Hyouk-Bum Kwon1,2, Duncan I Mackie2, Remy Bonnavion3, Alan Le Mercier3, Christian S M Helker1,4, Taekwon Son5, Stefan Guenter6, D Stephen Serafin2, Kyu-Won Kim5, Stefan Offermanns3, Kathleen M Caron2, Didier Y R Stainier1. 1. Department of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, 61231, Germany. 2. Department of Cell Biology & Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States. 3. Department of Pharmacology, Max Planck Institute for Heart and Lung Research, Bad Nauheim, 61231, Germany. 4. Philipps-University Marburg, Faculty of Biology, Cell Signaling and Dynamics, Marburg, 35043, Germany. 5. Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea. 6. ECCPS Bioinformatics and Deep Sequencing Platform, Max Planck Institute for Heart and Lung Research, Bad Nauheim, 61231, Germany.
Abstract
The G protein-coupled receptor 182 (GPR182) is an orphan GPCR, the expression of which is enriched in embryonic endothelial cells (ECs). However, the physiological role and molecular mechanism of action of GPR182 are unknown. Here, we show that GPR182 negatively regulates definitive hematopoiesis in zebrafish and mice. In zebrafish, gpr182 expression is enriched in the hemogenic endothelium (HE), and gpr182 -/- display an increased expression of HE and hematopoietic stem cell (HSC) marker genes. Notably, we find an increased number of myeloid cells in gpr182 -/- compared to wild-type. Further, by time-lapse imaging of zebrafish embryos during the endothelial-to-hematopoietic transition, we find that HE/HSC cell numbers are increased in gpr182 -/- compared to wild-type. GPR182 -/- mice also exhibit an increased number of myeloid cells compared to wild-type, indicating a conserved role for GPR182 in myelopoiesis. Using cell-based small molecule screening and transcriptomic analyses, we further find that GPR182 regulates the leukotriene B4 (LTB4) biosynthesis pathway. Taken together, these data indicate that GPR182 is a negative regulator of definitive hematopoiesis in zebrafish and mice, and provide further evidence for LTB4 signaling in HSC biology.
The G protein-coupled receptor 182 (GPR182) is an orphan GPCR, the expression of which is enriched in embryonic endothelial cells (ECs). However, the physiological role and molecular mechanism of action of GPR182 are unknown. Here, we show that GPR182 negatively regulates definitive hematopoiesis in zebrafish and mice. In zebrafish, gpr182 expression is enriched in the hemogenic endothelium (HE), and gpr182 -/- display an increased expression of HE and hematopoietic stem cell (HSC) marker genes. Notably, we find an increased number of myeloid cells in gpr182 -/- compared to wild-type. Further, by time-lapse imaging of zebrafish embryos during the endothelial-to-hematopoietic transition, we find that HE/HSC cell numbers are increased in gpr182 -/- compared to wild-type. GPR182 -/- mice also exhibit an increased number of myeloid cells compared to wild-type, indicating a conserved role for GPR182 in myelopoiesis. Using cell-based small molecule screening and transcriptomic analyses, we further find that GPR182 regulates the leukotriene B4 (LTB4) biosynthesis pathway. Taken together, these data indicate that GPR182 is a negative regulator of definitive hematopoiesis in zebrafish and mice, and provide further evidence for LTB4 signaling in HSC biology.
G-protein coupled receptors
(GPCRs) are the most tractable class of proteins, with ∼30–40%
of all drugs currently on the market targeting their activity.[1−3] To date, many GPCRs remain categorized as “orphan”
GPCRs, sparking much interest and investment to discover selective
modulators of their activity for the development of novel therapeutics.
As such, it is critical to define the function and molecular mechanism
of these orphan receptors to understand the physiological impact of
their inhibition. GPCRs constitute the largest receptor family and
are involved in a variety of physiological processes that range from
sensing external signals including light, odor, taste, and touch to
mediating signal transduction pathways, such as in the autonomic nervous
system and during inflammation.[4] However,
the role of GPCRs in hematopoiesis remains poorly characterized.Historically, zebrafish have been recognized as an excellent genetic
model system to study hematopoiesis because of a high level of similarity
with mammals.[5] Namely, zebrafish and mammals
share all major types of blood cells, and these cells are produced
via similar processes called primitive and definitive hematopoiesis.[6] In zebrafish, primitive hematopoiesis occurs
in the anterior lateral plate mesoderm, which gives rise to myeloid
cells, and in the posterior lateral plate mesoderm, which gives rise
to primitive erythrocytes.[5] Definitive
hematopoiesis produces hematopoietic stem cells (HSCs) capable of
self-renewing and contributing to all blood lineages.[7] HSCs first appear at approximately 30–32 h post
fertilization (hpf) from hemogenic endothelial cells located at the
ventral wall of the dorsal aorta (VDA), which is functionally equivalent
to the aorta-gonad-mesonephros (AGM) region in amniotes.[8,9] HSCs (marked by runx1 and c-myb expression) migrate to the caudal hematopoietic tissue (CHT) where
they expand and further develop before moving to the kidney, which
is the zebrafish equivalent to the mammalian bone marrow.[10]GPR182 is a class A orphan GPCR. Initially,
it was thought that
GPR182 was a putative adrenomedullin receptor; however, it was later
shown that adrenomedullin signals through a different GPCR complex.[11]Gpr182 is highly expressed
in developing mouse and zebrafish endothelium and enriched in mammary
tumor endothelium compared to normal mammary endothelium.[12−14] Interestingly, gpr182 expression is significantly
altered in a zebrafish model of myeloid leukemia.[15] These reports suggest that Gpr182 functions in hematopoiesis
in healthy and disease conditions.Here, we show that GPR182
plays a negative function in definitive
hematopoiesis. We found that gpr182–/– zebrafish embryos exhibit increased HE/HSC formation. In addition,
we observed that loss of GPR182 in zebrafish and mice leads to an
increase in the number of myeloid cells. Furthermore, we found, via
drug screening and transcriptome analysis, that GPR182 regulates the
leukotriene biosynthesis pathway. Overall, these data indicate that
GPR182 negatively regulates definitive hematopoiesis and myelopoiesis
in part through modulation of leukotriene biosynthesis.
Results
gpr182 Is Highly Expressed in Endothelial Cells
To understand
the role of gpr182 during development,
we first examined its expression pattern by WISH using zebrafish embryos
at different stages (Figure A–I). gpr182 appears to be specifically
expressed in blood vessels in embryos at 30, 48, and 60 hpf (Figure A, D, G). Interestingly, gpr182 exhibits a heterogeneous expression pattern between
different vascular beds and different stages. To pinpoint the spatiotemporal
expression pattern of gpr182, we performed WISH for gpr182 and immunofluorescent (IF) staining for enhanced
green fluorescent protein (EGFP) on Tg(fli1a: EGFP) embryos which express EGFP specifically within ECs.[16] As observed in whole embryos (Figure A–I) as well as on sections (Figure J–Q), at 30
and 48 hpf, gpr182 appears strongly expressed in
the vicinity of the VDA (red arrows) and PCV (yellow arrows) in the
trunk (Figure B, E,
J, K, L, M) and in the caudal vein plexus (CVP) in the tail (Figure C, F, N, O, P, Q).
