| Literature DB >> 32832038 |
Abstract
ACE2 plays a critical role in SARS-CoV-2 infection to cause COVID-19 and SARS-CoV-2 spike protein binds to ACE2 and probably functionally inhibits ACE2 to aggravate the underlying diseases of COVID-19. The important factors that affect the severity and fatality of COVID-19 include patients' underlying diseases and ages. Therefore, particular care to the patients with underlying diseases is needed during the treatment of COVID-19 patients.Entities:
Keywords: ACE2, Angiotensin converting enzyme 2; ACEI, ACE inhibitor; Angiotensin converting enzyme 2; COVID-19, Coronavirus Infectious Disease-19; CVD, cardiovascular disease; Coronavirus Infectious Disease-19; Health disparity; PAH, pulmonary artery hypertension; R0, Reproductive number; RAS, Renin-angiotensin system; RBD, Receptor binding domain; S, Spike: TMPRSS2, Transmembrane protease, serine 2; SARS-CoV-2, Severe Acute Respiratory Syndrome Coronavirus −2 SARS-CoV-2, Middle East Respiratory Syndrome 2: MERS-2; SNP, Single Nucleotide Polymorphism; Severe Acute Respiratory Syndrome Coronavirus −2; Single Nucleotide Polymorphism; Underlying diseases
Year: 2020 PMID: 32832038 PMCID: PMC7409731 DOI: 10.1016/j.csbj.2020.08.002
Source DB: PubMed Journal: Comput Struct Biotechnol J ISSN: 2001-0370 Impact factor: 7.271
The Receptors for the Human Pathogenic Coronaviruses.
| Subfamily | Name | Receptor |
|---|---|---|
| alpha-coronavirus | HCoV-229E | aminopeptidase N (APN) |
| alpha-coronavirus | HCoV-OC43 | N-Acetylneuraminic acid (Neu5Ac or NANA) |
| beta-coronavirus | SARS-CoV-1) | angiotensin converting enzyme 2 (ACE2) |
| beta-coronavirus | HCoV-NL63 | angiotensin converting enzyme 2 (ACE2) |
| beta-coronavirus | CoV-HKU1 | dipeptidyl peptidase 4 (DPP4) |
| beta-coronavirus | MERS-CoV | dipeptidyl peptidase 4 (DPP4) |
| beta-coronavirus | SARS-CoV-2 | angiotensin converting enzyme 2 (ACE2) |
Fig. 1Two theories to explain the severity of COVID-19: 1. ACE2 enhancing viral infection, and 2. Viral aggravating existing diseases. ACE catalyzes the conversion of angiotensin I to angiotensin II, a vasoconstrictor. Angiotensin II is converted by ACE2 to Angiotensin-(1–7), a vasodilator. Theory 1 suggests that using ACEI/ARB increases ACE2, which further enhances viral infection. Theory 2 suggests that ACE2 can be either exhausted or functionally inhibited by S1 so that more angiotensin II and less Angiotensin-(1–7) are produced, which would aggravate underlying diseases.
Fig. 2The structure of human ACE2 with SARS-Cov-2 Spike RBD: Human receptor ACE2 (green), SARS-CoV-2 spike receptor-binding domain (RBD, yellow orange) and receptor-binding motif (RBM: brown) were shown as cartoons. ACE2 contacted residues, including S19 (purple), T27 (red), E35 and E27 (magenta), M82 (orange) and D355 (hot pink), were displayed as sticks. The image was generated using PyMOL () based on PDB ID: 6LZG. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
Effects of human single nucleotide variants located in contact residues at the SARS-CoV-2 RBD/ACE2 interface.
| dbSNP | Mutation | Binding Affinity Prediction | Mutation Pathogenicity Prediction | Allele Count in Different Populations | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Distance-to-interface | Change | Affinity | SIFT | Polyphen2 | REVEL | CADD | African | Latino | East Asian | European (Finnish) | European (non-Finnish) | ||
| rs73635825 | S19P | 2.83 | 0.086 | Increasing | Tolerated | Probably Damaging | 0.166 | 1.862 | 63 | 0 | 0 | 0 | 0 |
| rs781255386 | T27A | 3.498 | 1.004 | Increasing | Tolerated | Benign | 0.021 | 0.787 | 0 | 2 | 0 | 0 | 0 |
| rs1348114695 | E35K | 2.693 | −0.668 | Decreasing | Tolerated | Benign | 0.022 | 0.303 | 0 | 0 | 2 | 0 | 1 |
| rs146676783 | E37K | 3.314 | −1.226 | Decreasing | Tolerated | Probably Damaging | 0.163 | 2.669 | 2 | 0 | 0 | 6 | 0 |
| rs766996587 | M82I | 3.382 | −0.521 | Decreasing | Tolerated | Benign | 0.016 | −0.646 | 5 | 0 | 0 | 0 | 0 |
| rs961360700 | D355N | 3.547 | −0.901 | Decreasing | Deleterious | Probably Damaging | 0.430 | 3.005 | 0 | 0 | 0 | 0 | 2 |
The effects of variants on binding affinity were predicted using mcsm-ppi2 (). Mutation pathogenicity predictions were extracted from dbNSFP (). Allele counts in different populations were downloaded from gnomAD ().