| Literature DB >> 32848442 |
Seyyedeh Mina Hejazian1,2,3, Mohammadreza Ardalan2, Mohammadali M Shoja4, Nasser Samadi1, Sepideh Zununi Vahed2.
Abstract
BACKGROUND: Nephrotic syndrome is a common renal problem with different histopathogenesis. MicroRNAs are reported to be involved in the pathophysiology of the syndrome. The aim of this study was to study the levels of miR-30c and miR-186 in NS patients.Entities:
Keywords: biomarker; focal segmental glomerulosclerosis; membranous glomerulonephritis; microRNAs; nephrotic syndrome; proteinuria
Year: 2020 PMID: 32848442 PMCID: PMC7428378 DOI: 10.2147/IJNRD.S258624
Source DB: PubMed Journal: Int J Nephrol Renovasc Dis ISSN: 1178-7058
Demographic and Baseline Clinical Data
| Characteristics | Total NS Patients | MGN | FSGS Group | P-valuea |
|---|---|---|---|---|
| No. of cases | 60 | 30 | 30 | |
| Age, mean ± SD (years) | 45.76±13 | 46.6± 13 | 44.5± 12.8 | 0.404 |
| BMI (kg/m2) | 27.3±3.4 | 27.4± 3.6 | 27.3± 3.4 | 0.49 |
| GFR(mL/min/1.73m) | 80 (10–137) | 80 (18–137) | 79 (10–130) | 0.324b |
| Proteinuria (mg/24 h) | 2497 (85–15,900) | 3013 (85–15,000) | 1360 (97–15,900) | 0.26b |
| Urea (mg/dL) | 40.7± 19.4 | 38.2±16.5 | 44.2± 20 | 0.18 |
| Uric acid (mg/dL) | 6.5± 1.1 | 6.61± 1.2 | 6.3± 1.1 | 0.94 |
| Serum creatinine (mg/dL) | 1.2 ±0.5 | 2.21±0.55 | 1.2±0.5 | 0.17 |
| Urine creatinine (mg/24h) | 1124.38±407 | 1159.21 ±328 | 1074.63±500 | 0.742 |
Notes: GFR: estimated glomerular filtration rate as measured by GFR [186 × (Creatinine/88.4)−1.154 × (Age)−0.203 × (0.742 if female)] formula. The quantity data are expressed as mean ± SD. aMGN versus FSGS. bMedian (Min-Max) is presented. P-value is based on Mann–Whitney U-test.
Figure 1The expression of miRNA-30c-5p and miRNA-186-5p in plasma and PBMCs. The expression of miRNA-30c-5p in (A) Plasma and (B) PBMCs between the studied groups. The expression of miRNA-186-5p in (C) Plasma and (D) PBMCs between the studied groups. The relative expression (fold change) was calculated by the 2−ΔΔCt method. * and ○ are outliers.
Internal Correlations Between miRNA Levels in Plasma and Peripheral Blood Cells
| Plasma miR-30c | Plasma miR-186 | PBMCs miR-30c | PBMCs miR-186 | |
|---|---|---|---|---|
| Plasma miR-30c | 1 | r= 0.779* | r= −0.191 | r= −0.099 |
| p<0.001 | p= 0.137 | p= 0.449 | ||
| Plasma miR-186 | 1 | r= −0.176 | r=−0.141 | |
| p= 0.167 | p= 0.273 | |||
| PBMCs miR-30c | 1 | r= 0.60* | ||
| p<0.001 |
Note: *Correlation is significant.
Abbreviation: r, correlation coefficient.
