Literature DB >> 32919307

Functional roles of microbial cell-to-cell heterogeneity and emerging technologies for analysis and control.

Nadia Maria Vieira Sampaio1, Mary J Dunlop2.   

Abstract

Clonal cell populations often display significant cell-to-cell phenotypic heterogeneity, even when maintained under constant external conditions. This variability can result from the inherently stochastic nature of transcription and translation processes, which leads to varying numbers of transcripts and proteins per cell. Here, we showcase studies that reveal links between stochastic cellular events and biological functions in isogenic microbial populations. Then, we highlight emerging tools from engineering, computation, and synthetic and molecular biology that enable precise measurement, control, and analysis of gene expression noise in microorganisms. The capabilities offered by this sophisticated toolbox will shape future directions in the field and generate insight into the behavior of living systems at the single-cell level.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32919307      PMCID: PMC7722170          DOI: 10.1016/j.mib.2020.08.002

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  77 in total

1.  Robust growth of Escherichia coli.

Authors:  Ping Wang; Lydia Robert; James Pelletier; Wei Lien Dang; Francois Taddei; Andrew Wright; Suckjoon Jun
Journal:  Curr Biol       Date:  2010-05-27       Impact factor: 10.834

2.  Noise propagation in gene networks.

Authors:  Juan M Pedraza; Alexander van Oudenaarden
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

3.  Tunability and noise dependence in differentiation dynamics.

Authors:  Gürol M Süel; Rajan P Kulkarni; Jonathan Dworkin; Jordi Garcia-Ojalvo; Michael B Elowitz
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

Review 4.  The Potential for Convergence between Synthetic Biology and Bioelectronics.

Authors:  John Selberg; Marcella Gomez; Marco Rolandi
Journal:  Cell Syst       Date:  2018-09-19       Impact factor: 10.304

5.  Bet-hedging during bacterial diauxic shift.

Authors:  Ana Solopova; Jordi van Gestel; Franz J Weissing; Herwig Bachmann; Bas Teusink; Jan Kok; Oscar P Kuipers
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-05       Impact factor: 11.205

Review 6.  Functional roles of pulsing in genetic circuits.

Authors:  Joe H Levine; Yihan Lin; Michael B Elowitz
Journal:  Science       Date:  2013-12-06       Impact factor: 47.728

7.  Stochastic pulse regulation in bacterial stress response.

Authors:  James C W Locke; Jonathan W Young; Michelle Fontes; María Jesús Hernández Jiménez; Michael B Elowitz
Journal:  Science       Date:  2011-10-06       Impact factor: 47.728

8.  A synthetic system for asymmetric cell division in Escherichia coli.

Authors:  Sara Molinari; David L Shis; Shyam P Bhakta; James Chappell; Oleg A Igoshin; Matthew R Bennett
Journal:  Nat Chem Biol       Date:  2019-08-12       Impact factor: 15.040

9.  MMHelper: An automated framework for the analysis of microscopy images acquired with the mother machine.

Authors:  Ashley Smith; Jeremy Metz; Stefano Pagliara
Journal:  Sci Rep       Date:  2019-07-12       Impact factor: 4.379

10.  Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software.

Authors:  Matthias Kaiser; Florian Jug; Thomas Julou; Siddharth Deshpande; Thomas Pfohl; Olin K Silander; Gene Myers; Erik van Nimwegen
Journal:  Nat Commun       Date:  2018-01-15       Impact factor: 14.919

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  5 in total

1.  Microbial single-cell RNA sequencing by split-pool barcoding.

Authors:  Anna Kuchina; Leandra M Brettner; Luana Paleologu; Charles M Roco; Alexander B Rosenberg; Alberto Carignano; Ryan Kibler; Matthew Hirano; R William DePaolo; Georg Seelig
Journal:  Science       Date:  2020-12-17       Impact factor: 47.728

2.  Dynamic gene expression and growth underlie cell-to-cell heterogeneity in Escherichia coli stress response.

Authors:  Nadia M V Sampaio; Caroline M Blassick; Virgile Andreani; Jean-Baptiste Lugagne; Mary J Dunlop
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-28       Impact factor: 12.779

Review 3.  Senescence in Bacteria and Its Underlying Mechanisms.

Authors:  Ulrich Karl Steiner
Journal:  Front Cell Dev Biol       Date:  2021-06-18

4.  Heterogeneous Flagellar Expression in Single Salmonella Cells Promotes Diversity in Antibiotic Tolerance.

Authors:  Zhihui Lyu; Angela Yang; Patricia Villanueva; Abhyudai Singh; Jiqiang Ling
Journal:  mBio       Date:  2021-09-28       Impact factor: 7.867

5.  New insights into phenotypic heterogeneity for the distinct lipid accumulation of Schizochytrium sp. H016.

Authors:  Zhendong Bao; Yuanmin Zhu; Kai Zhang; Yumei Feng; Meng Zhang; Ruili Li; Longjiang Yu
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-03-25
  5 in total

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