By 60 hpf, the expression level of gpr182 is decreased
in the trunk (Figure H) and maintained in the tail (Figure I). Using another EC reporter line, TgBAC(etsrp:EGFP), we sorted ECs and non-ECs and performed quantitative reverse transcription
(qPCR) for gpr182 (Figure R). Consistent with WISH data, gpr182 is specifically expressed in ECs (Figure S).
Figure 1
gpr182 is highly expressed
in endothelial cells
in zebrafish. (A–I) Brightfield images of whole-mount in situ hybridization (WISH) for gpr182 expression at 30 (A–C), 48 (D–F), and 60 (G–I)
hpf. The red and green boxes in the left panels (A, D, G) are enlarged
in the middle (B, E, H) and right (C, F, L) panels, respectively.
Red and yellow arrows point to cells exhibiting strong expression
of gpr182 in the ventral part of the DA (red) and
in the PCV (yellow), respectively. Anterior to the left, dorsal to
the top. (J–Q) Images of sectioned embryos after WISH for gpr182 expression in 36 hpf Tg(fli1a:EGFP) animals in the trunk (J–M) and tail (N–Q) region.
The red boxes in panels J, K, N, and O are enlarged in their respective
bottom panels (L, M, P, Q). Red and yellow arrows point to cells exhibiting
strong expression of gpr182 in the ventral part of
the DA (red) and in the PCV (yellow), respectively. (R) Schematic
representation of EC sorting from 30 hpf TgBAC(etsrp:EGFP) embryos. (S) qPCR analysis of kdrl, fli1rs, and gpr182 mRNA expression levels in isolated
ECs and non ECs from 30 hpf TgBAC(etsrp:EGFP) embryos. N = 6 biologically independent samples. A delta delta Ct
(ΔΔCt) analysis was performed and EC expression levels
were set at 1. Data are mean ± s.d., and a two-tailed Student’s t test was used to calculate P values.
The threshold cycle (Ct) values are in Table S2. (T) Heatmap analysis of gpr182 expression in nonhemogenic
ECs (kdrl+/runx1–), specified
HECs (HE, kdrl+/runx1+), and potential
HSCs (kdrl–/runx1+) sorted
from 28 hpf Tg(kdrl:mCherry/runx1:EGFP) embryos.[18] Heatmap was generated according to z-score of reads per kilobase per million reads (RPKMs) of each gene
in multiple samples. RPKM and z-scores are summarized
in Figure S1(A). (U) Schematic illustration
showing gpr182 expression in ECs in the trunk (30
hpf) and tail (60 hpf) region. Scale bars, 200 μm (A, D, G),
50 μm (B, C, E, F, H, I, J–Q). CVP, caudal vein plexus;
DA, dorsal aorta; ISV, intersegmental vessel; NC, notochord; NT, neural
tube; PCV, posterior cardinal vein.
gpr182 is highly expressed
in endothelial cells
in zebrafish. (A–I) Brightfield images of whole-mount in situ hybridization (WISH) for gpr182 expression at 30 (A–C), 48 (D–F), and 60 (G–I)
hpf. The red and green boxes in the left panels (A, D, G) are enlarged
in the middle (B, E, H) and right (C, F, L) panels, respectively.
Red and yellow arrows point to cells exhibiting strong expression
of gpr182 in the ventral part of the DA (red) and
in the PCV (yellow), respectively. Anterior to the left, dorsal to
the top. (J–Q) Images of sectioned embryos after WISH for gpr182 expression in 36 hpf Tg(fli1a:EGFP) animals in the trunk (J–M) and tail (N–Q) region.
The red boxes in panels J, K, N, and O are enlarged in their respective
bottom panels (L, M, P, Q). Red and yellow arrows point to cells exhibiting
strong expression of gpr182 in the ventral part of
the DA (red) and in the PCV (yellow), respectively. (R) Schematic
representation of EC sorting from 30 hpf TgBAC(etsrp:EGFP) embryos. (S) qPCR analysis of kdrl, fli1rs, and gpr182 mRNA expression levels in isolated
ECs and non ECs from 30 hpf TgBAC(etsrp:EGFP) embryos. N = 6 biologically independent samples. A delta delta Ct
(ΔΔCt) analysis was performed and EC expression levels
were set at 1. Data are mean ± s.d., and a two-tailed Student’s t test was used to calculate P values.
The threshold cycle (Ct) values are in Table S2. (T) Heatmap analysis of gpr182 expression in nonhemogenic
ECs (kdrl+/runx1–), specified
HECs (HE, kdrl+/runx1+), and potential
HSCs (kdrl–/runx1+) sorted
from 28 hpf Tg(kdrl:mCherry/runx1:EGFP) embryos.[18] Heatmap was generated according to z-score of reads per kilobase per million reads (RPKMs) of each gene
in multiple samples. RPKM and z-scores are summarized
in Figure S1(A). (U) Schematic illustration
showing gpr182 expression in ECs in the trunk (30
hpf) and tail (60 hpf) region. Scale bars, 200 μm (A, D, G),
50 μm (B, C, E, F, H, I, J–Q). CVP, caudal vein plexus;
DA, dorsal aorta; ISV, intersegmental vessel; NC, notochord; NT, neural
tube; PCV, posterior cardinal vein.The HE emerges within the VDA around 30 hpf and undergoes a process
called endothelial to hematopoietic transition (EHT) to give rise
to HSCs.[17] In this process, HE cells extrude
from the VDA and migrate to the CHT. On the basis of the expression
pattern of gpr182 in the trunk and tail, we hypothesized
that gpr182 was highly enriched in the HE. To test
this hypothesis, we used previously reported RNA seq data to assess
the levels of gpr182 expression in the HE (kdrl+/runx1+), nonhemogenic EC (kdrl+/runx1-), and HSC (kdrl-/runx1+) sorted from Tg(kdrl:mCherry);Tg(runx1:EGFP) embryos at 28 hpf.[18] Interestingly, gpr182 is highly enriched in the HE (Figure T, U, Figure S1A). These data support a role for gpr182 in definitive
hematopoiesis during zebrafish development.
To
understand the role of GPR182 in zebrafish, we generated gpr182 mutants (gpr182) using the CRISPR-Cas9 technology.[19,20] We designed guide RNAs (gRNAs) targeting the region that encodes
the seventh transmembrane domain of Gpr182 (Figure A) and identified an allele carrying an 11
nucleotide deletion and predicted to encode a protein lacking the
seventh transmembrane and intracellular domains (Figure B, Figure S1B). High resolution melt analysis confirmed the genotype
of gpr182zebrafish (Figure C).
Figure 2
Zebrafish gpr182 mutant embryos exhibit wild-type-like
vascular development. (A) Partial DNA sequence of the gpr182 allele (bns289) generated
for this study. Red arrow points to the mutated region. (B) Schematic
representation of wild-type and mutant Gpr182. Green boxes indicate
the transmembrane domains (TM). Red hexagon indicates C-terminus.
