Literature DB >> 32920122

Myocardial infarction biomarker discovery with integrated gene expression, pathways and biological networks analysis.

Abdulrahman Mujalli1, Babajan Banaganapalli2, Nuha Mohammad Alrayes3, Noor A Shaik2, Ramu Elango2, Jumana Y Al-Aama2.   

Abstract

Myocardial infarction (MI) is the most prevalent coronary heart disease caused by the complex molecular interactions between multiple genes and environment. Here, we aim to identify potential biomarkers for the disease development and for prognosis of MI. We have used gene expression dataset (GSE66360) generated from 51 healthy controls and 49 patients experiencing acute MI and analyzed the differentially expressed genes (DEGs), protein-protein interactions (PPI), gene network-clusters to annotate the candidate pathways relevant to MI pathogenesis. Bioinformatic analysis revealed 810 DEGs. Their functional annotations have captured several MI targeting biological processes and pathways like immune response, inflammation and platelets degranulation. PPI network identify seventeen hub and bottleneck genes, whose involvement in MI was further confirmed by DisGeNET database. OpenTarget Platform reveal unique bottleneck genes as potential target for MI. Our findings identify several potential biomarkers associated with early stage MI providing a new insight into molecular mechanism underlying the disease.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bioinformatics; Biomarkers; Differentially expressed genes; Immune response; Myocardial infarction

Year:  2020        PMID: 32920122     DOI: 10.1016/j.ygeno.2020.09.004

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  5 in total

1.  LncRNA XIST facilitates hypoxia-induced myocardial cell injury through targeting miR-191-5p/TRAF3 axis.

Authors:  Yonghong Wang; Yanfei Liu; Aike Fei; Zaixin Yu
Journal:  Mol Cell Biochem       Date:  2022-03-07       Impact factor: 3.396

2.  Identifying significant genes and functionally enriched pathways in familial hypercholesterolemia using integrated gene co-expression network analysis.

Authors:  Zuhier Awan; Nuha Alrayes; Zeenath Khan; Majid Almansouri; Abdulhadi Ibrahim Hussain Bima; Haifa Almukadi; Hussam Ibrahim Kutbi; Preetha Jayasheela Shetty; Noor Ahmad Shaik; Babajan Banaganapalli
Journal:  Saudi J Biol Sci       Date:  2022-02-09       Impact factor: 4.052

3.  Identification of miRNA-mRNA-TFs regulatory network and crucial pathways involved in asthma through advanced systems biology approaches.

Authors:  Noor Ahmad Shaik; Khalidah Nasser; Arif Mohammed; Abdulrahman Mujalli; Ahmad A Obaid; Ashraf A El-Harouni; Ramu Elango; Babajan Banaganapalli
Journal:  PLoS One       Date:  2022-10-20       Impact factor: 3.752

4.  Exome Sequencing Identifies the Extremely Rare ITGAV and FN1 Variants in Early Onset Inflammatory Bowel Disease Patients.

Authors:  Huda Husain Al-Numan; Rana Mohammed Jan; Najla Bint Saud Al-Saud; Omran M Rashidi; Nuha Mohammad Alrayes; Hadeel A Alsufyani; Abdulrahman Mujalli; Noor Ahmad Shaik; Mahmoud Hisham Mosli; Ramu Elango; Omar I Saadah; Babajan Banaganapalli
Journal:  Front Pediatr       Date:  2022-05-26       Impact factor: 3.569

5.  Comprehensive Analysis of circRNA-miRNA-mRNA Regulatory Network and Novel Potential Biomarkers in Acute Myocardial Infarction.

Authors:  Jiahe Wu; Chenze Li; Zhe Lei; Huanhuan Cai; Yushuang Hu; Yanfang Zhu; Tong Zhang; Haoyan Zhu; Jianlei Cao; Xiaorong Hu
Journal:  Front Cardiovasc Med       Date:  2022-07-07
  5 in total

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