TCACATGGGCCTTTTGGTTCT | 58363304-58363757 | 454 |
| CTGAGTGACTGGGAACGGAGT | AACTTCAGGCTGGTCCCTGAT | 58360628-58361035 | 408 |
| CTAAGGGAGTTGGGGGATGTC | TGGAGCAGTGTACAGCCCATA | 58360009-58360335 | 327 |
| TCCTTGATCCCCCAAACTCTG | TAGGCTGATGTCCGTGCAGTT | 58358315-58358955 | 641 |
| GGCTCTCTAACCCACAGTGC | CATCTCTGCTGTATCCTTCTCAGC | 58357349-58357950 | 602 |
| CACCTCCAATCCACCTCACAG | CCACTGGAACCGCTTTTTGTA | 58358084-58358518 | 435 |
Clinicopathological features of IPMN patients.
| Clinicopathological features |
| |
|---|---|---|
| Age (years) | Mean | 63.05 ± 9.55 |
| Sex | Male | 39 (64) |
| Female | 22 (36) | |
| Pancreatitis | 21 (34) | |
| Size (cm) | Mean | 3.96 ± 1.95 |
| Location | ||
| Head | 44 (72) | |
| Body and tail | 12 (20) | |
| Both | 5 (8) | |
| Imaging classification | ||
| Main duct | 36 (59) | |
| Branch duct | 15 (25) | |
| Both | 10 (16) | |
| Subtype | ||
| Gastric | 11 (18) | |
| Intestinal | 29 (48) | |
| Pancreatobiliary | 16 (26) | |
| Oncocytic | 5 (8) | |
| Dysplasia | ||
| Low | 25 (76) | |
| High | 8 (24) | |
| Infiltration | ||
| ≤2 cm | 17 (28) | |
| 2-≤4 cm | 8 (13) | |
| >4 cm | 3 (5) | |
| Differentiation of invasive carcinoma | ||
| High | 16 (26) | |
| Middle | 8 (13) | |
| Low | 4 (7) | |
| Extent of invasive carcinoma | ||
| Intrapancreatic | 12 (20) | |
| Extrapancreatic | 16 (26) | |
| Nerve invasion | 6 (10) | |
| Lymph node metastasis | 5 (8) |
Mutations of KRAS/GNAS/RNF43 identified in IPMN.
| Gene | Mutation | Amino acid |
|
|---|---|---|---|
|
| c.34G>C | p.G12R | 2 |
| c.34G>T | p.G12C | 2 | |
| c.35G>A | p.G12D | 12 | |
| c.35G>T | p.G12V | 11 | |
| c.34G>A/35G>A | p.G12N | 1 | |
| c.38G>A | p.G13D | 2 | |
| c.182A>G | p.Q61R | 5 | |
|
| |||
|
| c.601C>T | p.R201C | 22 |
| c.602G>A | p.R201H | 17 | |
| c.601C>T/c.602G>A | p.R201Y | 1 | |
|
| |||
|
| NM_017763:exon8:c.879delG | p.E293fs | 1 |
| NM_017763:exon7:c.700C>T | p.Q234X | 1 | |
| NM_017763:exon7:c.689delA | p.D230fs | 1 | |
| NM_017763:exon4:c.253-2A>T | 1 | ||
| NM_017763:exon9:c.952+15A>G | 1 | ||
| NM_017763:exon9:c.1093G>A | p.A365T | 3 | |
Figure 1Mutation status of KRAS/GNAS/RNF43 in 61 IPMNs.
Correlation between clinicopathological features and KRAS/GNAS/RNF43 mutation status in IPMN patients.
