| Literature DB >> 32824240 |
Seung Hee Lee1,2, Jing Du2, John Hwa2, Won-Ho Kim1.
Abstract
Increased platelet activation and apoptosis are characteristic of diabetic (DM) platelets, where a Parkin-dependent mitophagy serves a major endogenous protective role. We now demonstrate that Parkin is highly expressed in both healthy platelets and diabetic platelets, compared to other mitochondria-enriched tissues such as the heart, muscle, brain, and liver. Abundance of Parkin in a small, short-lived anucleate cell suggest significance in various key processes. Through proteomics we identified 127 Parkin-interacting proteins in DM platelets and compared them to healthy controls. We assessed the 11 highest covered proteins by individual IPs and confirmed seven proteins that interacted with Parkin; VCP/p97, LAMP1, HADHA, FREMT3, PDIA, ILK, and 14-3-3. Upon further STRING analysis using GO and KEGG, interactions were divided into two broad groups: targeting platelet activation through (1) actions on mitochondria and (2) actions on integrin signaling. Parkin plays an important role in mitochondrial protection through mitophagy (VCP/p97), recruiting phagophores, and targeting lysosomes (with LAMP1). Mitochondrial β-oxidation may also be regulated by the Parkin/HADHA interaction. Parkin may regulate platelet aggregation and activation through integrin signaling through interactions with proteins like FREMT3, PDIA, ILK, and 14-3-3. Thus, platelet Parkin may regulate the protection (mitophagy) and stress response (platelet activation) in DM platelets. This study identified new potential therapeutic targets for platelet mitochondrial dysfunction and hyperactivation in diabetes mellitus.Entities:
Keywords: Parkin; diabetes; platelet
Mesh:
Substances:
Year: 2020 PMID: 32824240 PMCID: PMC7461561 DOI: 10.3390/ijms21165869
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Parkin was highly expressed in platelets. (A) Western blot analysis of Parkin expression in human platelets (platelets isolated from three healthy control and four diabetic patients) (left). Quantification of Parkin in HC and DM (right) (B) Platelets, heart, muscle, liver, and brain tissues isolated from non-DM and DM mice (platelets isolated from three non-DM and five DM mice). Western blot analysis of Parkin in each sample with lanes representing individual mice. (C) Parkin and LC3 immuno-EM analysis of DM platelets where 5 nm dots indicate immunogold-labeled Parkin clusters, and 10 nm dots indicate immunogold-labeled LC3 clusters. Representative areas of clusters of gold labeling in DM patients (A–C) are presented. Blue arrows indicate mitochondrial and granular Parkin. Red arrows indicate parkin in other regions.
Figure 2Identification of Parkin-interacting proteins in human DM platelets. (A) Immunoprecipitation of Parkin-interacting proteins in human DM platelets visualized by silver staining. We isolated 10 enriched bands from DM and compared it with HC for LC-MS/MS analysis. (B) Potential interacting proteins were analyzed by LC-MS/MS and using Mascot analysis.
Identification of Parkin-interacting proteins in DM platelets (above 40% coverage).
| Protein ID | Protein Name | MW (Da) | % Coverage |
|---|---|---|---|
| FIBG_HUMAN | Fibrinogen gamma chain OS = Homo sapiens GN = FGG PE = 1 SV = 3 | 51,479 | 78.8 |
| TERA_HUMAN | Transitional endoplasmic reticulum ATPase OS = Homo sapiens GN = VCP PE = 1 SV = 4 | 89,266 | 78.5 |
| FIBB_HUMAN | Fibrinogen beta chain OS = Homo sapiens GN = FGB PE = 1 SV = 2 | 55,892 | 75.4 |
