Literature DB >> 32929436

The nanomechanics of individual proteins.

Marc Mora1, Andrew Stannard, Sergi Garcia-Manyes.   

Abstract

Mechanical forces regulate a large variety of cellular functionalities, encompassing e.g. motility, differentiation and muscle contractility. To adapt to the dynamic change in mechanical stress, the constitutive individual proteins need to reversibly stretch and recoil over long periods of time. Yet, the molecular mechanisms controlling the mechanical unfolding and refolding of proteins cannot be accessed by protein folding biochemistry experiments conducted in the bulk, because they cannot typically apply forces to individual proteins. The advent of single-molecule nanomechanical techniques, often combined with bespoke protein engineering strategies, has enabled monitoring the conformational dynamics of proteins under force with unprecedented length-, time- and force-resolution. This review focuses on the fundamental operational principles of the main single-molecule nanomechanical techniques, placing particular emphasis on the most common analytical approaches used to extract information directly from the experiments. The breadth of enabling applications highlights the most exciting and promising outputs from the nanomechanics field to date.

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Year:  2020        PMID: 32929436     DOI: 10.1039/d0cs00426j

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  11 in total

1.  A Single-Molecule Strategy to Capture Non-native Intramolecular and Intermolecular Protein Disulfide Bridges.

Authors:  Marc Mora; Stephanie Board; Olivier Languin-Cattoën; Laura Masino; Guillaume Stirnemann; Sergi Garcia-Manyes
Journal:  Nano Lett       Date:  2022-05-12       Impact factor: 12.262

2.  Single-Molecule Force Spectroscopy Reveals Stability of mitoNEET and its [2Fe2Se] Cluster in Weakly Acidic and Basic Solutions.

Authors:  Jing-Yuan Nie; Guo-Bin Song; Yi-Bing Deng; Peng Zheng
Journal:  ChemistryOpen       Date:  2022-05       Impact factor: 2.630

3.  Molecular Fluctuations as a Ruler of Force-Induced Protein Conformations.

Authors:  Andrew Stannard; Marc Mora; Amy E M Beedle; Marta Castro-López; Stephanie Board; Sergi Garcia-Manyes
Journal:  Nano Lett       Date:  2021-03-25       Impact factor: 11.189

4.  Out-of-Equilibrium Biophysical Chemistry: The Case for Multidimensional, Integrated Single-Molecule Approaches.

Authors:  Narendar Kolimi; Ashok Pabbathi; Nabanita Saikia; Feng Ding; Hugo Sanabria; Joshua Alper
Journal:  J Phys Chem B       Date:  2021-09-10       Impact factor: 3.466

5.  Cas12a target search and cleavage on force-stretched DNA.

Authors:  Marialucrezia Losito; Quentin M Smith; Matthew D Newton; Maria Emanuela Cuomo; David S Rueda
Journal:  Phys Chem Chem Phys       Date:  2021-12-08       Impact factor: 3.676

6.  Correlating single-molecule rupture mechanics with cell population adhesion by yeast display.

Authors:  Mariana Sá Santos; Haipei Liu; Valentin Schittny; Rosario Vanella; Michael A Nash
Journal:  Biophys Rep       Date:  2022-03-09

Review 7.  Methods to study folding of alpha-helical membrane proteins in lipids.

Authors:  Nicola J Harris; Grant A Pellowe; Laura R Blackholly; Samuel Gulaidi-Breen; Heather E Findlay; Paula J Booth
Journal:  Open Biol       Date:  2022-07-20       Impact factor: 7.124

8.  Understanding the role of mechanics in nucleocytoplasmic transport.

Authors:  Ion Andreu; Ignasi Granero-Moya; Sergi Garcia-Manyes; Pere Roca-Cusachs
Journal:  APL Bioeng       Date:  2022-06-29

9.  Acetic Acid Enables Precise Tailoring of the Mechanical Behavior of Protein-Based Hydrogels.

Authors:  Marina Slawinski; Maria Kaeek; Yair Rajmiel; Luai R Khoury
Journal:  Nano Lett       Date:  2022-08-26       Impact factor: 12.262

10.  Search and processing of Holliday junctions within long DNA by junction-resolving enzymes.

Authors:  Artur P Kaczmarczyk; Anne-Cécile Déclais; Matthew D Newton; Simon J Boulton; David M J Lilley; David S Rueda
Journal:  Nat Commun       Date:  2022-10-07       Impact factor: 17.694

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