Literature DB >> 32853968

Natural product discovery through microbial genome mining.

Emma Kenshole1, Marion Herisse1, Michael Michael1, Sacha J Pidot2.   

Abstract

The advent of the genomic era has opened up enormous possibilities for the discovery of new natural products. Also known as specialized metabolites, these compounds produced by bacteria, fungi, and plants have long been sought for their bioactive properties. Innovations in both DNA sequencing technologies and bioinformatics now allow the wealth of sequence data to be mined at both the genome and metagenome levels for new specialized metabolites. However, a key problem that remains is rapidly and efficiently linking these identified genes to their corresponding compounds. Within this review, we provide specific examples of studies that have used the power of genomic or metagenomic data to overcome these problems and identify new small molecules and their biosynthetic pathways.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Genome mining; Genomics; Metagenomics; Specialized metabolite

Year:  2020        PMID: 32853968     DOI: 10.1016/j.cbpa.2020.07.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  12 in total

1.  Genomic diversity and biosynthetic capabilities of sponge-associated chlamydiae.

Authors:  Jennah E Dharamshi; Natalia Gaarslev; Karin Steffen; Tom Martin; Detmer Sipkema; Thijs J G Ettema
Journal:  ISME J       Date:  2022-08-30       Impact factor: 11.217

2.  Construction of microbial chassis for terpenoid discovery.

Authors:  Xiaoxin Zhai; Lun Yao; Yongjin J Zhou
Journal:  Synth Syst Biotechnol       Date:  2022-09-29

3.  An isotopic labeling approach linking natural products with biosynthetic gene clusters.

Authors:  Catherine S McCaughey; Jeffrey A van Santen; Justin J J van der Hooft; Marnix H Medema; Roger G Linington
Journal:  Nat Chem Biol       Date:  2021-12-30       Impact factor: 16.174

4.  Mining of the Catharanthus roseus Genome Leads to Identification of a Biosynthetic Gene Cluster for Fungicidal Sesquiterpenes.

Authors:  Jincai Liang; Tianyue An; Jian-Xun Zhu; Shan Chen; Jian-Hua Zhu; Reuben J Peters; Rongmin Yu; Jiachen Zi
Journal:  J Nat Prod       Date:  2021-10-13       Impact factor: 4.803

Review 5.  Integrating perspectives in actinomycete research: an ActinoBase review of 2020-21.

Authors:  Agustina Undabarrena; Camila F Pereira; Worarat Kruasuwan; Jonathan Parra; Nelly Sélem-Mojica; Kristiina Vind; Jana K Schniete
Journal:  Microbiology (Reading)       Date:  2021-09       Impact factor: 2.777

Review 6.  Genome mining methods to discover bioactive natural products.

Authors:  Katherine D Bauman; Keelie S Butler; Bradley S Moore; Jonathan R Chekan
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

Review 7.  Effective approaches to discover new microbial metabolites in a large strain library.

Authors:  Mitja M Zdouc; Marianna Iorio; Kristiina Vind; Matteo Simone; Stefania Serina; Cristina Brunati; Paolo Monciardini; Arianna Tocchetti; Guadalupe S Zarazúa; Max Crüsemann; Sonia I Maffioli; Margherita Sosio; Stefano Donadio
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

Review 8.  Microbial metabolites: cause or consequence in gastrointestinal disease?

Authors:  Serge Alain Fobofou; Tor Savidge
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2022-03-10       Impact factor: 4.871

Review 9.  Coupling Mass Spectral and Genomic Information to Improve Bacterial Natural Product Discovery Workflows.

Authors:  Max Crüsemann
Journal:  Mar Drugs       Date:  2021-03-05       Impact factor: 5.118

10.  Rational construction of genome-reduced Burkholderiales chassis facilitates efficient heterologous production of natural products from proteobacteria.

Authors:  Jiaqi Liu; Haibo Zhou; Zhiyu Yang; Xue Wang; Hanna Chen; Lin Zhong; Wentao Zheng; Weijing Niu; Sen Wang; Xiangmei Ren; Guannan Zhong; Yan Wang; Xiaoming Ding; Rolf Müller; Youming Zhang; Xiaoying Bian
Journal:  Nat Commun       Date:  2021-07-23       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.