Literature DB >> 32923906

Pathogenic Germline DNA Repair Gene and HOXB13 Mutations in Men With Metastatic Prostate Cancer.

Julie L Boyle1,2, Andrew W Hahn1, Ashley L Kapron1, Wendy Kohlmann2, Samantha E Greenberg2, Timothy J Parnell2, Craig C Teerlink1,3, Benjamin L Maughan1,2, Bing-Jian Feng2,4, Lisa Cannon-Albright1,2,5, Neeraj Agarwal1,2, Kathleen A Cooney6.   

Abstract

PURPOSE: Germline mutations in DNA repair (DR) genes and susceptibility genes CDKN2A and HOXB13 have previously been associated with prostate cancer (PC) incidence and/or progression. However, the role and prevalence of this class of mutations in metastatic PC (mPC) are not fully understood. PATIENTS AND METHODS: To evaluate the frequency of pathogenic/likely pathogenic germline variants (PVs/LPVs) in men with mPC, this study sequenced 38 DR genes, CDKN2A, and HOXB13 in a predominantly white cohort of 317 patients with mPC. A PC registry at the University of Utah was used for patient sample acquisition and retrospective clinical data collection. Deep target sequencing allowed for germline and copy number variant analyses. Validated PVs/LPVs were integrated with clinical and demographic data for statistical correlation analyses.
RESULTS: All pathogenic variants were found in men self-reported as white, with a carrier frequency of 8.5% (DR genes, 7.3%; CDKN2A/HOXB13, 1.2%). Consistent with previous reports, mutations were most frequently identified in the breast cancer susceptibility gene BRCA2. It was also found that 50% of identified PVs/LPVs were categorized as founder mutations with European origins. Correlation analyses did not support a trend toward more advanced or earlier-onset disease in comparisons between carriers and noncarriers of deleterious DR or HOXB13 G84E mutations.
CONCLUSION: These findings demonstrate a lower prevalence of germline PVs/LPVs in an unselected, predominantly white mPC cohort than previously reported, which may have implications for the design of clinical trials testing targeted therapies. Larger studies in broad and diverse populations are needed to more accurately define the prevalence of germline mutations in men with mPC.
© 2020 by American Society of Clinical Oncology.

Entities:  

Year:  2020        PMID: 32923906      PMCID: PMC7446531          DOI: 10.1200/PO.19.00284

Source DB:  PubMed          Journal:  JCO Precis Oncol        ISSN: 2473-4284


  60 in total

1.  Spatial patterns of localized-stage prostate cancer incidence among white and black men in the southeastern United States, 1999-2001.

Authors:  Sean F Altekruse; Lan Huang; James E Cucinelli; Timothy S McNeel; Kristen M Wells; M Norman Oliver
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2010-05-25       Impact factor: 4.254

2.  High prevalence and breast cancer predisposing role of the BLM c.1642 C>T (Q548X) mutation in Russia.

Authors:  Anna P Sokolenko; Aglaya G Iyevleva; Elena V Preobrazhenskaya; Nathalia V Mitiushkina; Svetlana N Abysheva; Evgeny N Suspitsin; Ekatherina Sh Kuligina; Tatiana V Gorodnova; Werner Pfeifer; Alexandr V Togo; Elena A Turkevich; Alexandr O Ivantsov; Dmitry V Voskresenskiy; Georgy D Dolmatov; Elena M Bit-Sava; Dmitry E Matsko; Vladimir F Semiglazov; Iduna Fichtner; Alexey A Larionov; Sergey G Kuznetsov; Antonis C Antoniou; Evgeny N Imyanitov
Journal:  Int J Cancer       Date:  2011-10-20       Impact factor: 7.396

3.  Germline DNA-repair Gene Mutations and Outcomes in Men with Metastatic Castration-resistant Prostate Cancer Receiving First-line Abiraterone and Enzalutamide.

Authors:  Emmanuel S Antonarakis; Changxue Lu; Brandon Luber; Chao Liang; Hao Wang; Yan Chen; John L Silberstein; Danilo Piana; Zhao Lai; Yidong Chen; William B Isaacs; Jun Luo
Journal:  Eur Urol       Date:  2018-02-10       Impact factor: 20.096

4.  From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

Authors:  Geraldine A Van der Auwera; Mauricio O Carneiro; Christopher Hartl; Ryan Poplin; Guillermo Del Angel; Ami Levy-Moonshine; Tadeusz Jordan; Khalid Shakir; David Roazen; Joel Thibault; Eric Banks; Kiran V Garimella; David Altshuler; Stacey Gabriel; Mark A DePristo
Journal:  Curr Protoc Bioinformatics       Date:  2013

5.  Confirmation of the HOXB13 G84E germline mutation in familial prostate cancer.

Authors:  Joan P Breyer; T Grant Avritt; Kate M McReynolds; William D Dupont; Jeffrey R Smith
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2012-06-19       Impact factor: 4.254

