Literature DB >> 32869844

Potential for Standardization and Automation for Pathology and Endoscopy in Inflammatory Bowel Disease.

Sana Syed1, Ryan W Stidham2,3.   

Abstract

Automated image analysis methods have shown potential for replicating expert interpretation of histology and endoscopy images, which traditionally require highly specialized and experienced reviewers. Inflammatory bowel disease (IBD) diagnosis, severity assessment, and treatment decision-making require multimodal expert data interpretation and integration, which could be significantly aided by applications of machine learning analyses. This review introduces fundamental concepts of machine learning for imaging analysis and highlights research and development of automated histology and endoscopy interpretation in IBD. Proof-of-concept studies strongly suggest that histologic and endoscopic images can be interpreted with similar accuracy as knowledge experts. Encouraging results support the potential of automating existing disease activity scoring instruments with high reproducibility, speed, and accessibility, therefore improving the standardization of IBD assessment. Though challenges surrounding ground truth definitions, technical barriers, and the need for extensive multicenter evaluation must be resolved before clinical implementation, automated image analysis is likely to both improve access to standardized IBD assessment and advance the fundamental concepts of how disease is measured.
© 2020 Crohn’s & Colitis Foundation. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  automation; endoscopy; image analysis; inflammatory bowel disease; pathology

Mesh:

Year:  2020        PMID: 32869844      PMCID: PMC7749192          DOI: 10.1093/ibd/izaa211

Source DB:  PubMed          Journal:  Inflamm Bowel Dis        ISSN: 1078-0998            Impact factor:   7.290


  32 in total

1.  World Gastroenterology Organization Practice Guidelines for the diagnosis and management of IBD in 2010.

Authors:  Charles N Bernstein; Michael Fried; J H Krabshuis; Henry Cohen; R Eliakim; Suleiman Fedail; Richard Gearry; K L Goh; Saheed Hamid; Aamir Ghafor Khan; A W LeMair; Qin Ouyang; J F Rey; Ajit Sood; Flavio Steinwurz; Ole O Thomsen; Alan Thomson; Gillian Watermeyer
Journal:  Inflamm Bowel Dis       Date:  2010-01       Impact factor: 5.325

2.  Inflammatory bowel disease in children and adolescents: recommendations for diagnosis--the Porto criteria.

Authors: 
Journal:  J Pediatr Gastroenterol Nutr       Date:  2005-07       Impact factor: 2.839

3.  Structure-Preserving Color Normalization and Sparse Stain Separation for Histological Images.

Authors:  Abhishek Vahadane; Tingying Peng; Amit Sethi; Shadi Albarqouni; Lichao Wang; Maximilian Baust; Katja Steiger; Anna Melissa Schlitter; Irene Esposito; Nassir Navab
Journal:  IEEE Trans Med Imaging       Date:  2016-04-27       Impact factor: 10.048

4.  Early histological findings may predict the clinical phenotype in Crohn's colitis.

Authors:  Amir Klein; Yoav Mazor; Amir Karban; Ofer Ben-Itzhak; Yehuda Chowers; Edmond Sabo
Journal:  United European Gastroenterol J       Date:  2016-10-21       Impact factor: 4.623

5.  Deep learning algorithms for automated detection of Crohn's disease ulcers by video capsule endoscopy.

Authors:  Eyal Klang; Yiftach Barash; Reuma Yehuda Margalit; Shelly Soffer; Orit Shimon; Ahmad Albshesh; Shomron Ben-Horin; Marianne Michal Amitai; Rami Eliakim; Uri Kopylov
Journal:  Gastrointest Endosc       Date:  2019-11-16       Impact factor: 9.427

6.  Development and Validation of a Deep Neural Network for Accurate Evaluation of Endoscopic Images From Patients With Ulcerative Colitis.