(C) High-resolution melt analysis (HRMA) of gpr182, gpr182, and gpr182 DNA. (D) Representative brightfield
images of 72 hpf wild-type and gpr182 larvae. (E) Confocal images of 72
hpf Tg(kdrl:Hsa.HRASmCherry) wild-type and gpr182 larvae.
(F) Microangiography of 72 hpf Tg(kdrl:Hsa.HRASmCherry) wild-type and gpr182 larvae injected intravascularly with 2000 kDa FITC-dextran;
lateral views. Scale bars, 200 μm (D, F), 50 μm (F). Anterior
to the left, dorsal to the top.
Zebrafishgpr182 mutant embryos exhibit wild-type-like
vascular development. (A) Partial DNA sequence of the gpr182 allele (bns289) generated
for this study. Red arrow points to the mutated region. (B) Schematic
representation of wild-type and mutant Gpr182. Green boxes indicate
the transmembrane domains (TM). Red hexagon indicates C-terminus.
(C) High-resolution melt analysis (HRMA) of gpr182, gpr182, and gpr182 DNA. (D) Representative brightfield
images of 72 hpf wild-type and gpr182 larvae. (E) Confocal images of 72
hpf Tg(kdrl:Hsa.HRASmCherry) wild-type and gpr182 larvae.
(F) Microangiography of 72 hpf Tg(kdrl:Hsa.HRASmCherry) wild-type and gpr182 larvae injected intravascularly with 2000 kDa FITC-dextran;
lateral views. Scale bars, 200 μm (D, F), 50 μm (F). Anterior
to the left, dorsal to the top.gpr182 embryos exhibit a wild-type morphology and develop into adulthood
without any obvious defects (Figure D, Figure S1C). Using confocal
microscopy on an endothelial reporter line, Tg(kdrl:Hsa.HRASmCherry), we found that gpr182 larvae display a wild-type like vascular morphology (Figure E). Considering that
blood flow is critical for definitive hematopoiesis,[21] we next examined blood circulation in gpr182 embryos using microangiography
by injecting FITC-dextran into blood vessels. No circulation defect
was observed in gpr182 mutants compared to wild-type
(Figure F).
Gpr182
Mediates Developmental Hematopoiesis via Regulation of
HE/HSC Formation and Myeloid Cell Differentiation
Since gpr182 is highly expressed in the HE at 30 hpf (red arrows
in Figure B, E, L,
M, T), we investigated its role by comparing the transcriptome of
wild-type versus gpr182Tg(kdrl:Hsa.HRASmCherry) positive ECs at 30
hpf (Figure A, B).
For this analysis, we used the Database for Annotation, Visualization
and Integrated Discovery (DAVID) bioinformatics resource, which allowed
us to delineate the biological significance of gene changes due to
loss of Gpr182 function.[22] From this analysis,
we found that gpr182 ECs exhibit an increased gene signature for the innate immune
response, immune system processes, stress response, and chemotaxis.
Importantly, gpr182ECs also exhibited an increased expression of genes associated
with definitive hematopoiesis and myeloid cell differentiation compared
to wild-type ECs (Figure B). Conversely, genes related to blood circulation, regeneration,
and cardiac conduction were down-regulated in gpr182 ECs compared to wild-type
ECs (Figure B).
Figure 3
Transcriptomic
analysis suggests an increase in definitive myelopoiesis
in zebrafish gpr182 mutant embryos. (A) Schematic
representation of the transcriptomic analysis. (B, C) Pathway analysis
(B) and volcano plot (C) from RNA seq analysis of sorted ECs from
30 hpf wild-type and gpr182 embryos. (D) Heatmap analysis of ECs from 30 hpf wild-type
and gpr182 embryos, and from whole embryos at 30 and 48 hpf. Heatmap
was generated according to z-score of reads per kilobase
per million reads (RPKMs) of each gene in multiple samples. RPKM and z-scores are summarized in Table S3. (E) Relative expression of myeloid markers in wild-type and gpr182 embryos
at 30 and 48 hpf.
Transcriptomic
analysis suggests an increase in definitive myelopoiesis
in zebrafishgpr182 mutant embryos. (A) Schematic
representation of the transcriptomic analysis. (B, C) Pathway analysis
(B) and volcano plot (C) from RNA seq analysis of sorted ECs from
30 hpf wild-type and gpr182 embryos. (D) Heatmap analysis of ECs from 30 hpf wild-type
and gpr182 embryos, and from whole embryos at 30 and 48 hpf. Heatmap
was generated according to z-score of reads per kilobase
per million reads (RPKMs) of each gene in multiple samples. RPKM and z-scores are summarized in Table S3. (E) Relative expression of myeloid markers in wild-type and gpr182 embryos
at 30 and 48 hpf.Considering that gpr182 expression is enriched
in the HE, we were particularly interested in gpr182 EC-specific hematopoiesis-related
gene signatures, especially those relating to myeloid cell differentiation
and definitive hematopoiesis. We found that gpr182 ECs exhibited an increased
expression of macrophage markers such as mfap4, mpeg1.1, cxcr3.2, and csf3r as well as of genes encoding transcription factors that regulate
myeloid differentiation such as spi1a, spi1b, and irf8 compared to wild-type ECs (Figure C, D). Further, gpr182ECs exhibited an increased
expression of HE/HSC markers such as runx1, gata2b, and cmyb compared to wild-type
ECs (Figure C, D).
Altogether, these data suggest that Gpr182 regulates myeloid cell
differentiation and HE/HSC formation during zebrafish development.Interestingly, while we did not observe a difference in myeloid
marker gene expression between wild-type and gpr182 embryos at 30 hpf,
we did observe an increase at 48 hpf in gpr182 embryos compared to wild-type
(Figure D, E). These
data, together with the EC-specific transcriptomic data, suggest that
ECs from gpr182 embryos, especially those within the HE, exhibit an increased
potential to differentiate into myeloid cells at 48 hpf.
Zebrafish gpr182 Mutant Embryos Exhibit an
Increased Number of HE/HSCs in the Ventral Wall of the Dorsal Aorta
Next, we wanted to examine Gpr182 regulation of HE/HSC formation
in more detail. First, we visualized HE/HSCs by performing WISH for
the HE/HSC marker cmyb. We found that gpr182 embryos exhibit an
increase in cmyb expression in the trunk compared
to wild-type (white arrows, Figure A). In addition, consistent with the WISH data, we
observed a 1.36 fold increase in cmyb mRNA expression
levels in gpr182 embryos compared to wild-type using qPCR (Figure B). Next, we performed confocal
imaging using a HE/HSC reporter line, Tg(cd41:EGFP); Tg(kdrl:Hsa.HRASmCherry), at 50 hpf. We found that gpr182 embryos exhibit a 1.75 fold increase in the number of cd41/kdrl double-positive HE/HSC cells
(WT:22.1; gpr182: 38.84) in the trunk (white arrows, Figure C, D) compared to wild-type. Since HE/HSCs
form in the VDA and migrate to the CHT after an endothelial-to-hematopoietic
transition (EHT),[7,23] we examined HSCs in the CHT after
72 hpf and observed an increase in the number of HSC in the CHT of gpr182 compared
to wild-type using both WISH (Figure E) and confocal imaging (Figure F, G). These data suggest that gpr182 negatively regulates HE/HSC formation during development.
