Literature DB >> 32909104

Caterpillars on three and four leaves are sufficient to reconstruct binary normal networks.

Simone Linz1, Charles Semple2.   

Abstract

While every rooted binary phylogenetic tree is determined by its set of displayed rooted triples, such a result does not hold for an arbitrary rooted binary phylogenetic network. In particular, there exist two non-isomorphic rooted binary temporal normal networks that display the same set of rooted triples. Moreover, without any structural constraint on the rooted phylogenetic networks under consideration, similarly negative results have also been established for binets and trinets which are rooted subnetworks on two and three leaves, respectively. Hence, in general, piecing together a rooted phylogenetic network from such a set of small building blocks appears insurmountable. In contrast to these results, in this paper, we show that a rooted binary normal network is determined by its sets of displayed caterpillars (particular type of subtrees) on three and four leaves. The proof is constructive and realises a polynomial-time algorithm that takes the sets of caterpillars on three and four leaves displayed by a rooted binary normal network and, up to isomorphism, reconstructs this network.

Keywords:  Normal networks; Quads; Rooted triples

Mesh:

Year:  2020        PMID: 32909104     DOI: 10.1007/s00285-020-01533-7

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  1 in total

1.  Merging Arcs to Produce Acyclic Phylogenetic Networks and Normal Networks.

Authors:  Stephen J Willson
Journal:  Bull Math Biol       Date:  2022-01-04       Impact factor: 1.758

  1 in total

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