Literature DB >> 32884150

Releasing uncurated datasets is essential for reproducible phylogenomics.

Eric D Salomaki1, Laura Eme2, Matthew W Brown3,4, Martin Kolisko5,6.   

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Year:  2020        PMID： 32884150     DOI： 10.1038/s41559-020-01296-w

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN： 2397-334X            Impact factor:   19.100


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  10 in total

1.  Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts.

Authors:  Fabien Burki; Jan Pawlowski
Journal:  Mol Biol Evol       Date:  2006-07-07       Impact factor: 16.240

2.  Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes.

Authors:  Gordon Lax; Yana Eglit; Laura Eme; Erin M Bertrand; Andrew J Roger; Alastair G B Simpson
Journal:  Nature       Date:  2018-11-14       Impact factor: 49.962

3.  Phylogenetic analyses of transcriptome data resolve familial assignments for genera of the red-algal Acrochaetiales-Palmariales Complex (Nemaliophycidae).

Authors:  Gary W Saunders; Chris Jackson; Eric D Salomaki
Journal:  Mol Phylogenet Evol       Date:  2017-11-11       Impact factor: 4.286

4.  The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba.

Authors:  Eric Bapteste; Henner Brinkmann; Jennifer A Lee; Dorothy V Moore; Christoph W Sensen; Paul Gordon; Laure Duruflé; Terry Gaasterland; Philippe Lopez; Miklós Müller; Hervé Philippe
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

5.  Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis.

Authors:  Johana Rotterová; Eric Salomaki; Tomáš Pánek; William Bourland; David Žihala; Petr Táborský; Virginia P Edgcomb; Roxanne A Beinart; Martin Kolísko; Ivan Čepička
Journal:  Curr Biol       Date:  2020-04-23       Impact factor: 10.834

6.  Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group.

Authors:  Matthew W Brown; Aaron A Heiss; Ryoma Kamikawa; Yuji Inagaki; Akinori Yabuki; Alexander K Tice; Takashi Shiratori; Ken-Ichiro Ishida; Tetsuo Hashimoto; Alastair G B Simpson; Andrew J Roger
Journal:  Genome Biol Evol       Date:  2018-02-01       Impact factor: 3.416

7.  Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes.

Authors:  Michelle M Leger; Martin Kolisko; Ryoma Kamikawa; Courtney W Stairs; Keitaro Kume; Ivan Čepička; Jeffrey D Silberman; Jan O Andersson; Feifei Xu; Akinori Yabuki; Laura Eme; Qianqian Zhang; Kiyotaka Takishita; Yuji Inagaki; Alastair G B Simpson; Tetsuo Hashimoto; Andrew J Roger
Journal:  Nat Ecol Evol       Date:  2017-04-01       Impact factor: 15.460

8.  Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics.

Authors:  Karen Siu-Ting; María Torres-Sánchez; Diego San Mauro; David Wilcockson; Mark Wilkinson; Davide Pisani; Mary J O'Connell; Christopher J Creevey
Journal:  Mol Biol Evol       Date:  2019-06-01       Impact factor: 16.240

9.  Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains.

Authors:  Guifré Torruella; Romain Derelle; Jordi Paps; B Franz Lang; Andrew J Roger; Kamran Shalchian-Tabrizi; Iñaki Ruiz-Trillo
Journal:  Mol Biol Evol       Date:  2011-07-18       Impact factor: 16.240

10.  New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life.

Authors:  Jürgen F H Strassert; Mahwash Jamy; Alexander P Mylnikov; Denis V Tikhonenkov; Fabien Burki
Journal:  Mol Biol Evol       Date:  2019-04-01       Impact factor: 16.240
  10 in total
  2 in total

1.  An investigation of irreproducibility in maximum likelihood phylogenetic inference.

Authors:  Xing-Xing Shen; Yuanning Li; Chris Todd Hittinger; Xue-Xin Chen; Antonis Rokas
Journal:  Nat Commun       Date:  2020-11-30       Impact factor: 14.919

2.  Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans.

Authors:  Eric D Salomaki; Kristina X Terpis; Sonja Rueckert; Michael Kotyk; Zuzana Kotyková Varadínová; Ivan Čepička; Christopher E Lane; Martin Kolisko
Journal:  BMC Biol       Date:  2021-04-16       Impact factor: 7.431
  2 in total

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