Results of the ROC Curve Analysis for Discriminating Potential of PBMC and Plasma miR-30c and miR-186 Levels Among Pairs of the Studied Groups
| AUC | 95% CI | P-value | Sensitivity | Specificity | Youden Index J | Associated Criterion | |
|---|---|---|---|---|---|---|---|
| Plasma FC30c | 0.50 | 0.418 to 0.585 | 0.97 | 87 | 30 | 0.13 | >0.02 |
| Plasma FC186 | 0.53 | 0.419 to 0.591 | 0.92 | 54 | 29 | 0.16 | ≤2.58 |
| PBMC FC30c | 0.65 | 0.565 to 0.728 | 0.001 | 46 | 96 | 0.4158 | >2 |
| PBMC FC186 | 0.45 | 0.418 to 0.582 | 1 | 0 | 100 | 0 | >0 |
| Plasma FC30c | 0.52 | 0.421 to 0.621 | 0.72 | 65 | 54 | 0.1849 | >0.66 |
| Plasma FC186 | 0.61 | 0.499 to 0.707 | 0.07 | 82 | 43 | 0.2472 | >0.19 |
| PBMC FC30c | 0.54 | 0.437 to 0.647 | 0.48 | 89 | 30 | 0.1902 | ≤3.56 |
| PBMC FC186 | 0.5 | 0.400 to 0.600 | 0.0 | 0 | 100 | 0 | >0 |
Abbreviations: AUC, area under the curve; CI, confidence interval; ROC, receiver operating characteristic; NS, nephrotic syndrome; MGN, membranous glomerulonephritis; FSGS, focal segmental glomerulosclerosis; FC, fold change; PFC, plasma FC.
Figure 2The combined ROC curves analysis of miR-30c and miR-186 in plasma and PBMCs samples. (A) Plasma and (B) PBMCs levels of the studied miRNAs could discriminate NS patients from controls. (C, D) ROC curve for the potential of the studied miRNAs in discriminating FSGS from MGN patients in (C) Plasma and (D) PBMCs. AUCs and the corresponding statistics of each miRNA between the groups are shown in Table 3.
The Ten Top Enriched Biological Processes Among Target Genes of miR-30c and miR-186
| GO ID | Biological Process | C | O | E | R | p-valuea |
|---|---|---|---|---|---|---|
| GO:0070671 | Response to interleukin-12 | 49 | 9 | 1.518943743 | 5.925170068 | 1.67E−05 |
| GO:0040029 | Regulation of gene expression, epigenetic | 258 | 22 | 7.997703789 | 2.750789549 | 1.82E−05 |
| GO:0001763 | Morphogenesis of a branching structure | 196 | 18 | 6.075774971 | 2.962585034 | 3.96E−05 |
| GO:0002009 | Morphogenesis of an epithelium | 480 | 32 | 14.87944891 | 2.150617284 | 4.08E−05 |
| GO:0045023 | G0 to G1 transition | 45 | 8 | 1.394948335 | 5.734979424 | 6.30E−05 |
| GO:0031050 | dsRNA processing | 48 | 8 | 1.487,944,891 | 5.37654321 | 1.02E−04 |
| GO:0016569 | Covalent chromatin modification | 468 | 30 | 14.50746269 | 2.067901235 | 1.43E−04 |
| GO:0104004 | Cellular response to environmental stimulus | 320 | 23 | 9.919632606 | 2.318634259 | 1.67E−04 |
| GO:1,990,823 | Response to leukemia inhibitory factor | 95 | 11 | 2.94489093 | 3.735282651 | 1.69E−04 |
| GO:0010608 | Posttranscriptional regulation of gene expression | 486 | 30 | 15.06544202 | 1.9913123 | 2.74E−04 |
| GO:0016071 | mRNA metabolic process | 765 | 79 | 30.80383 | 2.564616 | 8.88E−15 |
| GO:0010629 | Negative regulation of gene expression | 1733 | 127 | 69.78175 | 1.81996 | 1.01E−11 |
| GO:0006412 | Translation | 613 | 62 | 24.68333 | 2.511817 | 2.06E−11 |
| GO:0006396 | RNA processing | 887 | 78 | 35.71633 | 2.183875 | 5.11E−11 |
| GO:0043043 | Peptide biosynthetic process | 636 | 62 | 25.60946 | 2.420981 | 9.58E−11 |
| GO:0051276 | Chromosome organization | 1143 | 92 | 46.02454 | 1.998933 | 1.00E−10 |
| GO:0044265 | Cellular macromolecule catabolic process | 1108 | 88 | 44.61522 | 1.972421 | 5.32E−10 |
| GO:0008380 | RNA splicing | 417 | 46 | 16.79111 | 2.739545 | 5.62E−10 |
| GO:0043604 | Amide biosynthetic process | 766 | 68 | 30.8441 | 2.204636 | 6.64E−10 |
| GO:0006397 | mRNA processing | 487 | 50 | 19.60976 | 2.549751 | 1.20E−09 |
Note: aThe Benjamini–Hochberg adjusted p-value.
Abbreviations: C, total number of genes in the category; O, number of observed target genes in the category; E, number of expected genes in the category; R, fold enrichment.