Literature DB >> 32912998

The emergence of SARS-CoV-2 in Europe and North America.

Michael Worobey1, Jonathan Pekar2,3, Brendan B Larsen4, Martha I Nelson5, Verity Hill6, Jeffrey B Joy7,8,9, Andrew Rambaut6, Marc A Suchard10,11,12, Joel O Wertheim13, Philippe Lemey14.   

Abstract

Accurate understanding of the global spread of emerging viruses is critical for public health responses and for anticipating and preventing future outbreaks. Here we elucidate when, where, and how the earliest sustained severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission networks became established in Europe and North America. Our results suggest that rapid early interventions successfully prevented early introductions of the virus from taking hold in Germany and the United States. Other, later introductions of the virus from China to both Italy and Washington state, United States, founded the earliest sustained European and North America transmission networks. Our analyses demonstrate the effectiveness of public health measures in preventing onward transmission and show that intensive testing and contact tracing could have prevented SARS-CoV-2 outbreaks from becoming established in these regions.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32912998     DOI: 10.1126/science.abc8169

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  122 in total

1.  Evolution and Epidemiology of SARS-CoV-2 Virus.

Authors:  Yu-Nong Gong; Kuo-Ming Lee; Shin-Ru Shih
Journal:  Methods Mol Biol       Date:  2022

Review 2.  The emergence, genomic diversity and global spread of SARS-CoV-2.

Authors:  Juan Li; Shengjie Lai; George F Gao; Weifeng Shi
Journal:  Nature       Date:  2021-12-08       Impact factor: 49.962

3.  Determinants of SARS-CoV-2 transmission to guide vaccination strategy in an urban area.

Authors:  Sarah C Brüningk; Juliane Klatt; Madlen Stange; Alfredo Mari; Myrta Brunner; Tim-Christoph Roloff; Helena M B Seth-Smith; Michael Schweitzer; Karoline Leuzinger; Kirstine K Søgaard; Diana Albertos Torres; Alexander Gensch; Ann-Kathrin Schlotterbeck; Christian H Nickel; Nicole Ritz; Ulrich Heininger; Julia Bielicki; Katharina Rentsch; Simon Fuchs; Roland Bingisser; Martin Siegemund; Hans Pargger; Diana Ciardo; Olivier Dubuis; Andreas Buser; Sarah Tschudin-Sutter; Manuel Battegay; Rita Schneider-Sliwa; Karsten M Borgwardt; Hans H Hirsch; Adrian Egli
Journal:  Virus Evol       Date:  2022-03-17

4.  Predicting the effect of confinement on the COVID-19 spread using machine learning enriched with satellite air pollution observations.

Authors:  Xiaofan Xing; Yuankang Xiong; Ruipu Yang; Rong Wang; Weibing Wang; Haidong Kan; Tun Lu; Dongsheng Li; Junji Cao; Josep Peñuelas; Philippe Ciais; Nico Bauer; Olivier Boucher; Yves Balkanski; Didier Hauglustaine; Guy Brasseur; Lidia Morawska; Ivan A Janssens; Xiangrong Wang; Jordi Sardans; Yijing Wang; Yifei Deng; Lin Wang; Jianmin Chen; Xu Tang; Renhe Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-17       Impact factor: 11.205

5.  Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.

Authors:  Nicola F Müller; Cassia Wagner; Chris D Frazar; Pavitra Roychoudhury; Jover Lee; Louise H Moncla; Benjamin Pelle; Matthew Richardson; Erica Ryke; Hong Xie; Lasata Shrestha; Amin Addetia; Victoria M Rachleff; Nicole A P Lieberman; Meei-Li Huang; Romesh Gautom; Geoff Melly; Brian Hiatt; Philip Dykema; Amanda Adler; Elisabeth Brandstetter; Peter D Han; Kairsten Fay; Misja Ilcisin; Kirsten Lacombe; Thomas R Sibley; Melissa Truong; Caitlin R Wolf; Michael Boeckh; Janet A Englund; Michael Famulare; Barry R Lutz; Mark J Rieder; Matthew Thompson; Jeffrey S Duchin; Lea M Starita; Helen Y Chu; Jay Shendure; Keith R Jerome; Scott Lindquist; Alexander L Greninger; Deborah A Nickerson; Trevor Bedford
Journal:  Sci Transl Med       Date:  2021-05-03       Impact factor: 17.956

6.  Molecular evidence of SARS-CoV-2 in New York before the first pandemic wave.

Authors:  Matthew M Hernandez; Ana S Gonzalez-Reiche; Hala Alshammary; Shelcie Fabre; Zenab Khan; Adriana van De Guchte; Ajay Obla; Ethan Ellis; Mitchell J Sullivan; Jessica Tan; Bremy Alburquerque; Juan Soto; Ching-Yi Wang; Shwetha Hara Sridhar; Ying-Chih Wang; Melissa Smith; Robert Sebra; Alberto E Paniz-Mondolfi; Melissa R Gitman; Michael D Nowak; Carlos Cordon-Cardo; Marta Luksza; Florian Krammer; Harm van Bakel; Viviana Simon; Emilia Mia Sordillo
Journal:  Nat Commun       Date:  2021-06-08       Impact factor: 14.919

Review 7.  SARS-CoV-2 variants, spike mutations and immune escape.

Authors:  William T Harvey; Alessandro M Carabelli; Ben Jackson; Ravindra K Gupta; Emma C Thomson; Ewan M Harrison; Catherine Ludden; Richard Reeve; Andrew Rambaut; Sharon J Peacock; David L Robertson
Journal:  Nat Rev Microbiol       Date:  2021-06-01       Impact factor: 78.297

8.  Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador.

Authors:  Bernardo Gutierrez; Sully Márquez; Belén Prado-Vivar; Mónica Becerra-Wong; Juan José Guadalupe; Darlan Da Silva Candido; Juan Carlos Fernandez-Cadena; Gabriel Morey-Leon; Rubén Armas-Gonzalez; Derly Madeleiny Andrade-Molina; Alfredo Bruno; Domenica De Mora; Maritza Olmedo; Denisse Portugal; Manuel Gonzalez; Alberto Orlando; Jan Felix Drexler; Andres Moreira-Soto; Anna-Lena Sander; Sebastian Brünink; Arne Kühne; Leandro Patiño; Andrés Carrazco-Montalvo; Orson Mestanza; Jeannete Zurita; Gabriela Sevillano; Louis Du Plessis; John T McCrone; Josefina Coloma; Gabriel Trueba; Verónica Barragán; Patricio Rojas-Silva; Michelle Grunauer; Moritz U G Kraemer; Nuno R Faria; Marina Escalera-Zamudio; Oliver G Pybus; Paúl Cárdenas
Journal:  Virus Evol       Date:  2021-06-04

Review 9.  The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review.

Authors:  George M Nduva; Jamirah Nazziwa; Amin S Hassan; Eduard J Sanders; Joakim Esbjörnsson
Journal:  Viruses       Date:  2021-06-19       Impact factor: 5.048

10.  2020 SARS-CoV-2 diversification in the United States: Establishing a pre-vaccination baseline.

Authors:  Adam A Capoferri; Wei Shao; Jon Spindler; John M Coffin; Jason W Rausch; Mary F Kearney
Journal:  medRxiv       Date:  2021-06-04
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