Literature DB >> 32896097

Ocular genetics in the genomics age.

Michael A Walter1, Tayebeh Rezaie2, Robert B Hufnagel3, Gavin Arno4,5.   

Abstract

Current genetic screening methods for inherited eye diseases are concentrated on the coding exons of known disease genes (gene panels, clinical exome). These tests have a variable and often limited diagnostic rate depending on the clinical presentation, size of the gene panel and our understanding of the inheritance of the disorder (with examples described in this issue). There are numerous possible explanations for the missing heritability of these cases including undetected variants within the relevant gene (intronic, up/down-stream and structural variants), variants harbored in genes outside the targeted panel, intergenic variants, variants undetectable by the applied technology, complex/non-Mendelian inheritance, and nongenetic phenocopies. In this article we further explore and review methods to investigate these sources of missing heritability.
© 2020 Wiley Periodicals LLC.

Entities:  

Keywords:  enhancer; regulatory; variant

Mesh:

Year:  2020        PMID: 32896097      PMCID: PMC8170588          DOI: 10.1002/ajmg.c.31844

Source DB:  PubMed          Journal:  Am J Med Genet C Semin Med Genet        ISSN: 1552-4868            Impact factor:   3.359


  81 in total

1.  PITs and FOXes in ocular genetics: the Cogan lecture.

Authors:  Michael A Walter
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-04       Impact factor: 4.799

2.  Complement factor H polymorphism in age-related macular degeneration.

Authors:  Robert J Klein; Caroline Zeiss; Emily Y Chew; Jen-Yue Tsai; Richard S Sackler; Chad Haynes; Alice K Henning; John Paul SanGiovanni; Shrikant M Mane; Susan T Mayne; Michael B Bracken; Frederick L Ferris; Jurg Ott; Colin Barnstable; Josephine Hoh
Journal:  Science       Date:  2005-03-10       Impact factor: 47.728

Review 3.  Aniridia and Axenfeld-Rieger Syndrome: Clinical presentations, molecular genetics and current/emerging therapies.

Authors:  Paul W Chrystal; Michael A Walter
Journal:  Exp Eye Res       Date:  2019-09-24       Impact factor: 3.467

4.  Mutation of the Stargardt disease gene (ABCR) in age-related macular degeneration.

Authors:  R Allikmets; N F Shroyer; N Singh; J M Seddon; R A Lewis; P S Bernstein; A Peiffer; N A Zabriskie; Y Li; A Hutchinson; M Dean; J R Lupski; M Leppert
Journal:  Science       Date:  1997-09-19       Impact factor: 47.728

5.  Systematic Computational Identification of Variants That Activate Exonic and Intronic Cryptic Splice Sites.

Authors:  Melissa Lee; Patrick Roos; Neeraj Sharma; Melis Atalar; Taylor A Evans; Matthew J Pellicore; Emily Davis; Anh-Thu N Lam; Susan E Stanley; Sara E Khalil; George M Solomon; Doug Walker; Karen S Raraigh; Briana Vecchio-Pagan; Mary Armanios; Garry R Cutting
Journal:  Am J Hum Genet       Date:  2017-05-04       Impact factor: 11.025

6.  High levels of chromosome instability in polyploids of Saccharomyces cerevisiae.

Authors:  V W Mayer; A Aguilera
Journal:  Mutat Res       Date:  1990-08       Impact factor: 2.433

7.  Analysis of the ABCA4 genomic locus in Stargardt disease.

Authors:  Jana Zernant; Yajing Angela Xie; Carmen Ayuso; Rosa Riveiro-Alvarez; Miguel-Angel Lopez-Martinez; Francesca Simonelli; Francesco Testa; Michael B Gorin; Samuel P Strom; Mette Bertelsen; Thomas Rosenberg; Philip M Boone; Bo Yuan; Radha Ayyagari; Peter L Nagy; Stephen H Tsang; Peter Gouras; Frederick T Collison; James R Lupski; Gerald A Fishman; Rando Allikmets
Journal:  Hum Mol Genet       Date:  2014-07-31       Impact factor: 6.150

8.  COL4A1 mutation in Axenfeld-Rieger anomaly with leukoencephalopathy and stroke.

Authors:  Igor Sibon; Isabelle Coupry; Patrice Menegon; Jean-Pierre Bouchet; Philippe Gorry; Ingrid Burgelin; Patrick Calvas; Isabelle Orignac; Vincent Dousset; Didier Lacombe; Jean-Marc Orgogozo; Benoît Arveiler; Cyril Goizet
Journal:  Ann Neurol       Date:  2007-08       Impact factor: 10.422

Review 9.  The Role of De Novo Noncoding Regulatory Mutations in Neurodevelopmental Disorders.

Authors:  Tychele N Turner; Evan E Eichler
Journal:  Trends Neurosci       Date:  2018-12-15       Impact factor: 13.837

10.  RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Authors:  Hui Y Xiong; Babak Alipanahi; Leo J Lee; Hannes Bretschneider; Daniele Merico; Ryan K C Yuen; Yimin Hua; Serge Gueroussov; Hamed S Najafabadi; Timothy R Hughes; Quaid Morris; Yoseph Barash; Adrian R Krainer; Nebojsa Jojic; Stephen W Scherer; Benjamin J Blencowe; Brendan J Frey
Journal:  Science       Date:  2014-12-18       Impact factor: 47.728

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  1 in total

1.  Introduction to the special issue on Ophthalmic Genetics: Vision in 2020.

Authors:  Robert B Hufnagel; Michael A Walter; Gavin Arno
Journal:  Am J Med Genet C Semin Med Genet       Date:  2020-08-31       Impact factor: 3.359

  1 in total

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