Figure 4
Zebrafish gpr182 mutant embryos exhibit increased
HE and HSC formation. (A) Brightfield images of WISH for cmyb expression in wild-type and gpr182 embryos at 36 hpf. White arrows
point to cmyb positive cells in the trunk. N/N, number of embryos showing representative
phenotype/total number of embryos examined. Two independent experiments
were performed with similar results. (B) qPCR analysis of cmyb mRNA levels from wild-type and gpr182 embryos at 36 hpf. N = 5 biological replicates. A delta delta Ct (ΔΔCt)
analysis was performed and wild-type expression levels were set at
1. Data are mean ± s.d., and a two-tailed Student’s t test was used to calculate P values. (C) Confocal images
of Tg(cd41:EGFP); Tg(kdrl:Hsa.HRASmCherry) wild-type
and gpr182 embryos in the trunk at 48–52 hpf. White arrows point
to cd41/kdrl double-positive cells
in the trunk. (D) Number of cd4l/kdrl double-positive cells in the trunk (six somites). Wild-type N = 10, gpr182N = 13. N obtained from
three independent clutches. (E) Brightfield images of WISH for cmyb expression in wild-type and gpr182 larvae at 96 hpf. N/N, number of embryos showing representative
phenotype/total number of embryos examined. Two independent experiments
were performed with similar results. (F) Confocal images of Tg(cd41: EGFP); Tg(kdrl: Hsa.HRASmCherry) wild-type and gpr182 larvae
in the tail at 72 hpf. White arrows point to weak EGFP positive HSCs
in the tail. (G) Number of weak cd41:EGFP positive
HSCs in the tail (4 somites) of wild-type and gpr182 embryos. Wild-type
(N = 12) and gpr182 (N = 17), from
three independent clutches. (H) Time-lapse confocal images of Tg(cmyb:GFP); Tg(kdrl:Hsa.HRASmCherry) wild-type and gpr182 embryos
at 36 hpf in the trunk. White arrows point to cmyb/kdrl double-positive HE/HSCs. The red, orange,
green, blue and purple boxes in the above panels are enlarged in the
bottom panels, respectively. Yellow (1′–2′′)
and white (3′–5′′) arrowheads in the bottom
panels point to HE/HSCs of the wild-type and gpr182 embryo, respectively.
(I) Confocal images of Tg(cmyb:GFP); Tg(kdrl:Hsa.HRASmCherry) uninjected and gpr182 mRNA injected embryos at
36 hpf. White arrows point to cmyb/kdrl double positive cells in the trunk. (J) Quantification of cmyb/kdrl double-positive cells in the
trunk (six somites). Uninjected embryos (N = 7) and gpr182 wild-type mRNA injected embryos (N = 8), from three independent clutches. Data are mean ± s.d..
A two-tailed Student’s t test was used to
calculate p-values. Scale bars, 50 μm. Anterior
to the left, dorsal to the top. DA, dorsal aorta; CV, caudal vein;
PCV, posterior cardinal vein; VDA, ventral wall of DA.
Zebrafishgpr182 mutant embryos exhibit increased
HE and HSC formation. (A) Brightfield images of WISH for cmyb expression in wild-type and gpr182 embryos at 36 hpf. White arrows
point to cmyb positive cells in the trunk. N/N, number of embryos showing representative
phenotype/total number of embryos examined. Two independent experiments
were performed with similar results. (B) qPCR analysis of cmyb mRNA levels from wild-type and gpr182 embryos at 36 hpf. N = 5 biological replicates. A delta delta Ct (ΔΔCt)
analysis was performed and wild-type expression levels were set at
1. Data are mean ± s.d., and a two-tailed Student’s t test was used to calculate P values. (C) Confocal images
of Tg(cd41:EGFP); Tg(kdrl:Hsa.HRASmCherry) wild-type
and gpr182 embryos in the trunk at 48–52 hpf. White arrows point
to cd41/kdrl double-positive cells
in the trunk. (D) Number of cd4l/kdrl double-positive cells in the trunk (six somites). Wild-type N = 10, gpr182N = 13. N obtained from
three independent clutches. (E) Brightfield images of WISH for cmyb expression in wild-type and gpr182 larvae at 96 hpf. N/N, number of embryos showing representative
phenotype/total number of embryos examined. Two independent experiments
were performed with similar results. (F) Confocal images of Tg(cd41: EGFP); Tg(kdrl: Hsa.HRASmCherry) wild-type and gpr182 larvae
in the tail at 72 hpf. White arrows point to weak EGFP positive HSCs
in the tail. (G) Number of weak cd41:EGFP positive
HSCs in the tail (4 somites) of wild-type and gpr182 embryos. Wild-type
(N = 12) and gpr182 (N = 17), from
three independent clutches. (H) Time-lapse confocal images of Tg(cmyb:GFP); Tg(kdrl:Hsa.HRASmCherry) wild-type and gpr182 embryos
at 36 hpf in the trunk. White arrows point to cmyb/kdrl double-positive HE/HSCs. The red, orange,
green, blue and purple boxes in the above panels are enlarged in the
bottom panels, respectively. Yellow (1′–2′′)
and white (3′–5′′) arrowheads in the bottom
panels point to HE/HSCs of the wild-type and gpr182 embryo, respectively.
(I) Confocal images of Tg(cmyb:GFP); Tg(kdrl:Hsa.HRASmCherry) uninjected and gpr182 mRNA injected embryos at
36 hpf. White arrows point to cmyb/kdrl double positive cells in the trunk. (J) Quantification of cmyb/kdrl double-positive cells in the
trunk (six somites). Uninjected embryos (N = 7) and gpr182 wild-type mRNA injected embryos (N = 8), from three independent clutches. Data are mean ± s.d..
A two-tailed Student’s t test was used to
calculate p-values. Scale bars, 50 μm. Anterior
to the left, dorsal to the top. DA, dorsal aorta; CV, caudal vein;
PCV, posterior cardinal vein; VDA, ventral wall of DA.Since we observed an increase in the number of cd41/kdrl double-positive cells in the VDA during EHT
in gpr182 embryos compared to wild-type (white arrows, Figure C, D), we were interested in investigating
how Gpr182 regulates HE/HSC formation at the cellular level. Thus,
we performed time-lapse confocal imaging using another HSC reporter
line, Tg(cmyb:EGFP); Tg(kdrl:Hras-mChrry), starting
at 36 hpf. Notably, we observed within the VDA during EHT an increased
number of HE/HSCs in gpr182 embryos (Figure H (3′–5′′), compared to wild-type (Figure H (1′–2′′)).
Furthermore, we observed a significant reduction in HE/HSC number
in the trunk of embryos injected with gpr182 mRNA
compared to uninjected embryos (Figure I, J). Taken together, these data support the hypothesis
that Gpr182 negatively regulates definitive hematopoiesis by inhibiting
HE/HSC formation.