| Clinicopathological features |
|
|
| |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Wild type | Mutated | Mutated/total (%) |
| Wild type | Mutated | Mutated/total (%) |
| Wild type | Mutated | Mutated/total (%) |
| |
| No. of patients | 26 | 35 | 35/61 (57) | 21 | 40 | 40/61 (66) | 56 | 5 | 5/61 (8) | |||
| Age (mean, years) | 62.3 | 63.6 | 0.625☆ | 59.1 | 65.1 | 0.042☆¶ | 63.1 | 62.8 | 0.952☆ | |||
| Sex | ||||||||||||
| Male | 17 | 22 | 22/39 (56) | 0.839† | 12 | 27 | 27/39 (69) | 0.423† | 35 | 4 | 4/39 (10) | 0.645△ |
| Female | 9 | 13 | 13/22 (59) | 9 | 13 | 13/22 (59) | 21 | 1 | 1/22 (5) | |||
| Pancreatitis | ||||||||||||
| Yes | 8 | 13 | 13/21 (62) | 0.604† | 7 | 14 | 14/21 (67) | 0.896† | 21 | 0 | 0/21 (0) | 0.154△ |
| No | 18 | 22 | 22/40 (55) | 14 | 26 | 26/40 (65) | 35 | 5 | 5/40 (13) | |||
| Size (cm) | ||||||||||||
| ≤3 | 12 | 12 | 12/24 (50) | 0.376† | 8 | 16 | 16/24 (67) | 0.661† | 22 | 2 | 2/24 (8) | 1.000△ |
| >3-≤5 | 8 | 17 | 17/25 (68) | 10 | 15 | 15/25 (60) | 23 | 2 | 2/23 (9) | |||
| >5 | 6 | 6 | 6/12 (50) | 3 | 9 | 9/12 (75) | 11 | 1 | 1/12 (8) | |||
| Location | ||||||||||||
| Head | 19 | 25 | 25/44 (57) | 0.692△ | 16 | 28 | 28/44 (64) | 0.907△ | 40 | 4 | 4/44 (9) | 0.263△ |
| Body and tail | 4 | 8 | 8/12 (67) | 4 | 8 | 8/12 (67) | 12 | 0 | 0/12 (0) | |||
| Both | 3 | 2 | 2/5 (40) | 1 | 4 | 4/5 (80) | 4 | 1 | 1/5 (20) | |||
| Imaging classification | ||||||||||||
| Main duct | 17 | 19 | 19/36 (53) | 0.605† | 15 | 21 | 21/36 (58) | 0.316† | 34 | 2 | 2/36 (6) | 0.335△ |
| Branch duct | 6 | 9 | 9/15 (60) | 3 | 12 | 12/15 (80) | 14 | 1 | 1/15 (7) | |||
| Both | 3 | 7 | 7/10 (70) | 3 | 7 | 7/10 (70) | 8 | 2 | 2/10 (20) | |||
| Subtype | ||||||||||||
| Gastric | 4 | 7 | 7/11 (64) | 0.261△ | 5 | 6 | 6/11 (55) | <0.001△¶ | 11 | 0 | 0/11 (0) | 0.728△ |
| Intestinal | 10 | 19 | 19/29 (66) | 2 | 27 | 27/29 (93) | 25 | 4 | 4/29 (14) | |||
| Pancreatobiliary | 8 | 8 | 8/16 (50) | 9 | 7 | 7/16 (44) | 15 | 1 | 1/16 (6) | |||
| Oncocytic | 4 | 1 | 1/5 (20) | 5 | 0 | 0/5 (0) | 5 | 0 | 0/5 (0) | |||
| Dysplasia | ||||||||||||
| Low | 11 | 13 | 13/24 (54) | 0.532† | 7 | 17 | 17/24 (71) | 0.819† | 24 | 0 | 0/24 (0) | 0.092△ |
| High | 5 | 4 | 4/9 (44) | 3 | 6 | 6/9 (67) | 7 | 2 | 2/9 (22) | |||
| Infiltration | ||||||||||||
| Yes | 10 | 18 | 18/28 (64) | 0.315† | 11 | 17 | 17/28 (61) | 0.703† | 25 | 3 | 3/28 (11) | 0.421△ |
| No | 16 | 17 | 17/33 (52) | 10 | 23 | 23/33 (63) | 31 | 2 | 2/33 (6) | |||
| Differentiation of invasive carcinoma | ||||||||||||
| High | 7 | 9 | 9/16 (56) | 0.339△ | 3 | 13 | 13/16 (81) | 0.054△ | 13 | 3 | 3/16 (19) | 0.464△ |
| Intermediate | 1 | 7 | 7/8 (87.5) | 5 | 3 | 3/8 (38) | 8 | 0 | 0/8 (0) | |||
| Low | 2 | 2 | 2/4 (50) | 3 | 1 | 1/4 (25) | 4 | 0 | 0/4 (0) | |||
| Extent of invasive carcinoma | ||||||||||||
| Intrapancreatic | 4 | 8 | 8/12 (67) | 0.589† | 3 | 9 | 9/12 (75) | 0.295† | 11 | 1 | 1/12 (8) | 0.824△ |
| Extrapancreatic | 6 | 10 | 10/16 (63) | 8 | 8 | 8/16 (50) | 14 | 2 | 2/16 (13) | |||
| Nerve invasion | ||||||||||||
| Yes | 0 | 6 | 6/6 (100) | 0.082△ | 5 | 1 | 1/6 (17) | 0.029△¶ | 6 | 0 | 0/6 (0) | 0.637△ |
| No | 10 | 12 | 12/22 (55) | 6 | 16 | 16/22 (73) | 19 | 3 | 3/22 (14) | |||
| Lymph node metastasis | ||||||||||||
| Yes | 2 | 3 | 3/5 (60) | 1.000△ | 3 | 2 | 2/5 (40) | 0.505△ | 5 | 0 | 0/5 (0) | 0.770△ |
| No | 8 | 16 | 16/24 (67) | 8 | 16 | 16/24 (67) | 21 | 3 | 3/24 (13) | |||
| Correlation between status of | 0.979† | |||||||||||
| Correlation between status of | 0.641△ | |||||||||||
| Correlation between status of | 0.111△ | |||||||||||
☆ t-test. †Chi-square test. △Fisher's exact test. ¶Statistically significant (P < 0.05).
Figure 2Kaplan-Meier survival analysis of IPMN patients based on the mutation status of KRAS/GNAS/RNF43.