Authors:  Kento Takenaka; Kazuo Ohtsuka; Toshimitsu Fujii; Mariko Negi; Kohei Suzuki; Hiromichi Shimizu; Shiori Oshima; Shintaro Akiyama; Maiko Motobayashi; Masakazu Nagahori; Eiko Saito; Katsuyoshi Matsuoka; Mamoru Watanabe
Journal:  Gastroenterology       Date:  2020-02-12       Impact factor: 22.682

7.  Host-microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal-luminal interface.

Authors:  Laura L Presley; Jingxiao Ye; Xiaoxiao Li; James Leblanc; Zhanpan Zhang; Paul M Ruegger; Jeff Allard; Dermot McGovern; Andrew Ippoliti; Bennett Roth; Xinping Cui; Daniel R Jeske; David Elashoff; Lee Goodglick; Jonathan Braun; James Borneman
Journal:  Inflamm Bowel Dis       Date:  2011-06-22       Impact factor: 5.325

8.  Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study.

Authors:  Subra Kugathasan; Lee A Denson; Thomas D Walters; Mi-Ok Kim; Urko M Marigorta; Melanie Schirmer; Kajari Mondal; Chunyan Liu; Anne Griffiths; Joshua D Noe; Wallace V Crandall; Scott Snapper; Shervin Rabizadeh; Joel R Rosh; Jason M Shapiro; Stephen Guthery; David R Mack; Richard Kellermayer; Michael D Kappelman; Steven Steiner; Dedrick E Moulton; David Keljo; Stanley Cohen; Maria Oliva-Hemker; Melvin B Heyman; Anthony R Otley; Susan S Baker; Jonathan S Evans; Barbara S Kirschner; Ashish S Patel; David Ziring; Bruce C Trapnell; Francisco A Sylvester; Michael C Stephens; Robert N Baldassano; James F Markowitz; Judy Cho; Ramnik J Xavier; Curtis Huttenhower; Bruce J Aronow; Greg Gibson; Jeffrey S Hyams; Marla C Dubinsky
Journal:  Lancet       Date:  2017-03-02       Impact factor: 79.321

9.  Exploring the clinical potential of an automatic colonic polyp detection method based on the creation of energy maps.

Authors:  Glòria Fernández-Esparrach; Jorge Bernal; Maria López-Cerón; Henry Córdova; Cristina Sánchez-Montes; Cristina Rodríguez de Miguel; Francisco Javier Sánchez
Journal:  Endoscopy       Date:  2016-06-10       Impact factor: 10.093

10.  A novel approach for quantitative assessment of mucosal damage in inflammatory bowel disease.

Authors:  Ismail I Matalka; Faruq A Al-Omari; Rola M Salama; Alia H Mohtaseb
Journal:  Diagn Pathol       Date:  2013-09-20       Impact factor: 2.644

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  4 in total

1.  Using Multi-Scale Convolutional Neural Network Based on Multi-Instance Learning to Predict the Efficacy of Neoadjuvant Chemoradiotherapy for Rectal Cancer.

Authors:  Dehai Zhang; Yongchun Duan; Jing Guo; Yaowei Wang; Yun Yang; Zhenhui Li; Kelong Wang; Lin Wu; Minghao Yu
Journal:  IEEE J Transl Eng Health Med       Date:  2022-03-03       Impact factor: 3.316

2.  Defining the Path Forward for Biomarkers to Address Unmet Needs in Inflammatory Bowel Diseases.

Authors:  Gerard Honig; Caren Heller; Andrés Hurtado-Lorenzo
Journal:  Inflamm Bowel Dis       Date:  2020-09-18       Impact factor: 5.325

Review 3.  Artificial intelligence applications in inflammatory bowel disease: Emerging technologies and future directions.

Authors:  John Gubatan; Steven Levitte; Akshar Patel; Tatiana Balabanis; Mike T Wei; Sidhartha R Sinha
Journal:  World J Gastroenterol       Date:  2021-05-07       Impact factor: 5.742

Review 4.  Molecular Imaging of Inflammatory Disease.

Authors:  Meredith A Jones; William M MacCuaig; Alex N Frickenstein; Seda Camalan; Metin N Gurcan; Jennifer Holter-Chakrabarty; Katherine T Morris; Molly W McNally; Kristina K Booth; Steven Carter; William E Grizzle; Lacey R McNally
Journal:  Biomedicines       Date:  2021-02-04
  4 in total

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