Zebrafish gpr182 Mutant
Embryos Exhibit an
Increased Number of Myeloid Cells
Due to the increase in
myeloid differentiation marker gene expression observed in gpr182 ECs
(Figure B, C, D),
we investigated whether gpr182 embryos had an increase in myeloid cell numbers compared to
wild-type. First, using the Tg(mpeg1:mCherry) macrophage
reporter line, we found at 60 hpf a 1.59 fold increase in average
macrophage numbers (wild-type, 31; gpr182, 49.33) in gpr182 embryos compared to
wild-type (white arrows, Figure A, B). Second, using the Tg(lyz:EGFP) neutrophil reporter line, we found at 72 hpf a 1.5 fold increase
in average neutrophil numbers (wild-type, 51; gpr182, 76.69) in gpr182 larvae
compared to wild-type (white arrows, Figure C, D). Taken together, these data, along
with the observation of increased myeloid marker gene expression in gpr182 embryos
at 48 but not 30 hpf (Figure D, E), support the hypothesis that gpr182 negatively regulates myeloid cell differentiation.
Figure 5
Zebrafish and mouse gpr182 mutants exhibit an
increased number of myeloid cells. (A) Confocal images of 60 hpf Tg(mpeg1:mCherry) wild-type and gpr182 embryos in the tail. White
arrows point to mpeg1:mCherry positive cells. (B)
Number of mpeg1:mCherry positive cells in tail (six
somites). Wild-type (N = 7), gpr182(N =
9), from three independent clutches. (C) Confocal images of 72 hpf Tg(lyz:EGFP); Tg(kdrl:Hsa.HRASmCherry) wild-type
and gpr182 larvae in the tail. White arrows point to lyz:EGFP positive cells. (D) Number of lyz:EGFP positive
cells in the tail (six somites). Wild-type embryos (N = 13), gpr182 embryos (N = 13), from three independent
clutches. (E–G) Whole blood analysis of 6-week old C57/B6 wild-type
(N = 8) and GPR182 KO (N = 7) mice.
(H) Bright-field images of 6-weeks old wild-type and GPR182 KD mouse
spleens. (I) Number of wild-type (N = 3) and GPR182
KD (N = 5) mouse spleen sizes. (J) Bright-field images
of P0 wild-type and GPR182 KD mouse spleens. (K) Quantification of
P0 wild-type (N = 7) and GPR182 KD (N = 11) mouse spleens. Spleen size was normalized by body weight and
P0 wild-type spleen size was set at 1. Data are mean ± s.d. and
a two-tailed Student’s t test was used to
calculate p-values. (L) Bright-field images of 6-months old adult
wild-type and gpr182 zebrafish spleen (see Figure S1D). Scale bars, 50 μm (A, C), 1 mm (D). BASO, basophils; CHT,
caudal hematopoietic tissue; CV, caudal vein; DA, dorsal aorta; EO,
Eosinophils; KD, knockdown; KO, knockout; MONO, monocytes; PCV, posterior
cardinal vein; RBCs, red blood cells.
Zebrafish and mousegpr182 mutants exhibit an
increased number of myeloid cells. (A) Confocal images of 60 hpf Tg(mpeg1:mCherry) wild-type and gpr182 embryos in the tail. White
arrows point to mpeg1:mCherry positive cells. (B)
Number of mpeg1:mCherry positive cells in tail (six
somites). Wild-type (N = 7), gpr182(N =
9), from three independent clutches. (C) Confocal images of 72 hpf Tg(lyz:EGFP); Tg(kdrl:Hsa.HRASmCherry) wild-type
and gpr182 larvae in the tail. White arrows point to lyz:EGFP positive cells. (D) Number of lyz:EGFP positive
cells in the tail (six somites). Wild-type embryos (N = 13), gpr182 embryos (N = 13), from three independent
clutches. (E–G) Whole blood analysis of 6-week old C57/B6 wild-type
(N = 8) and GPR182KO (N = 7) mice.
(H) Bright-field images of 6-weeks old wild-type and GPR182 KD mouse
spleens. (I) Number of wild-type (N = 3) and GPR182
KD (N = 5) mouse spleen sizes. (J) Bright-field images
of P0 wild-type and GPR182 KD mouse spleens. (K) Quantification of
P0 wild-type (N = 7) and GPR182 KD (N = 11) mouse spleens. Spleen size was normalized by body weight and
P0 wild-type spleen size was set at 1. Data are mean ± s.d. and
a two-tailed Student’s t test was used to
calculate p-values. (L) Bright-field images of 6-months old adult
wild-type and gpr182zebrafish spleen (see Figure S1D). Scale bars, 50 μm (A, C), 1 mm (D). BASO, basophils; CHT,
caudal hematopoietic tissue; CV, caudal vein; DA, dorsal aorta; EO,
Eosinophils; KD, knockdown; KO, knockout; MONO, monocytes; PCV, posterior
cardinal vein; RBCs, red blood cells.
GPR182 Regulation of Hematopoiesis Is Also Observed in Mice
Next, we wanted to investigate whether the physiological role of
Gpr182 in hematopoiesis is conserved in higher vertebrates. To this
end, we first used a previously described genetically engineered mouse
model that has a complete loss of GPR182 function (GPR182KO).[24] On the basis of our zebrafishgpr182 data
(Figure B–E,
5A–D), we hypothesized that GPR182 regulates myeloid cell differentiation,
and predicted that the proportion of myeloid cells in the whole blood
of wild-type mice would be significantly different than that in GPR182KOmice. As predicted, we found an increase in myeloid
cells, especially neutrophils, in GPR182KO adult
mice compared to wild-type (WT, 18.57%; N = 8; GPR182KO, 32.52%; N = 7). Conversely,
we found a decrease in lymphocytes in GRP182 KOmice compared to wild-type
(WT, 76.98%; N = 8; GPR182KO, 61.1%; N = 7) (Figure E). While we also observed subtle changes in the number of
monocytes, basophils, and RBCs in GPR182KOmice
compared to wild-type, these differences were not significant (Figure F, G, Table S4). Taken together, these data support
a role for GPR182 in the differentiation of myeloid cells in adult
mice. Furthermore, these data indicate that the physiological role
of Gpr182 in definitive hematopoiesis is conserved between zebrafish
and mice.Previously, Kelchele et al. reported that GPR182KO adult mice exhibit an enlarged spleen.[24] Thus, considering the role of GPR182 in hematopoiesis
and the fact that the spleen is a major hematopoietic organ, we examined
the spleen from GPR182 knockdown (KD) mice, which
have an 85% reduction in Gpr182 mRNA, as well as
from gpr182 mutant zebrafish. As Kelchele et al.
observed, we found that adult and P0 GPR182 KD mice
exhibit an increase in spleen size compared to wild-type (adult spleen:
1.6 fold; wild-type. N = 3; KD, N = 5. P0 pup spleen: 1.93 fold; wild-type, N = 7;
KD, N = 11) (Figure H–K). Consistent with these observations in
mice, 6-months old gpr182 adult zebrafish also exhibit an increase in spleen size compared
to wild-type (Figure L and Figure S1D). These data further
support the conclusion that the physiological role of GPR182 in hematopoiesis
is conserved between zebrafish and mice.
