Caitrin W McDonough1, Kyle Babcock1, Kristen Chucri1, Dana C Crawford2, Jiang Bian3, François Modave3, Rhonda M Cooper-DeHoff1,4, William R Hogan3. 1. Department of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, Gainesville, Florida, USA. 2. Department of Population and Quantitative Health Sciences, Cleveland Institute for Computational Biology, Case Western Reserve University, Cleveland, Ohio, USA. 3. Department of Health Outcomes & Biomedical Informatics, College of Medicine, University of Florida, Gainesville, Florida, USA. 4. Division of Cardiovascular Medicine, Department of Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA.
Abstract
PURPOSE: Computable phenotypes are constructed to utilize data within the electronic health record (EHR) to identify patients with specific characteristics; a necessary step for researching a complex disease state. We developed computable phenotypes for resistant hypertension (RHTN) and stable controlled hypertension (HTN) based on the National Patient-Centered Clinical Research Network (PCORnet) common data model (CDM). The computable phenotypes were validated through manual chart review. METHODS: We adapted and refined existing computable phenotype algorithms for RHTN and stable controlled HTN to the PCORnet CDM in an adult HTN population from the OneFlorida Clinical Research Consortium (2015-2017). Two independent reviewers validated the computable phenotypes through manual chart review of 425 patient records. We assessed precision of our computable phenotypes through positive predictive value (PPV) and test validity through interrater reliability (IRR). RESULTS: Among the 156 730 HTN patients in our final dataset, the final computable phenotype algorithms identified 24 926 patients with RHTN and 19 100 with stable controlled HTN. The PPV for RHTN in patients randomly selected for validation of the final algorithm was 99.1% (n = 113, CI: 95.2%-99.9%). The PPV for stable controlled HTN in patients randomly selected for validation of the final algorithm was 96.5% (n = 113, CI: 91.2%-99.0%). IRR analysis revealed a raw percent agreement of 91% (152/167) with Cohen's kappa statistic = 0.87. CONCLUSIONS: We constructed and validated a RHTN computable phenotype algorithm and a stable controlled HTN computable phenotype algorithm. Both algorithms are based on the PCORnet CDM, allowing for future application to epidemiological and drug utilization based research.
PURPOSE: Computable phenotypes are constructed to utilize data within the electronic health record (EHR) to identify patients with specific characteristics; a necessary step for researching a complex disease state. We developed computable phenotypes for resistant hypertension (RHTN) and stable controlled hypertension (HTN) based on the National Patient-Centered Clinical Research Network (PCORnet) common data model (CDM). The computable phenotypes were validated through manual chart review. METHODS: We adapted and refined existing computable phenotype algorithms for RHTN and stable controlled HTN to the PCORnet CDM in an adult HTN population from the OneFlorida Clinical Research Consortium (2015-2017). Two independent reviewers validated the computable phenotypes through manual chart review of 425 patient records. We assessed precision of our computable phenotypes through positive predictive value (PPV) and test validity through interrater reliability (IRR). RESULTS: Among the 156 730 HTN patients in our final dataset, the final computable phenotype algorithms identified 24 926 patients with RHTN and 19 100 with stable controlled HTN. The PPV for RHTN in patients randomly selected for validation of the final algorithm was 99.1% (n = 113, CI: 95.2%-99.9%). The PPV for stable controlled HTN in patients randomly selected for validation of the final algorithm was 96.5% (n = 113, CI: 91.2%-99.0%). IRR analysis revealed a raw percent agreement of 91% (152/167) with Cohen's kappa statistic = 0.87. CONCLUSIONS: We constructed and validated a RHTN computable phenotype algorithm and a stable controlled HTN computable phenotype algorithm. Both algorithms are based on the PCORnet CDM, allowing for future application to epidemiological and drug utilization based research.
Authors: Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde Journal: J Biomed Inform Date: 2008-09-30 Impact factor: 6.317
Authors: Abel N Kho; John P Cashy; Kathryn L Jackson; Adam R Pah; Satyender Goel; Jörn Boehnke; John Eric Humphries; Scott Duke Kominers; Bala N Hota; Shannon A Sims; Bradley A Malin; Dustin D French; Theresa L Walunas; David O Meltzer; Erin O Kaleba; Roderick C Jones; William L Galanter Journal: J Am Med Inform Assoc Date: 2015-06-23 Impact factor: 4.497
Authors: Mark J Pletcher; Valy Fontil; Thomas Carton; Kathryn M Shaw; Myra Smith; Sujung Choi; Jonathan Todd; Alanna M Chamberlain; Emily C O'Brien; Madelaine Faulkner; Carlos Maeztu; Gregory Wozniak; Michael Rakotz; Christina M Shay; Rhonda M Cooper-DeHoff Journal: Circ Cardiovasc Qual Outcomes Date: 2020-03-06
Authors: David A Calhoun; Daniel Jones; Stephen Textor; David C Goff; Timothy P Murphy; Robert D Toto; Anthony White; William C Cushman; William White; Domenic Sica; Keith Ferdinand; Thomas D Giles; Bonita Falkner; Robert M Carey Journal: Hypertension Date: 2008-04-07 Impact factor: 10.190
Authors: Henry Krum; Markus Schlaich; Rob Whitbourn; Paul A Sobotka; Jerzy Sadowski; Krzysztof Bartus; Boguslaw Kapelak; Anthony Walton; Horst Sievert; Suku Thambar; William T Abraham; Murray Esler Journal: Lancet Date: 2009-03-28 Impact factor: 79.321
Authors: Rachael L Fleurence; Lesley H Curtis; Robert M Califf; Richard Platt; Joe V Selby; Jeffrey S Brown Journal: J Am Med Inform Assoc Date: 2014-05-12 Impact factor: 4.497
Authors: Lisa Bastarache; Jeffrey S Brown; James J Cimino; David A Dorr; Peter J Embi; Philip R O Payne; Adam B Wilcox; Mark G Weiner Journal: Learn Health Syst Date: 2021-10-14
Authors: William R Hogan; Elizabeth A Shenkman; Temple Robinson; Olveen Carasquillo; Patricia S Robinson; Rebecca Z Essner; Jiang Bian; Gigi Lipori; Christopher Harle; Tanja Magoc; Lizabeth Manini; Tona Mendoza; Sonya White; Alex Loiacono; Jackie Hall; Dave Nelson Journal: J Am Med Inform Assoc Date: 2022-03-15 Impact factor: 4.497