6.  Germline mutations in HOXB13 and prostate-cancer risk.

Authors:  Charles M Ewing; Anna M Ray; Ethan M Lange; Kimberly A Zuhlke; Christiane M Robbins; Waibhav D Tembe; Kathleen E Wiley; Sarah D Isaacs; Dorhyun Johng; Yunfei Wang; Chris Bizon; Guifang Yan; Marta Gielzak; Alan W Partin; Vijayalakshmi Shanmugam; Tyler Izatt; Shripad Sinari; David W Craig; S Lilly Zheng; Patrick C Walsh; James E Montie; Jianfeng Xu; John D Carpten; William B Isaacs; Kathleen A Cooney
Journal:  N Engl J Med       Date:  2012-01-12       Impact factor: 91.245

7.  Treatment Outcomes and Tumor Loss of Heterozygosity in Germline DNA Repair-deficient Prostate Cancer.

Authors:  Matti Annala; Werner J Struss; Evan W Warner; Kevin Beja; Gillian Vandekerkhove; Amanda Wong; Daniel Khalaf; Irma-Liisa Seppälä; Alan So; Gregory Lo; Rahul Aggarwal; Eric J Small; Matti Nykter; Martin E Gleave; Kim N Chi; Alexander W Wyatt
Journal:  Eur Urol       Date:  2017-03-01       Impact factor: 20.096

8.  Imputation of the rare HOXB13 G84E mutation and cancer risk in a large population-based cohort.

Authors:  Thomas J Hoffmann; Lori C Sakoda; Ling Shen; Eric Jorgenson; Laurel A Habel; Jinghua Liu; Mark N Kvale; Maryam M Asgari; Yambazi Banda; Douglas Corley; Lawrence H Kushi; Charles P Quesenberry; Catherine Schaefer; Stephen K Van Den Eeden; Neil Risch; John S Witte
Journal:  PLoS Genet       Date:  2015-01-28       Impact factor: 5.917

9.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

10.  Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.

Authors:  Yufei Wang; James D McKay; Thorunn Rafnar; Zhaoming Wang; Maria N Timofeeva; Peter Broderick; Xuchen Zong; Marina Laplana; Yongyue Wei; Younghun Han; Amy Lloyd; Manon Delahaye-Sourdeix; Daniel Chubb; Valerie Gaborieau; William Wheeler; Nilanjan Chatterjee; Gudmar Thorleifsson; Patrick Sulem; Geoffrey Liu; Rudolf Kaaks; Marc Henrion; Ben Kinnersley; Maxime Vallée; Florence LeCalvez-Kelm; Victoria L Stevens; Susan M Gapstur; Wei V Chen; David Zaridze; Neonilia Szeszenia-Dabrowska; Jolanta Lissowska; Peter Rudnai; Eleonora Fabianova; Dana Mates; Vladimir Bencko; Lenka Foretova; Vladimir Janout; Hans E Krokan; Maiken Elvestad Gabrielsen; Frank Skorpen; Lars Vatten; Inger Njølstad; Chu Chen; Gary Goodman; Simone Benhamou; Tonu Vooder; Kristjan Välk; Mari Nelis; Andres Metspalu; Marcin Lener; Jan Lubiński; Mattias Johansson; Paolo Vineis; Antonio Agudo; Francoise Clavel-Chapelon; H Bas Bueno-de-Mesquita; Dimitrios Trichopoulos; Kay-Tee Khaw; Mikael Johansson; Elisabete Weiderpass; Anne Tjønneland; Elio Riboli; Mark Lathrop; Ghislaine Scelo; Demetrius Albanes; Neil E Caporaso; Yuanqing Ye; Jian Gu; Xifeng Wu; Margaret R Spitz; Hendrik Dienemann; Albert Rosenberger; Li Su; Athena Matakidou; Timothy Eisen; Kari Stefansson; Angela Risch; Stephen J Chanock; David C Christiani; Rayjean J Hung; Paul Brennan; Maria Teresa Landi; Richard S Houlston; Christopher I Amos
Journal:  Nat Genet       Date:  2014-06-01       Impact factor: 38.330

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  2 in total

1.  DNA Repair Pathways and Their Association With Lethal Prostate Cancer in African American and European American Men.

Authors:  Anna Plym; Miklós Dióssy; Zoltan Szallasi; Oliver Sartor; Jonathan Silberstein; Isaac J Powell; Timothy R Rebbeck; Kathryn L Penney; Lorelei A Mucci; Mark M Pomerantz; Adam S Kibel
Journal:  JNCI Cancer Spectr       Date:  2021-12-27

2.  Clinical Germline Testing Results of Men With Prostate Cancer: Patient-Level Factors and Implications of NCCN Guideline Expansion.

Authors:  Samantha E Greenberg; Trevor C Hunt; Jacob P Ambrose; William T Lowrance; Christopher B Dechet; Brock B O'Neil; Jonathan D Tward
Journal:  JCO Precis Oncol       Date:  2021-03-23
  2 in total

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