GPR182 Regulates Hematopoiesis
via Induction of the Leukotriene
Biosynthesis Pathway
After finding a physiological role for
GPR182 in definitive hematopoiesis, we next sought to define the molecular
mechanism for the GPR182 function. Considering that GPR182 is an orphan
receptor, we sought to modulate GPR182 activity by treating a stable
cell line expressing a tagged version of humanGPR182 (TANGO system)
with a small molecule library (Figure A, Figure S2A,B).[25] Of the 820 bioactive lipid compounds screened
in duplicate (trial 1 and 2), we selected 11 potential hits that activated
the hGPR182-TANGO system (Figure B, Figure S2C). These 11
hits were rescreened using the TANGO assay, from which, two compounds,
MS-275 (HDAC inhibitor) and ibuprofen (cyclooxygenase inhibitor),
were found to consistently activate the hGPR182-TANGO system (Figure B, Figure S2D).
Figure 6
Activation of the leukotriene biosynthesis pathway by
GPR182. (A)
Schematic illustration of the human GPR182-TANGO (hGPR182-TANGO) system
and associated small molecule screening. (B) Differential hGPR182-TANGO
activation by small molecules tested during the primary screen. A
total of 820 compounds from bioactive lipid small-molecule libraries
were screened in duplicate. Dashed lines indicate the 2-fold (log2) ratio. Negative control (1% DMSO). (C) Venn diagram showing
genes highly expressed in HE (red circle) and gpr182 ECs (green circle).
(D) Pathway analysis of selected genes from panel C. (E) Heat-map
analysis of leukotriene biosynthesis pathways in wild-type and gpr182 embryos
at 30 and 48 hpf. (F) Schematic illustration of prostaglandin and
leukotriene biosynthesis pathways. Pathways blocked by ibuprofen marked
in blue; pathways upregulated in gpr182 ECs marked in red. (G) β-arrestin-1
recruitment assay. Best fit calculated by a nonlinear regression with
four parameters and variable slope, ± S.E.M., N = 3 biological replicates. Curves and statistical significance were
determined by nonlinear regression with a comparison of fits (F-test).
Activation of the leukotriene biosynthesis pathway by
GPR182. (A)
Schematic illustration of the humanGPR182-TANGO (hGPR182-TANGO) system
and associated small molecule screening. (B) Differential hGPR182-TANGO
activation by small molecules tested during the primary screen. A
total of 820 compounds from bioactive lipid small-molecule libraries
were screened in duplicate. Dashed lines indicate the 2-fold (log2) ratio. Negative control (1% DMSO). (C) Venn diagram showing
genes highly expressed in HE (red circle) and gpr182 ECs (green circle).
(D) Pathway analysis of selected genes from panel C. (E) Heat-map
analysis of leukotriene biosynthesis pathways in wild-type and gpr182 embryos
at 30 and 48 hpf. (F) Schematic illustration of prostaglandin and
leukotriene biosynthesis pathways. Pathways blocked by ibuprofen marked
in blue; pathways upregulated in gpr182 ECs marked in red. (G) β-arrestin-1
recruitment assay. Best fit calculated by a nonlinear regression with
four parameters and variable slope, ± S.E.M., N = 3 biological replicates. Curves and statistical significance were
determined by nonlinear regression with a comparison of fits (F-test).Since ibuprofen is known to inhibit cyclooxygenase
(COX), we wanted
to investigate how ibuprofen activates hGPR182. To address this question,
we treated our hGPR182-TANGO stable cell line with a broad COX inhibitor,
indomethacin, which resulted in the induction of reporter signal (>7
fold) compared to DMSO-treated control cells (Figure S2E,F). These data show that blocking COX activity
with indomethacin leads to the activation of the hGPR182-TANGO reporter.To understand why COX inhibition resulted in hGPR182-TANGO activation,
we returned to our zebrafishgpr182 model. Specifically, we examined signaling pathways that were
upregulated in gpr182 ECs compared to wild-type ECs. We hypothesized that the signaling
pathways upregulated in gpr182 ECs were upregulated to compensate for the loss of GPR182
function. To narrow down the list of candidates, we first selected
highly enriched genes (319 genes, >6 fold) in HEs compared to ECs
and selected 60 overlapping genes among those (468 genes, >2 fold)
that were also found to be increased in gpr182 ECs (Figure C).[18] Next, using
DAVID pathway analysis,[22,26] we identified the upregulation
of the leukotriene biosynthesis pathway in zebrafishgpr182 ECs (Figure D, E, Figure S3A, B).Consistent with a conserved role between zebrafish
and mice, we
found an increase in Lta4h mRNA in the bone marrow
and spleen isolated from GPR182 KD mice compared
to wild-type (data not shown). Interestingly, both the cyclooxygenase
and leukotriene biosynthesis (lipoxygenase) pathways are downstream
of arachidonic acid metabolism and are inextricably tied to the inflammatory
response (Figure F).[27] These results link GPR182 cellular functions
to arachidonic acid metabolism whereby COX inhibition promotes GPR182-TANGO
activation, and loss of GPR182 function promotes upregulation of leukotriene
biosynthesis (Figure F, Figure S2D, E). In addition, LTB4 treatment
of HEK293T cells overexpressing GPR182 resulted in β-arrestin-1
recruitment at high concentrations (>1 μM), suggesting that
LTB4 activates GPR182 signaling via a yet to be identified autocrine
and/or paracrine mechanism (Figure G). Taken together, these data suggest that GPR182
regulates hematopoiesis and the inflammatory response through modulation
of leukotriene biosynthesis. Future work will investigate the molecular
mechanisms that govern GPR182 regulation of the leukotriene biosynthesis
pathway.
