Literature DB >> 32848222

Tying different knots in a molecular strand.

Fredrik Schaufelberger1, Lucian Pirvu1, David A Leigh2,3, Joakim Halldin Stenlid4, David P August1, Julien Segard1.   

Abstract

The properties of knots are exploited in a range of applications, from shoelaces to the knots used for climbing, fishing and sailing1. Although knots are found in DNA and proteins2, and form randomly in other long polymer chains3,4, methods for tying5 different sorts of knots in a synthetic nanoscale strand are lacking. Molecular knots of high symmetry have previously been synthesized by using non-covalent interactions to assemble and entangle molecular chains6-15, but in such instances the template and/or strand structure intrinsically determines topology, which means that only one type of knot is usually possible. Here we show that interspersing coordination sites for different metal ions within an artificial molecular strand enables it to be tied into multiple knots. Three topoisomers-an unknot (01) macrocycle, a trefoil (31) knot6-15, and a three-twist (52) knot-were each selectively prepared from the same molecular strand by using transition-metal and lanthanide ions to guide chain folding in a manner reminiscent of the action of protein chaperones16. We find that the metal-ion-induced folding can proceed with stereoinduction: in the case of one knot, a lanthanide(III)-coordinated crossing pattern formed only with a copper(I)-coordinated crossing of particular handedness. In an unanticipated finding, metal-ion coordination was also found to translocate an entanglement from one region of a knotted molecular structure to another, resulting in an increase in writhe (topological strain) in the new knotted conformation. The knot topology affects the chemical properties of the strand: whereas the tighter 52 knot can bind two different metal ions simultaneously, the looser 31 isomer can bind only either one copper(I) ion or one lutetium(III) ion. The ability to tie nanoscale chains into different knots offers opportunities to explore the modification of the structure and properties of synthetic oligomers, polymers and supramolecules.

Entities:  

Year:  2020        PMID: 32848222     DOI: 10.1038/s41586-020-2614-0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  10 in total

1.  Self-assembly of a layered two-dimensional molecularly woven fabric.

Authors:  David P August; Robert A W Dryfe; Sarah J Haigh; Paige R C Kent; David A Leigh; Jean-François Lemonnier; Zheling Li; Christopher A Muryn; Leoni I Palmer; Yiwei Song; George F S Whitehead; Robert J Young
Journal:  Nature       Date:  2020-12-16       Impact factor: 49.962

2.  A molecular endless (74) knot.

Authors:  David A Leigh; Jonathan J Danon; Stephen D P Fielden; Jean-François Lemonnier; George F S Whitehead; Steffen L Woltering
Journal:  Nat Chem       Date:  2020-12-14       Impact factor: 24.427

3.  Mechanically axially chiral catenanes and noncanonical mechanically axially chiral rotaxanes.

Authors:  John R J Maynard; Peter Gallagher; David Lozano; Patrick Butler; Stephen M Goldup
Journal:  Nat Chem       Date:  2022-06-27       Impact factor: 24.274

4.  A Co-conformationally "Topologically" Chiral Catenane.

Authors:  Arnau Rodríguez-Rubio; Andrea Savoini; Florian Modicom; Patrick Butler; Stephen M Goldup
Journal:  J Am Chem Soc       Date:  2022-06-28       Impact factor: 16.383

Review 5.  Knotting matters: orderly molecular entanglements.

Authors:  Zoe Ashbridge; Stephen D P Fielden; David A Leigh; Lucian Pirvu; Fredrik Schaufelberger; Liang Zhang
Journal:  Chem Soc Rev       Date:  2022-09-20       Impact factor: 60.615

6.  High capacity topological coding based on nested vortex knots and links.

Authors:  Ling-Jun Kong; Weixuan Zhang; Peng Li; Xuyue Guo; Jingfeng Zhang; Furong Zhang; Jianlin Zhao; Xiangdong Zhang
Journal:  Nat Commun       Date:  2022-05-16       Impact factor: 17.694

Review 7.  Distinctive features and challenges in catenane chemistry.

Authors:  Ho Yu Au-Yeung; Yulin Deng
Journal:  Chem Sci       Date:  2022-02-07       Impact factor: 9.825

8.  Topological digestion drives time-varying rheology of entangled DNA fluids.

Authors:  D Michieletto; P Neill; S Weir; D Evans; N Crist; V A Martinez; R M Robertson-Anderson
Journal:  Nat Commun       Date:  2022-07-28       Impact factor: 17.694

9.  Social Self-Sorting Synthesis of Molecular Knots.

Authors:  Zoe Ashbridge; Olivia M Knapp; Elisabeth Kreidt; David A Leigh; Lucian Pirvu; Fredrik Schaufelberger
Journal:  J Am Chem Soc       Date:  2022-09-06       Impact factor: 16.383

10.  Effects of turn-structure on folding and entanglement in artificial molecular overhand knots.

Authors:  Yiwei Song; Fredrik Schaufelberger; Zoe Ashbridge; Lucian Pirvu; Iñigo J Vitorica-Yrezabal; David A Leigh
Journal:  Chem Sci       Date:  2020-12-08       Impact factor: 9.825

  10 in total

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