Literature DB >> 32910837

Double Histidine Based EPR Measurements at Physiological Temperatures Permit Site-Specific Elucidation of Hidden Dynamics in Enzymes.

Kevin Singewald1, Xiaowei Bogetti1, Kaustubh Sinha2, Gordon S Rule2, Sunil Saxena1.   

Abstract

Protein dynamics is at the heart of all cellular processes. Here, we utilize the dHis-CuII NTA label to obtain site-specific information on dynamics for both an α-helix and β-sheet site of GB1, the immunoglobulin binding domain of protein G. Spectral features found in our CW-EPR measurements were consistent with the overall rigid nature of GB1 and with predictions from molecular dynamics simulations. Using this information, we show the potential of this approach to elucidate the role of dynamics in substrate binding of a functionally necessary α-helix in human glutathione transferase A1-1 (hGSTA1-1). We observe two dynamical modes for the helix. The addition of the inhibitor GS-Met and GS-Hex resulted in hGSTA1-1 to favor the more rigid active state conformation, while the faster mode potentially aids the search for substrates. Together the results illustrate the remarkable potential of the dHis-based labelling approach to measure site-specific dynamics using room temperature lineshape analysis.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  EPR spectroscopy; continuous wave; copper; protein dynamics; spin labelling

Year:  2020        PMID: 32910837     DOI: 10.1002/anie.202009982

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  6 in total

1.  Copper Based Site-directed Spin Labeling of Proteins for Use in Pulsed and Continuous Wave EPR Spectroscopy.

Authors:  Kevin Singewald; James A Wilkinson; And Sunil Saxena
Journal:  Bio Protoc       Date:  2021-12-20

2.  PELDOR Measurements on Nitroxide-Labeled Oligonucleotides.

Authors:  Tobias Hett; Olav Schiemann
Journal:  Methods Mol Biol       Date:  2022

3.  Beyond structure: Deciphering site-specific dynamics in proteins from double histidine-based EPR measurements.

Authors:  Kevin Singewald; James A Wilkinson; Zikri Hasanbasri; Sunil Saxena
Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

4.  Cleavage-Resistant Protein Labeling With Hydrophilic Trityl Enables Distance Measurements In-Cell.

Authors:  Zikri Hasanbasri; Kevin Singewald; Teresa D Gluth; Benoit Driesschaert; Sunil Saxena
Journal:  J Phys Chem B       Date:  2021-05-13       Impact factor: 3.466

5.  HDX-guided EPR spectroscopy to interrogate membrane protein dynamics.

Authors:  Benjamin J Lane; Bolin Wang; Yue Ma; Antonio N Calabrese; Hassane El Mkami; Christos Pliotas
Journal:  STAR Protoc       Date:  2022-07-18

6.  A Comparison of Cysteine-Conjugated Nitroxide Spin Labels for Pulse Dipolar EPR Spectroscopy.

Authors:  Katrin Ackermann; Alexandra Chapman; Bela E Bode
Journal:  Molecules       Date:  2021-12-13       Impact factor: 4.411

  6 in total

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