Discussion
Previous reports have
shown that GPR182 is expressed
in endothelial cells in mice and humans. In this study, we validate
these results and also find gpr182 expression to
be enriched in the HE during zebrafish development (Figure B, E, T, U). Since the physiological
role of GPR182 during development was unknown, we isolated gpr182 ECs
using the Tg(kdrl:HsaHRAS-mCherry) EC reporter line
at 30 hpf and performed transcriptomic analysis (Figure A). We found that the expression
of genes related to definitive hematopoiesis and myelopoiesis were
increased in gpr182 ECs compared to wild-type (Figure B–D). Further, due to an observed
increase in myeloid marker gene expression in ECs, we hypothesized
that the loss of GPR182 function increases the potential for myeloid
cells to differentiate from HE/HSCs. Consistent with this hypothesis,
we observed an increase in myeloid marker gene expression in zebrafishgpr182 embryos
at 48 hpf (Figure D, E). These data suggest that GPR182 regulates myeloid differentiation
in an HE/HSC dependent manner.Importantly, we show that the
role of GPR182 in hematopoiesis is
conserved between zebrafish and mice. Specifically, whole blood isolated
from GPR182KOmice exhibited an increase in neutrophils and a decrease in lymphocytes
compared to wild-type (Figure E). These data support a model suggesting that GPR182 promotes
HSC differentiation into myeloid rather than lymphoid cells. It was
recently reported that sinusoidal endothelial cells are important
for HSC differentiation during regeneration in vivo(28) as well as HSC expansion in
vitro.[29] Interestingly, GPR182
is known to be specifically expressed in sinusoidal endothelial cells
in the spleen, lymph node, and the bone marrow in humans.[30] These data indicate that GPR182 expressed in
sinusoidal endothelial cells of the bone marrow regulates HSC differentiation,
and it will be interesting to investigate further the underlying mechanisms.In this study, we also establish a novel link between GPR182 and
inflammation. Specifically, we found that loss of GPR182 in zebrafish
ECs and mouse bone marrow resulted in the increased expression of
inflammatory signals (Figures B and 6E, data not shown). Inflammatory
signals, such as TNF-α and interferons, are essential for hematopoiesis
in the adult bone marrow and in zebrafish embryos.[31−35] However, it is unknown how HE/HSCs recognize inflammatory
signals to maintain homeostasis. To this end, we identified a novel
link between GPR182 and the leukotriene biosynthesis pathway (Figure ). Leukotriene B4
(LTB4) is a lipid metabolite produced by the leukotriene biosynthesis
pathway that mediates inflammatory signals in response to bacterial
infection and/or inflammatory conditions.[36,37] Importantly, LTB4 has been previously linked to the regulation of
hematopoiesis;[38] however, the underlying
molecular mechanisms are unknown. Here, we provide evidence for a
novel link between GPR182 expressed in HE/HSCs and LTB4 synthesis.
Considering this link between GPR182, hematopoiesis, and inflammation,
future studies might investigate the molecular mechanisms by which
GPR182 signaling regulates leukotriene biosynthesis as well as the
role GPR182 plays in acute versus chronic models of inflammation.In summary, we have generated a zebrafishgpr182 mutant and characterized the role of Gpr182 in HE/HSC formation
as well as in myeloid cell differentiation. Importantly, we confirmed
that the physiological function of GPR182 in hematopoiesis is conserved
between zebrafish and mice. This observation underscores the importance
of GPR182 in HSC formation and hematopoiesis. Further, we show that
GPR182 functions as a negative regulator of definitive hematopoiesis
to maintain inflammatory homeostasis via regulation of leukotriene
biosynthesis. Identification of a role for GPR182 in definitive hematopoiesis
and inflammation highlights it as a putative therapeutic target for
the treatment of blood related pathologies including leukemia.
Material
and Methods
Study Approval
All zebrafish (Danio rerio) husbandry
was performed under standard conditions in accordance with institutional
(Max Planck Gesellschaft) and national ethical and animal welfare
guidelines approved by the ethics committee for animal experiments
at the Regierungspräsidium Darmstadt, Germany. In addition,
all animal experiments performed at the University of North Carolina
at Chapel Hill were approved by the UNC Institutional Animal Care
and Use Committee. Animals were housed in an AAALAC-accredited facility
in compliance with the Guide for the Care and Use of Laboratory
Animals guide as detailed on protocols.io (dx.doi.org/10.17504/protocols.io.baenibde).
Zebrafish
AB, Tg(fli1a:EGFP) (ref (16)), TgBAC(etsrp:EGFP) (ref (39)), Tg(kdrl:Hsa.HRASmCherry) (ref (40)), Tg(cd41:EGFP) (ref (41)), Tg(cmyb:GFP) (ref (42)), Tg(mpeg:mCherry) (ref (43)), Tg(mpeg:EGFP) (ref (44)),
and Tg(lyz:EGFP) (ref (44)) fish were
used in this study. Embryos were staged by hpf at 28.5 °C.[45]
Mouse
The Gpr182tm2a(KOMP)Wtsi/+ (knockout
first/promoter driven) mice used in this study were created from an
embryonic stem (ES) cell clone (EPD0365_4_C08) obtained from the National
Center for Research Resources-NIH-supported Knockout Mouse Project
(KOMP) repository and generated by the CHORI, Sanger Institute, and
UC Davis (CSD) Consortium for the NIH-funded KOMP.[46] The CSD-targeted allele has been previously published.[51,52] To generate GPR182 knockout (KO) mice, Gpr182tm2a(KOMP)Wtsi/+ mice were crossed with the B6.C-Tg(CMV-cre)1Cgn/J Tg mouse line expressing Cre recombinase
ubiquitously (The Jackson Laboratory; stock no. 006054). To generate GPR182 knockdown (KD) mice, heterozygous Gpr182lacZ/+ mice were incrossed. Homozygous Gpr182 lacZ/lacZ mice showed the
reduction of Gpr182 mRNA level compared to wild-type,
as described in a previous publication.[24] Thus, we used homozygous Gpr182LacZ/LacZ mice as GPR182 KD mice. All Gpr182-associated mouse
lines were maintained on an isogenic C57BL/6 background. The genotyping
primers used are listed in Table S1.
Generation of Zebrafish gpr182 Mutants
The gpr182 mutant line (gpr182) was generated using the CRISPR-Cas9
system as previously described.[19,20] pT7-gRNA and pT3TS-nlsCas9nls
vectors were purchased from Addgene. A gRNA was designed to target
the gpr182 exon using the CRISPR design tool (http://crispr.mit.edu/). Cas9
mRNA (100 pg) and a gRNA targeting the gene of interest (50 pg) were
coinjected into zebrafish embryos at the one-cell stage. Mutant alleles
were identified by high-resolution melt analysis (HRMA) of PCR products,
allowing one to distinguish between heterozygous, WT, and homozygous
mutants.
RNA Sequencing
RNA was isolated from sorted endothelial
cells of 30 hpf wild-type sibling and gpr182Tg(kdrl:Hsa.HRASmCherry) embryos as well as from 30 and 48 hpf wild-type and gpr182 embryos using the miRNeasy
Micro Kit (Qiagen). To avoid contamination with genomic DNA, the samples
were treated by on-column DNase digestion (DNase-Free DNase Set, Qiagen).
RNA and library preparation integrity were verified with LabChip Gx
Touch 24 (PerkinElmer). The RNA amount was adjusted on the number
of isolated cells by FACS and approximately 4 ng of total RNA was
used as input for SMARTer Stranded Total RNA-Seq Kit-Pico Input Mammalian
(Takara Clontech). Sequencing was performed on the NextSeq500 instrument
(Illumina) using v2 chemistry, resulting in an average of 27 M reads
per library with 1 × 75 bp single end setup. The resulting raw
reads were assessed for quality, adapter content, and duplication
rates with FastQC.[47] Reaper version 13–100
was employed to trim reads after a quality drop below a mean of Q20
in a window of 10 nucleotides.[48] Only reads
between 30 and 150 nucleotides were cleared for further analyses.
