Literature DB >> 32863493

Structured Analysis of the High-dimensional FMR Model.

Mengque Liu1, Qingzhao Zhang2,3, Kuangnan Fang2, Shuangge Ma2,4.   

Abstract

The finite mixture of regression (FMR) model is a popular tool for accommodating data heterogeneity. In the analysis of FMR models with high-dimensional covariates, it is necessary to conduct regularized estimation and identify important covariates rather than noises. In the literature, there has been a lack of attention paid to the differences among important covariates, which can lead to the underlying structure of covariate effects. Specifically, important covariates can be classified into two types: those that behave the same in different subpopulations and those that behave differently. It is of interest to conduct structured analysis to identify such structures, which will enable researchers to better understand covariates and their associations with outcomes. Specifically, the FMR model with high-dimensional covariates is considered. A structured penalization approach is developed for regularized estimation, selection of important variables, and, equally importantly, identification of the underlying covariate effect structure. The proposed approach can be effectively realized, and its statistical properties are rigorously established. Simulation demonstrates its superiority over alternatives. In the analysis of cancer gene expression data, interesting models/structures missed by the existing analysis are identified.

Entities:  

Keywords:  Finite mixture of regression model; High-dimensional data; Structure of covariate effect

Year:  2019        PMID: 32863493      PMCID: PMC7451155          DOI: 10.1016/j.csda.2019.106883

Source DB:  PubMed          Journal:  Comput Stat Data Anal        ISSN: 0167-9473            Impact factor:   1.681


  7 in total

1.  Promoting structural effects of covariates in the cure rate model with penalization.

Authors:  Xinyan Fan; Mengque Liu; Kuangnan Fang; Yuan Huang; Shuangge Ma
Journal:  Stat Methods Med Res       Date:  2017-05-08       Impact factor: 3.021

2.  Analysis of cancer gene expression data with an assisted robust marker identification approach.

Authors:  Hao Chai; Xingjie Shi; Qingzhao Zhang; Qing Zhao; Yuan Huang; Shuangge Ma
Journal:  Genet Epidemiol       Date:  2017-09-14       Impact factor: 2.135

3.  Incorporating network structure in integrative analysis of cancer prognosis data.

Authors:  Jin Liu; Jian Huang; Shuangge Ma
Journal:  Genet Epidemiol       Date:  2012-11-17       Impact factor: 2.135

4.  Integrated analysis of multidimensional omics data on cutaneous melanoma prognosis.

Authors:  Yu Jiang; Xingjie Shi; Qing Zhao; Michael Krauthammer; Bonnie E Gould Rothberg; Shuangge Ma
Journal:  Genomics       Date:  2016-04-30       Impact factor: 5.736

5.  Regularization in finite mixture of regression models with diverging number of parameters.

Authors:  Abbas Khalili; Shili Lin
Journal:  Biometrics       Date:  2013-04-04       Impact factor: 2.571

6.  Promoting Similarity of Sparsity Structures in Integrative Analysis with Penalization.

Authors:  Yuan Huang; Qingzhao Zhang; Sanguo Zhang; Jian Huang; Shuangge Ma
Journal:  J Am Stat Assoc       Date:  2017-05-03       Impact factor: 5.033

7.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962

  7 in total
  1 in total

1.  Histopathological imaging-based cancer heterogeneity analysis via penalized fusion with model averaging.

Authors:  Baihua He; Tingyan Zhong; Jian Huang; Yanyan Liu; Qingzhao Zhang; Shuangge Ma
Journal:  Biometrics       Date:  2020-08-29       Impact factor: 1.701

  1 in total

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