Literature DB >> 32846131

Real-Time In-Cell NMR Reveals the Intracellular Modulation of GTP-Bound Levels of RAS.

Qingci Zhao1, Ryu Fujimiya1, Satoshi Kubo1, Christopher B Marshall2, Mitsuhiko Ikura2, Ichio Shimada3, Noritaka Nishida4.   

Abstract

The small guanosine triphosphatase (GTPase) RAS serves as a molecular switch in signal transduction, and its mutation and aberrant activation are implicated in tumorigenesis. Here, we perform real-time, in-cell nuclear magnetic resonance (NMR) analyses of non-farnesylated RAS to measure time courses of the fraction of the active GTP-bound form (fGTP) within cytosol of live mammalian cells. The observed intracellular fGTP is significantly lower than that measured in vitro for wild-type RAS as well as oncogenic mutants, due to both decrease of the guanosine diphosphate (GDP)-GTP exchange rate (kex) and increase of GTP hydrolysis rate (khy). In vitro reconstitution experiments show that highly viscous environments promote a reduction of kex, whereas the increase of khy is stimulated by unidentified cytosolic proteins. This study demonstrates the power of in-cell NMR to directly detect the GTP-bound levels of RAS in mammalian cells, thereby revealing that the khy and kex of RAS are modulated by various intracellular factors.
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  RAS; in-cell NMR; molecular crowding; oncogenic mutants; small GTPase; time-resolved NMR

Mesh:

Substances:

Year:  2020        PMID: 32846131     DOI: 10.1016/j.celrep.2020.108074

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  6 in total

1.  Visualizing Proteins in Mammalian Cells by 19 F NMR Spectroscopy.

Authors:  Wenkai Zhu; Alex J Guseman; Fatema Bhinderwala; Manman Lu; Xun-Cheng Su; Angela M Gronenborn
Journal:  Angew Chem Int Ed Engl       Date:  2022-03-30       Impact factor: 16.823

Review 2.  Radio Signals from Live Cells: The Coming of Age of In-Cell Solution NMR.

Authors:  Enrico Luchinat; Matteo Cremonini; Lucia Banci
Journal:  Chem Rev       Date:  2022-01-21       Impact factor: 72.087

3.  Identification of the nucleotide-free state as a therapeutic vulnerability for inhibition of selected oncogenic RAS mutants.

Authors:  Imran Khan; Akiko Koide; Mariyam Zuberi; Gayatri Ketavarapu; Eric Denbaum; Kai Wen Teng; J Matthew Rhett; Russell Spencer-Smith; G Aaron Hobbs; Ernest Ramsay Camp; Shohei Koide; John P O'Bryan
Journal:  Cell Rep       Date:  2022-02-08       Impact factor: 9.423

4.  KRAS is vulnerable to reversible switch-II pocket engagement in cells.

Authors:  James D Vasta; D Matthew Peacock; Qinheng Zheng; Joel A Walker; Ziyang Zhang; Chad A Zimprich; Morgan R Thomas; Michael T Beck; Brock F Binkowski; Cesear R Corona; Matthew B Robers; Kevan M Shokat
Journal:  Nat Chem Biol       Date:  2022-03-21       Impact factor: 16.174

5.  Cosolute modulation of protein oligomerization reactions in the homeostatic timescale.

Authors:  Borja Mateos; Ganeko Bernardo-Seisdedos; Valentin Dietrich; Nicanor Zalba; Gabriel Ortega; Francesca Peccati; Gonzalo Jiménez-Osés; Robert Konrat; Martin Tollinger; Oscar Millet
Journal:  Biophys J       Date:  2021-03-29       Impact factor: 4.033

6.  A saturation-mutagenesis analysis of the interplay between stability and activation in Ras.

Authors:  Frank Hidalgo; Laura M Nocka; Neel H Shah; Kent Gorday; Naomi R Latorraca; Pradeep Bandaru; Sage Templeton; David Lee; Deepti Karandur; Jeffrey G Pelton; Susan Marqusee; David Wemmer; John Kuriyan
Journal:  Elife       Date:  2022-03-11       Impact factor: 8.713

  6 in total

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