Literature DB >> 32829251

Imaging mRNA trafficking in living cells using fluorogenic proteins.

Jiahui Wu1, Samie R Jaffrey2.   

Abstract

mRNAs play key roles in regulating diverse cellular functions. In many cases, mRNAs exhibit distinct intracellular localizations that are necessary for the spatiotemporal control of protein expression in cells. Therefore, imaging the localization and dynamics of these mRNAs is crucial for understanding diverse aspects of cellular function. In this review, we summarize how mRNA imaging can be achieved using tethered fluorescent proteins and fluorogenic aptamers. We discuss 'fluorogenic proteins' and describe how these recently developed RNA-regulated fluorescent proteins simplify mRNA imaging experiments.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Aptamers; Fluorescent proteins; Fluorogenic proteins; Imaging; RNA

Mesh:

Substances:

Year:  2020        PMID: 32829251      PMCID: PMC7484318          DOI: 10.1016/j.cbpa.2020.07.007

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  38 in total

1.  Laser-mediated, site-specific inactivation of RNA transcripts.

Authors:  D Grate; C Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

2.  Real-time observation of transcription initiation and elongation on an endogenous yeast gene.

Authors:  Daniel R Larson; Daniel Zenklusen; Bin Wu; Jeffrey A Chao; Robert H Singer
Journal:  Science       Date:  2011-04-22       Impact factor: 47.728

3.  Aptamers switch on fluorescence of triphenylmethane dyes.

Authors:  Jeremy R Babendure; Stephen R Adams; Roger Y Tsien
Journal:  J Am Chem Soc       Date:  2003-12-03       Impact factor: 15.419

4.  The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells.

Authors:  Ivana Horvathova; Franka Voigt; Anna V Kotrys; Yinxiu Zhan; Caroline G Artus-Revel; Jan Eglinger; Michael B Stadler; Luca Giorgetti; Jeffrey A Chao
Journal:  Mol Cell       Date:  2017-10-19       Impact factor: 17.970

5.  RNA mimics of green fluorescent protein.

Authors:  Jeremy S Paige; Karen Y Wu; Samie R Jaffrey
Journal:  Science       Date:  2011-07-29       Impact factor: 47.728

6.  SiRA: A Silicon Rhodamine-Binding Aptamer for Live-Cell Super-Resolution RNA Imaging.

Authors:  Regina Wirth; Peng Gao; G Ulrich Nienhaus; Murat Sunbul; Andres Jäschke
Journal:  J Am Chem Soc       Date:  2019-04-23       Impact factor: 15.419

7.  Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging.

Authors:  Kyu Young Han; Benjamin J Leslie; Jingyi Fei; Jichuan Zhang; Taekjip Ha
Journal:  J Am Chem Soc       Date:  2013-12-10       Impact factor: 15.419

8.  Imaging RNA polymerase III transcription using a photostable RNA-fluorophore complex.

Authors:  Wenjiao Song; Grigory S Filonov; Hyaeyeong Kim; Markus Hirsch; Xing Li; Jared D Moon; Samie R Jaffrey
Journal:  Nat Chem Biol       Date:  2017-09-25       Impact factor: 15.040

9.  A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells.

Authors:  Esther Braselmann; Aleksandra J Wierzba; Jacob T Polaski; Mikołaj Chromiński; Zachariah E Holmes; Sheng-Ting Hung; Dilara Batan; Joshua R Wheeler; Roy Parker; Ralph Jimenez; Dorota Gryko; Robert T Batey; Amy E Palmer
Journal:  Nat Chem Biol       Date:  2018-07-30       Impact factor: 15.040

10.  Live cell imaging reveals 3'-UTR dependent mRNA sorting to synapses.

Authors:  Karl E Bauer; Inmaculada Segura; Imre Gaspar; Volker Scheuss; Christin Illig; Georg Ammer; Saskia Hutten; Eugénia Basyuk; Sandra M Fernández-Moya; Janina Ehses; Edouard Bertrand; Michael A Kiebler
Journal:  Nat Commun       Date:  2019-07-18       Impact factor: 14.919

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  5 in total

1.  Engineering Fluorophore Recycling in a Fluorogenic RNA Aptamer.

Authors:  Xing Li; Jiahui Wu; Samie R Jaffrey
Journal:  Angew Chem Int Ed Engl       Date:  2021-10-04       Impact factor: 15.336

Review 2.  Genetically encoded RNA nanodevices for cellular imaging and regulation.

Authors:  Qikun Yu; Kewei Ren; Mingxu You
Journal:  Nanoscale       Date:  2021-05-06       Impact factor: 7.790

Review 3.  Fluorescence Microscopy-An Outline of Hardware, Biological Handling, and Fluorophore Considerations.

Authors:  Shane M Hickey; Ben Ung; Christie Bader; Robert Brooks; Joanna Lazniewska; Ian R D Johnson; Alexandra Sorvina; Jessica Logan; Carmela Martini; Courtney R Moore; Litsa Karageorgos; Martin J Sweetman; Douglas A Brooks
Journal:  Cells       Date:  2021-12-23       Impact factor: 6.600

Review 4.  mRNA Trafficking in the Nervous System: A Key Mechanism of the Involvement of Activity-Regulated Cytoskeleton-Associated Protein (Arc) in Synaptic Plasticity.

Authors:  Michal Fila; Laura Diaz; Joanna Szczepanska; Elzbieta Pawlowska; Janusz Blasiak
Journal:  Neural Plast       Date:  2021-09-23       Impact factor: 3.599

Review 5.  Spatiotemporal Insights Into RNA-Organelle Interactions in Neurons.

Authors:  Shivani C Kharod; Dong-Woo Hwang; Sulagna Das; Young J Yoon
Journal:  Front Cell Dev Biol       Date:  2021-06-10
  5 in total

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