Literature DB >> 32916258

Identification of angiotensin-converting enzyme 2 (ACE2) protein as the potential biomarker in SARS-CoV-2 infection-related lung cancer using computational analyses.

Abdus Samad1, Tamanna Jafar2, Jahirul Hasnat Rafi2.   

Abstract

COVID-19 is a pandemic that began to spread worldwide caused by SARS-CoV-2. Lung cancer patients are more susceptible to SARS-CoV-2 infection. The SARS-CoV-2 enters into the host by the ACE2 receptor. Thus, ACE2 is the key to understand the mechanism of SARS-CoV-2 infection. However, the lack of knowledge about the biomarker of COVID-19 warrants the development of ACE2 biomarkers. The analysis of ACE2 expression in lung cancer was performed using The Cancer Genome Atlas (TCGA). Therefore, we investigated the prognosis, clinical characteristics, and mutational analysis of lung cancer. We also analyzed the shared proteins between the COVID-19 and lung cancer, protein-protein interactions, gene-miRNAs, gene-transcription factors (TFs), and the signaling pathway. Finally, we compared the mRNA expression of ACE2 and its co-expressed proteins using the TCGA. The up-regulation of ACE2 in lung adenocarcinoma (LUAD) and lung squamous carcinoma (LUSC) was found irrespective of gender and age. We found the low survival rate in high expression of ACE2 in lung cancer patients and 16 mutational positions. The functional assessment of targeted 12,671, 3107, and 29 positive genes were found in COVID-19 disease, LUAD, and LUSC, respectively. Then, we identified eight common genes that interact with 20 genes, 219 miRNAs, and 16 TFs. The common genes performed the mRNA expression in lung cancer, which proved the ACE2 is the best potential biomarker compared to co-expressed genes. This study uncovers the relationship between COVID-19 disease and lung cancer. We identified ACE2 and also its co-expressed proteins are the potential biomarker and therapy as the current COVID-19 disease and lung cancer.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ACE2; COVID-19; Lung cancer; Potential biomarker; Relationship of lung cancer and COVID-19; mRNA expression analysis

Year:  2020        PMID: 32916258     DOI: 10.1016/j.ygeno.2020.09.002

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  11 in total

1.  Expression of SARS-COV-2 cell receptor gene ACE2 is associated with immunosuppression and metabolic reprogramming in lung adenocarcinoma based on bioinformatics analyses of gene expression profiles.

Authors:  Md Nazim Uddin; Rehana Akter; Mengyuan Li; Zeinab Abdelrahman
Journal:  Chem Biol Interact       Date:  2021-01-07       Impact factor: 5.192

2.  Renin-angiotensin system blockade on angiotensin-converting enzyme 2 and TMPRSS2 in human type II pneumocytes.

Authors:  Mauro G Silva; Nora L Falcoff; Gerardo R Corradi; José Alfie; Rolando F Seguel; Gabriela C Tabaj; Laura I Iglesias; Myriam Nuñez; Gabriela R Guman; Mariela M Gironacci
Journal:  Life Sci       Date:  2022-01-12       Impact factor: 5.037

3.  Bioinformatics approaches identified dasatinib and bortezomib inhibit the activity of MCM7 protein as a potential treatment against human cancer.

Authors:  Abdus Samad; Md Amdadul Huq; Md Shahedur Rahman
Journal:  Sci Rep       Date:  2022-01-27       Impact factor: 4.379

4.  Identification of the susceptibility genes for COVID-19 in lung adenocarcinoma with global data and biological computation methods.

Authors:  Li Gao; Guo-Sheng Li; Jian-Di Li; Juan He; Yu Zhang; Hua-Fu Zhou; Jin-Liang Kong; Gang Chen
Journal:  Comput Struct Biotechnol J       Date:  2021-11-20       Impact factor: 7.271

5.  GC-MS analysis of phytoconstituents from Ruellia prostrata and Senna tora and identification of potential anti-viral activity against SARS-CoV-2.

Authors:  Rahat Alam; Raihan Rahman Imon; Md Enamul Kabir Talukder; Shahina Akhter; Md Alam Hossain; Foysal Ahammad; Md Mashiar Rahman
Journal:  RSC Adv       Date:  2021-12-17       Impact factor: 4.036

6.  Analysis of SARS-CoV-2 infection associated cell entry proteins ACE2, CD147, PPIA, and PPIB in datasets from non SARS-CoV-2 infected neuroblastoma patients, as potential prognostic and infection biomarkers in neuroblastoma.

Authors:  Brandon Bergsneider; Elise Bailey; Yusuf Ahmed; Namrata Gogineni; Derek Huntley; Ximena Montano
Journal:  Biochem Biophys Rep       Date:  2021-07-19

7.  SARS-CoV-2 infection studies in lung organoids identify TSPAN8 as novel mediator.

Authors:  Lisiena Hysenaj; Samantha Little; Kayla Kulhanek; Oghenekevwe M Gbenedio; Lauren Rodriguez; Alan Shen; Jean-Christophe Lone; Leonard C Lupin-Jimenez; Luke R Bonser; Nina K Serwas; Kriti Bahl; Eran Mick; Jack Z Li; Vivianne W Ding; Shotaro Matsumoto; Mazharul Maishan; Camille Simoneau; Gabriela Fragiadakis; David M Jablons; Charles R Langelier; Michael Matthay; Melanie Ott; Matthew Krummel; Alexis J Combes; Anita Sil; David J Erle; Johannes R Kratz; Jeroen P Roose
Journal:  bioRxiv       Date:  2021-06-02

8.  SARS-CoV-2 (COVID-19) Adhesion Site Protein Upregulation in Small Airways, Type 2 Pneumocytes, and Alveolar Macrophages of Smokers and COPD - Possible Implications for Interstitial Fibrosis.

Authors:  Samuel James Brake; Mathew Suji Eapen; Kielan Darcy McAlinden; James Markos; Greg Haug; Josie Larby; Collin Chia; Ashutosh Hardikar; Gurpreet Kaur Singhera; Tillie L Hackett; Wenying Lu; Sukhwinder Singh Sohal
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2022-01-11

9.  Angiotensin-Converting Enzyme 2 Protein Is Overexpressed in a Wide Range of Human Tumour Types: A Systematic Tissue Microarray Study on >15,000 Tumours.

Authors:  Jan Meiners; Kristina Jansen; Natalia Gorbokon; Franziska Büscheck; Andreas M Luebke; Martina Kluth; Claudia Hube-Magg; Doris Höflmayer; Sören Weidemann; Christoph Fraune; Katharina Möller; Christian Bernreuther; Patrick Lebok; Anne Menz; Frank Jacobsen; Till Clauditz; Guido Sauter; Ria Uhlig; Waldemar Wilczak; Jakob Izbicki; Daniel Perez; Sarah Minner; Eike Burandt; Till Krech; Andreas Marx; Ronald Simon; Stefan Steurer
Journal:  Biomedicines       Date:  2021-12-03

10.  Transporter associated with antigen processing 1 (TAP1) expression and prognostic analysis in breast, lung, liver, and ovarian cancer.

Authors:  Anika Tabassum; Rahat Alam; Md Nazmus Samdani; Tarak Chandra Dhali; Foysal Ahammad; Abdus Samad; Tomasz M Karpiński
Journal:  J Mol Med (Berl)       Date:  2021-05-28       Impact factor: 4.599

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