Literature DB >> 32908256

Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource.

Stephanie Portelli1,2, Moshe Olshansky1,2, Carlos H M Rodrigues1,2, Elston N D'Souza1,2, Yoochan Myung1,2, Michael Silk1,2, Azadeh Alavi1,2, Douglas E V Pires1,2,3, David B Ascher4,5,6.   

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Year:  2020        PMID： 32908256     DOI： 10.1038/s41588-020-0693-3

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  19 in total

1.  Bioinformatics for the Origin and Evolution of Viruses.

Authors:  Jiajia Chen; Yuxin Zhang; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

2.  SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions.

Authors:  Mariona Torrens-Fontanals; Alejandro Peralta-García; Carmine Talarico; Ramon Guixà-González; Toni Giorgino; Jana Selent
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 19.160

3.  ThermoMutDB: a thermodynamic database for missense mutations.

Authors:  Joicymara S Xavier; Thanh-Binh Nguyen; Malancha Karmarkar; Stephanie Portelli; Pâmela M Rezende; João P L Velloso; David B Ascher; Douglas E V Pires
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 4.  Characterization of SARS-CoV-2 different variants and related morbidity and mortality: a systematic review.

Authors:  SeyedAhmad SeyedAlinaghi; Pegah Mirzapour; Omid Dadras; Zahra Pashaei; Amirali Karimi; Mehrzad MohsseniPour; Mahdi Soleymanzadeh; Alireza Barzegary; Amir Masoud Afsahi; Farzin Vahedi; Ahmadreza Shamsabadi; Farzane Behnezhad; Solmaz Saeidi; Esmaeil Mehraeen
Journal:  Eur J Med Res       Date:  2021-06-08       Impact factor: 2.175

Review 5.  Biochemical features and mutations of key proteins in SARS-CoV-2 and their impacts on RNA therapeutics.

Authors:  Li Zeng; Dongying Li; Weida Tong; Tieliu Shi; Baitang Ning
Journal:  Biochem Pharmacol       Date:  2021-01-19       Impact factor: 5.858

6.  DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations.

Authors:  Carlos H M Rodrigues; Douglas E V Pires; David B Ascher
Journal:  Protein Sci       Date:  2020-09-11       Impact factor: 6.725

Review 7.  The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.

Authors:  Vaishali P Waman; Neeladri Sen; Mihaly Varadi; Antoine Daina; Shoshana J Wodak; Vincent Zoete; Sameer Velankar; Christine Orengo
Journal:  Brief Bioinform       Date:  2021-03-22       Impact factor: 11.622

8.  Prediction of rifampicin resistance beyond the RRDR using structure-based machine learning approaches.

Authors:  Stephanie Portelli; Yoochan Myung; Nicholas Furnham; Sundeep Chaitanya Vedithi; Douglas E V Pires; David B Ascher
Journal:  Sci Rep       Date:  2020-10-22       Impact factor: 4.379

9.  Structure-Function Analyses of New SARS-CoV-2 Variants B.1.1.7, B.1.351 and B.1.1.28.1: Clinical, Diagnostic, Therapeutic and Public Health Implications.

Authors:  Jasdeep Singh; Jasmine Samal; Vipul Kumar; Jyoti Sharma; Usha Agrawal; Nasreen Z Ehtesham; Durai Sundar; Syed Asad Rahman; Subhash Hira; Seyed E Hasnain
Journal:  Viruses       Date:  2021-03-09       Impact factor: 5.048

10.  Distinguishing between PTEN clinical phenotypes through mutation analysis.

Authors:  Stephanie Portelli; Lucy Barr; Alex G C de Sá; Douglas E V Pires; David B Ascher
Journal:  Comput Struct Biotechnol J       Date:  2021-05-21       Impact factor: 7.271
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