Literature DB >> 32933864

First transcriptome assembly of a newly discovered vent mussel, Gigantidas vrijenhoeki, at Onnuri Vent Field on the northern Central Indian Ridge.

Taewoo Ryu1, Jong Guk Kim2, Jimin Lee2, Ok Hwan Yu2, Seungshic Yum3, Dongsung Kim2, Seonock Woo4.   

Abstract

This is the first report of a transcriptome assembly of a newly discovered hydrothermal vent mussel, Gigantidas vrijenhoeki (Bivalvia: Mytilidae), on the Central Indian Ridge. Gigantidas vrijenhoeki was identified from material collected at the newly discovered Onnuri Vent Field (OVF) on the Central Indian Ridge in 2018, and was reported as a new species, distinct from another dominant hydrothermal vent mussel, Bathymodiolus marisindicus, in 2020. We sequenced the transcriptome of G. vrijenhoeki using the Illumina HiSeq X System. De novo assembly and analysis of the coding regions predicted 25,405 genes, 84.76% of which was annotated by public databases. The transcriptome of G. vrijenhoeki will be a valuable resource in studying the ecological and biological characteristics of this new species, which is distinct from other deep-sea mussels. These data should also support the investigation of the relationship between the environmental conditions of hydrothermal vents and the unique distribution of G. vrijenhoeki in the OVF of the Central Indian Ridge.
Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Gigantidas vrijenhoeki; Hydrothermal vent; Mussel; Onnuri Vent Field; Transcriptome

Year:  2020        PMID: 32933864     DOI: 10.1016/j.margen.2020.100819

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  1 in total

1.  Transcriptomic Diversity in the Livers of South African Sardines Participating in the Annual Sardine Run.

Authors:  Arsalan Emami-Khoyi; Rynhardt Le Roux; Matthew G Adair; Daniela M Monsanto; Devon C Main; Shilpa P Parbhu; Claudia M Schnelle; Carl D van der Lingen; Bettine Jansen van Vuuren; Peter R Teske
Journal:  Genes (Basel)       Date:  2021-03-04       Impact factor: 4.096

  1 in total

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