Trimmed and filtered reads were aligned versus the Ensembl Zebrafish
genome version DanRer10 (GRCz10.87) using STAR 2.4.0a with the parameter
“-out Filter Mismatch Nover Lmax 0.1” to increase the
maximum ratio of mismatches to mapped length to 10%.[49] The number of reads aligning to genes was counted with
the feature Counts 1.4.5-p1 tool from the Subread package.[50] Only reads mapping at least partially inside
exons were admitted and aggregated per gene. Reads overlapping multiple
genes or aligning to multiple regions were excluded. The Ensemble
annotation was enriched with UniProt data (release 06.06.2014) based
on Ensemble gene identifiers.[51]
RNA-Seq
Analysis
RNA-seq data were downloaded from
the published paper. RSEM upper-quantile-normalized
values from Illumina HiSeq_RNASeqV2 from 28 hpf gpr182 and wild-type tissue
were log2 transformed. Samples with an expression value of 3 or lower
were indistinguishable from background values and were thus considered
a value of 0. The Bioconductor package edgeR version 3.26.8 was used
to compute RPKM.[52] Differentially expressed
genes between two groups were determined using the R-package DEseq2
and edgeR with a criterion P-value cutoff of 0.05
and fold change cutoff of 2.[53] Functional
and pathway enrichment analyses were performed using the Database
for Annotation Visualization and Integrated Discovery (DAVID; https://david.ncifcrf.gov/).[26] The heatmap was generated using the
R-package heatmap.2 function in the gplots package according to z-score of RPKMs (reads per kilobase per million reads)
of each gene in multiple samples.
Whole-Mount In
Situ Hybridization
For whole-mount in situ hybridization (WISH), zebrafish
embryos and larvae were fixed in 4% PFA overnight at 4 °C and
subsequently dehydrated in methanol and stored at −20 °C
until required. Before hybridization, embryos were rehydrated to PBS/0.1%
Tween and then digested in 10 mg/mL Proteinase K (Roche) followed
by fixation in 4% PFA in PBS/0.1% Tween. Embryos were washed in PBS/0.1%
Tween, preincubated in hybridization buffer at 70 °C for 4 h,
and then incubated with Dig-labeled RNA probes in hybridization buffer
at 70 °C overnight. After washing, the hybridized probes were
detected with alkaline-phosphatase conjugated, alkaline-phosphatase-labeled
antidigoxigenin antibody (11093274910, Roche, dilution 1:1,000) at
4 °C overnight, and the signal was visualized with BM purple
(1144207001, Roche). Probes for gpr182 and cmyb were amplified from cDNA synthesized from total RNA
extracted from 24 to 48 hpf zebrafish embryos. Primer information
is in Table S1.
In Vivo Imaging and Image Processing
Pigmentation of embryos and
larvae was inhibited by 1-phenyl-2-thiourea
(Sigma). The embryos were treated with 100 mg/mL tricaine (Sigma),
mounted in a drop of 1.0–1.5% low melting agarose in egg water
and placed onto a glass-bottom Petri dish (MatTek Corporation, Ashland,
Ma). Fluorescence images were obtained using an LSM800 confocal laser
scanning microscope (Zeiss), an Olympus Fluoview FV1000 confocal laser
scanning microscope (Olympus) or high-end stereoscopic microscopes
(Nikon SMZ25). Three-dimensional-rendered z-stack
images and three-dimensional surface-rendered images and movies were
analyzed and assembled using the IMARIS software (BITPLANE).
Small
Molecule Screening
To screen for agonists of
GPR182, we used the Tango assay as previously described,[24] and the Cayman Bioactive Lipid I Screening Library
(reference 10506). Stable HTLA cells expressing hGPR182-TANGO HTLA
were seeded on gelatin-coated 96-well plates at 50 000 cells
per well in complete DMEM medium containing FBS. After 1 day, the
medium was replaced with 100 μL of serum-free DMEM medium containing
antibiotics for 4 h. Compounds to be tested, including DMSO controls,
were then added directly to the wells at a final concentration of
10 μM, and the cells were further incubated for 16 h at 37 °C–5%
CO2. After stimulation, the supernatant was removed and
replaced by 100 μL of assay reagent per well (HBSS, Gibco 14025-092;
20 mM HEPES, Gibco 15630056; BrighGloReagentTM, Promega E2620; pH7.4
at room temperature). The plates were incubated in the dark for 20
min at room temperature on an orbital shaker at 400 rpm The emitted
luminescence was then measured using the Flexstation 3 device (Molecular
Probes).
Whole Blood Analysis
Whole blood samples were obtained
by incising the right submandibular vein of anesthetized mice with
a sterile 4 mm lancet. Anesthesia was induced by placing each mouse
in an inhalation chamber with 4% isoflurane (FORANE, Baxter Healthcare).
The volume of each blood sample was approximately 300 μL. For
collecting blood, we used the tubes containing EDTA to prevent clotting.
After, a complete blood count (CBC) test was performed at the Animal
Histopathology and Laboratory Medicine Core (University of North Carolina,
Chapel Hill). The results of the CBC test are summarized in Table S4.
β-Arrestin Recruitment
Assays
To assay for β-arrestin1
recruitment, HEK293T cells were seeded in 10 cm2 dish and
grown overnight. The following day, cells were transfected using calcium
phosphate precipitation with GPR182-rLuc (1 μg), β-arrestin-1-YFP
(5 μg), and GRK (4 μg). The next day, cells were seeded
into a 96-well plate. After 24 h, the media was removed and 80 μL
of PBS was added to each well. Then, 10 μL of Coelenterazine
h was added to each well and incubated for 10 min in the dark. Finally,
titrated concentrations of LTB4 were added to the plate, and the luminescence
and fluorescence were read after 30 min. Data were analyzed with a
nonlinear curve fit with a variable slope for either log(agonist)
or log(antagonist).
Statistics
Statistical analysis
was performed using
GraphPad Prism 8.2.1 (GraphPad Software), and all data are represented
as the mean ± SEM. Statistical significance for paired samples
and for multiple comparisons was determined by Student’s t test and one-way analysis of variance with Tukey’s
test, respectively. A P-value of less than 0.05 was
considered statistically significant.
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Authors: Andrea T Hooper; Jason M Butler; Daniel J Nolan; Andrea Kranz; Kaoruko Iida; Mariko Kobayashi; Hans-Georg Kopp; Koji Shido; Isabelle Petit; Kilangsungla Yanger; Daylon James; Larry Witte; Zhenping Zhu; Yan Wu; Bronislaw Pytowski; Zev Rosenwaks; Vivek Mittal; Thomas N Sato; Shahin Rafii Journal: Cell Stem Cell Date: 2009-03-06 Impact factor: 24.633
Authors: Alan Le Mercier; Remy Bonnavion; Weijia Yu; Mohamad Wessam Alnouri; Sophie Ramas; Yang Zhang; Yannick Jäger; Kenneth Anthony Roquid; Hyun-Woo Jeong; Kishor Kumar Sivaraj; Haaglim Cho; Xinyi Chen; Boris Strilic; Tjeerd Sijmonsma; Ralf Adams; Timm Schroeder; Michael A Rieger; Stefan Offermanns Journal: Proc Natl Acad Sci U S A Date: 2021-04-27 Impact factor: 11.205