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Literature DB >> 32878948

Targeted Metagenomics Offers Insights into Potential Tick-Borne Pathogens.

Abstract

Tick-borne disease pathogen identification remains a diagnostic challenge due to the multiple tests necessary for diagnosis. Targeted metagenomic sequencing is an evolving method to detect multiple different pathogens with a single test. In this issue of the Journal of Clinical Microbiology, L. Kingry, S. Sheldon, S. Oatman, B. Pritt, et al. (J Clin Microbiol 58:e00147-20, 2020, https://doi.org/10.1128/JCM.00147-20) explore 16S rRNA gene-targeted metagenomics to identify bacterial pathogens in 881 of more than 13,000 specimens submitted for tick-borne pathogen testing, giving new insights into suspected tick-borne pathogens.

Mesh：

Substances：
RNA, Ribosomal, 16S

Year: 2020 PMID： 32878948 PMCID： PMC7587107 DOI： 10.1128/JCM.01893-20

Source DB: PubMed Journal: J Clin Microbiol ISSN： 0095-1137 Impact factor: 5.948

15 in total

Review 1. Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities.

Authors: Hikaru Suenaga
Journal: Environ Microbiol Date: 2011-03-01 Impact factor: 5.491

2. Surveillance for and Discovery of Borrelia Species in US Patients Suspected of Tickborne Illness.

Authors: Luke C Kingry; Melissa Anacker; Bobbi Pritt; Jenna Bjork; Laurel Respicio-Kingry; Gongping Liu; Sarah Sheldon; David Boxrud; Anna Strain; Stephanie Oatman; Jon Berry; Lynne Sloan; Paul Mead; David Neitzel; Kiersten J Kugeler; Jeannine M Petersen
Journal: Clin Infect Dis Date: 2018-06-01 Impact factor: 9.079

3. Diagnosis and Management of Tickborne Rickettsial Diseases: Rocky Mountain Spotted Fever and Other Spotted Fever Group Rickettsioses, Ehrlichioses, and Anaplasmosis - United States.

Authors: Holly M Biggs; Casey Barton Behravesh; Kristy K Bradley; F Scott Dahlgren; Naomi A Drexler; J Stephen Dumler; Scott M Folk; Cecilia Y Kato; R Ryan Lash; Michael L Levin; Robert F Massung; Robert B Nadelman; William L Nicholson; Christopher D Paddock; Bobbi S Pritt; Marc S Traeger
Journal: MMWR Recomm Rep Date: 2016-05-13

4. Diagnosis of Periprosthetic Joint Infection: The Potential of Next-Generation Sequencing.

Authors: Majd Tarabichi; Noam Shohat; Karan Goswami; Abtin Alvand; Randi Silibovsky; Katherine Belden; Javad Parvizi
Journal: J Bone Joint Surg Am Date: 2018-01-17 Impact factor: 5.284

5. Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis.

Authors: Nobuo Watanabe; Kirill Kryukov; So Nakagawa; Junko S Takeuchi; Meiko Takeshita; Yukiko Kirimura; Satomi Mitsuhashi; Toru Ishihara; Hiromichi Aoki; Sadaki Inokuchi; Tadashi Imanishi; Shigeaki Inoue
Journal: PLoS One Date: 2018-08-15 Impact factor: 3.240

6. Extensive Diversity of RNA Viruses in Australian Ticks.

Authors: Erin Harvey; Karrie Rose; John-Sebastian Eden; Nathan Lo; Thilanka Abeyasuriya; Mang Shi; Stephen L Doggett; Edward C Holmes
Journal: J Virol Date: 2019-01-17 Impact factor: 5.103

7. Metagenomic profiling of ticks: Identification of novel rickettsial genomes and detection of tick-borne canine parvovirus.

Authors: Anuradha Ravi; Suheir Ereqat; Amer Al-Jawabreh; Ziad Abdeen; Omar Abu Shamma; Holly Hall; Mark J Pallen; Abedelmajeed Nasereddin
Journal: PLoS Negl Trop Dis Date: 2019-01-14

8. Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples.

Authors: Prakhar Vijayvargiya; Patricio R Jeraldo; Matthew J Thoendel; Kerryl E Greenwood-Quaintance; Zerelda Esquer Garrigos; M Rizwan Sohail; Nicholas Chia; Bobbi S Pritt; Robin Patel
Journal: PLoS One Date: 2019-10-02 Impact factor: 3.240

9. Common contaminants in next-generation sequencing that hinder discovery of low-abundance microbes.

Authors: Martin Laurence; Christos Hatzis; Douglas E Brash
Journal: PLoS One Date: 2014-05-16 Impact factor: 3.240

10. Vital Signs: Trends in Reported Vectorborne Disease Cases - United States and Territories, 2004-2016.

Authors: Ronald Rosenberg; Nicole P Lindsey; Marc Fischer; Christopher J Gregory; Alison F Hinckley; Paul S Mead; Gabriela Paz-Bailey; Stephen H Waterman; Naomi A Drexler; Gilbert J Kersh; Holley Hooks; Susanna K Partridge; Susanna N Visser; Charles B Beard; Lyle R Petersen
Journal: MMWR Morb Mortal Wkly Rep Date: 2018-05-04 Impact factor: 17.586

2 in total

1. Genomic evolution and adaptation of arthropod-associated Rickettsia.

Authors: Khalid El Karkouri; Eric Ghigo; Didier Raoult; Pierre-Edouard Fournier
Journal: Sci Rep Date: 2022-03-09 Impact factor: 4.379

2. Bacteria related to tick-borne pathogen assemblages in Ornithodoros cf. hasei (Acari: Argasidae) and blood of the wild mammal hosts in the Orinoquia region, Colombia.

Authors: Juan D Carvajal-Agudelo; Héctor E Ramírez-Chaves; Paula A Ossa-López; Fredy A Rivera-Páez
Journal: Exp Appl Acarol Date: 2022-07-13 Impact factor: 2.380

2 in total