Literature DB >> 32872128

Bioinformatics Methods in Medical Genetics and Genomics.

Yuriy L Orlov1,2,3, Ancha V Baranova4,5, Tatiana V Tatarinova6,7.   

Abstract

Medical genomics relies on next-gen sequencing methods to decipher underlying molecular mechanisms of gene expression. This special issue collects materials originally presented at the "Centenary of Human Population Genetics" Conference-2019, in Moscow. Here we present some recent developments in computational methods tested on actual medical genetics problems dissected through genomics, transcriptomics and proteomics data analysis, gene networks, protein-protein interactions and biomedical literature mining. We have selected materials based on systems biology approaches, database mining. These methods and algorithms were discussed at the Digital Medical Forum-2019, organized by I.M. Sechenov First Moscow State Medical University presenting bioinformatics approaches for the drug targets discovery in cancer, its computational support, and digitalization of medical research, as well as at "Systems Biology and Bioinformatics"-2019 (SBB-2019) Young Scientists School in Novosibirsk, Russia. Selected recent advancements discussed at these events in the medical genomics and genetics areas are based on novel bioinformatics tools.

Entities:  

Keywords:  bioinformatics; gene expression; genomics; human population genetics; medical genetics

Mesh:

Year:  2020        PMID: 32872128      PMCID: PMC7504073          DOI: 10.3390/ijms21176224

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  22 in total

1.  Computational models in genetics at BGRS\SB-2016: introductory note.

Authors:  Yuriy L Orlov; Ancha V Baranova; Arcady L Markel
Journal:  BMC Genet       Date:  2016-12-22       Impact factor: 2.797

2.  Bioinformatics research at BGRS-2018.

Authors:  Tatiana V Tatarinova; Ming Chen; Yuriy L Orlov
Journal:  BMC Bioinformatics       Date:  2019-02-05       Impact factor: 3.169

3.  Y-chromosome and Surname Analyses for Reconstructing Past Population Structures: The Sardinian Population as a Test Case.

Authors:  Viola Grugni; Alessandro Raveane; Giulia Colombo; Carmen Nici; Francesca Crobu; Linda Ongaro; Vincenza Battaglia; Daria Sanna; Nadia Al-Zahery; Ornella Fiorani; Antonella Lisa; Luca Ferretti; Alessandro Achilli; Anna Olivieri; Paolo Francalacci; Alberto Piazza; Antonio Torroni; Ornella Semino
Journal:  Int J Mol Sci       Date:  2019-11-16       Impact factor: 5.923

4.  The mTOR Signaling Pathway Activity and Vitamin D Availability Control the Expression of Most Autism Predisposition Genes.

Authors:  Ekaterina A Trifonova; Alexandra I Klimenko; Zakhar S Mustafin; Sergey A Lashin; Alex V Kochetov
Journal:  Int J Mol Sci       Date:  2019-12-15       Impact factor: 5.923

5.  A Post-Processing Algorithm for miRNA Microarray Data.

Authors:  Stepan Nersisyan; Maxim Shkurnikov; Andrey Poloznikov; Andrey Turchinovich; Barbara Burwinkel; Nikita Anisimov; Alexander Tonevitsky
Journal:  Int J Mol Sci       Date:  2020-02-12       Impact factor: 5.923

6.  Elucidating Binding Sites and Affinities of ERα Agonists and Antagonists to Human Alpha-Fetoprotein by In Silico Modeling and Point Mutagenesis.

Authors:  Nurbubu T Moldogazieva; Daria S Ostroverkhova; Nikolai N Kuzmich; Vladimir V Kadochnikov; Alexander A Terentiev; Yuri B Porozov
Journal:  Int J Mol Sci       Date:  2020-01-30       Impact factor: 5.923

7.  Disparity between Inter-Patient Molecular Heterogeneity and Repertoires of Target Drugs Used for Different Types of Cancer in Clinical Oncology.

Authors:  Marianna A Zolotovskaia; Maxim I Sorokin; Ivan V Petrov; Elena V Poddubskaya; Alexey A Moiseev; Marina I Sekacheva; Nicolas M Borisov; Victor S Tkachev; Andrew V Garazha; Andrey D Kaprin; Peter V Shegay; Alf Giese; Ella Kim; Sergey A Roumiantsev; Anton A Buzdin
Journal:  Int J Mol Sci       Date:  2020-02-26       Impact factor: 5.923

8.  A Computational Approach for the Prediction of Treatment History and the Effectiveness or Failure of Antiretroviral Therapy.

Authors:  Olga Tarasova; Nadezhda Biziukova; Dmitry Kireev; Alexey Lagunin; Sergey Ivanov; Dmitry Filimonov; Vladimir Poroikov
Journal:  Int J Mol Sci       Date:  2020-01-23       Impact factor: 5.923

9.  Prediction of Protein-Ligand Interaction Based on the Positional Similarity Scores Derived from Amino Acid Sequences.

Authors:  Dmitry Karasev; Boris Sobolev; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov
Journal:  Int J Mol Sci       Date:  2019-12-18       Impact factor: 5.923

10.  Epidemiology of Hereditary Diseases in the Karachay-Cherkess Republic.

Authors:  Rena A Zinchenko; Amin Kh Makaov; Andrey V Marakhonov; Varvara A Galkina; Vitaly V Kadyshev; Galina I El'chinova; Elena L Dadali; Lyudmila K Mikhailova; Nika V Petrova; Nina E Petrina; Tatyana A Vasilyeva; Polina Gundorova; Alexander V Polyakov; Oksana Y Alexandrova; Sergey I Kutsev; Eugeny K Ginter
Journal:  Int J Mol Sci       Date:  2020-01-03       Impact factor: 5.923

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  2 in total

1.  Bioinformatics Applications to Reveal Molecular Mechanisms of Gene Expression Regulation in Model Organisms.

Authors:  Yuriy L Orlov; Tatiana V Tatarinova; Anastasia A Anashkina
Journal:  Int J Mol Sci       Date:  2021-11-05       Impact factor: 5.923

2.  Recent Trends in Cancer Genomics and Bioinformatics Tools Development.

Authors:  Anastasia A Anashkina; Elena Y Leberfarb; Yuriy L Orlov
Journal:  Int J Mol Sci       Date:  2021-11-10       Impact factor: 5.923

  2 in total

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