| 1433Z_HUMAN | 14-3-3 protein zeta/delta OS = Homo sapiens GN = YWHAZ PE = 1 SV = 1 | 27,728 | 74.7 |
| ARPC5_HUMAN | Actin-Related protein 2/3 complex subunit 5 OS = Homo sapiens GN = ARPC5 PE = 1 SV = 3 | 16,310 | 72.2 |
| 1433F_HUMAN | 14-3-3 protein eta OS = Homo sapiens GN=YWHAH PE = 1 SV = 4 | 28,201 | 69.1 |
| DYL1_HUMAN | Dynein light chain 1, cytoplasmic OS = Homo sapiens GN = DYNLL1 PE = 1 SV = 1 | 10,359 | 64 |
| 1433B_HUMAN | 14-3-3 protein beta/alpha OS = Homo sapiens GN = YWHAB PE = 1 SV = 3 | 28,065 | 63 |
| GSTO1_HUMAN | Glutathione S-transferase omega-1 OS=Homo sapiens GN = GSTO1 PE = 1 SV = 2 | 27,548 | 61.4 |
| TPM4_HUMAN | Tropomyosin alpha-4 chain OS=Homo sapiens GN = TPM4 PE = 1 SV = 3 | 28,504 | 60.1 |
| 1433E_HUMAN | 14-3-3 protein epsilon OS = Homo sapiens GN = YWHAE PE = 1 SV = 1 | 29,155 | 59.2 |
| TSP1_HUMAN | Thrombospondin-1 OS = Homo sapiens GN = THBS1 PE = 1 SV = 2 | 129,300 | 58.1 |
| FIBA_HUMAN | Fibrinogen alpha chain OS = Homo sapiens GN = FGA PE = 1 SV = 2 | 94,914 | 56.9 |
| URP2_HUMAN | Fermitin family homolog 3 OS = Homo sapiens GN = FERMT3 PE = 1 SV = 1 | 75,905 | 55.8 |
| PRDX6_HUMAN | Peroxiredoxin-6 OS = Homo sapiens GN = PRDX6 PE = 1 SV = 3 | 25,019 | 54 |
| CAP1_HUMAN | Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN = CAP1 PE = 1 SV = 5 | 51,869 | 53.5 |
| S10A8_HUMAN | Protein S100-A8 OS = Homo sapiens GN = S100A8 PE = 1 SV = 1 | 10,828 | 52.7 |
| 1433T_HUMAN | 14-3-3 protein theta OS = Homo sapiens GN = YWHAQ PE = 1 SV = 1 | 27,747 | 51.4 |
| F13A_HUMAN | Coagulation factor XIII A chain OS = Homo sapiens GN = F13A1 PE = 1 SV = 4 | 83,215 | 51.2 |
| PDIA5_HUMAN | Protein disulfide-isomerase A5 OS=Homo sapiens GN = PDIA5 PE = 1 SV = 1 | 59,556 | 50.5 |
| PHB_HUMAN | Prohibitin OS = Homo sapiens GN = PHB PE = 1 SV = 1 | 29,786 | 50.4 |
| ILK_HUMAN | Integrin-linked protein kinase OS = Homo sapiens GN =I LK PE = 1 SV = 2 | 51,386 | 49.1 |
| MMRN1_HUMAN | Multimerin-1 OS = Homo sapiens GN = MMRN1 PE = 1 SV = 3 | 138,023 | 48.4 |
| COF1_HUMAN | Cofilin-1 OS = Homo sapiens GN = CFL1 PE = 1 SV = 3 | 18,491 | 47 |
| 1433G_HUMAN | 14-3-3 protein gamma OS = Homo sapiens GN = YWHAG PE = 1 SV = 2 | 28,285 | 47 |
| LTOR1_HUMAN | Ragulator complex protein LAMTOR1 OS = Homo sapiens GN = LAMTOR1 PE = 1 SV = 2 | 17,734 | 45.3 |
| UB2V1_HUMAN | Ubiquitin-conjugating enzyme E2 variant 1 OS = Homo sapiens GN = UBE2V1 PE = 1 SV = 2 | 16,484 | 44.2 |
| CALR_HUMAN | Calreticulin OS = Homo sapiens GN = CALR PE = 1 SV = 1 | 48,112 | 43.9 |
| PLF4_HUMAN | Platelet factor 4 OS = Homo sapiens GN = PF4 PE = 1 SV = 2 | 10,838 | 43.6 |
| PDIA6_HUMAN | Protein disulfide-isomerase A6 OS = Homo sapiens GN = PDIA6 PE = 1 SV = 1 | 48,091 | 42 |
| ATP5I_HUMAN | ATP synthase subunit e, mitochondrial OS = Homo sapiens GN = ATP5I PE = 1 SV = 2 | 7928 | 40.6 |
| EMIL1_HUMAN | EMILIN-1 OS = Homo sapiens GN = EMILIN1 PE = 1 SV = 2 | 106,601 | 40.4 |
| NDUA2_HUMAN | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS = Homo sapiens GN = NDUFA2 PE = 1 SV = 3 | 10,915 | 40.4 |
Identification of Parkin-interacting proteins in DM platelets (39~20% coverage).
| Protein ID | Protein Name | MW (Da) | % Coverage |
|---|---|---|---|
| PDE5A_HUMAN | cGMP-specific 3′,5′-cyclic phosphodiesterase OS = Homo sapiens GN = PDE5A PE = 1 SV = 2 | 99,921 | 38.7 |
| CXCL7_HUMAN | Platelet basic protein OS = Homo sapiens GN = PPBP PE = 1 SV = 3 | 13,885 | 38.3 |
| ATP5L_HUMAN | ATP synthase subunit g, mitochondrial OS = Homo sapiens GN = ATP5L PE = 1 SV = 3 | 11,421 | 37.9 |
| S10A9_HUMAN | Protein S100-A9 OS = Homo sapiens GN = S100A9 PE = 1 SV = 1 | 13,234 | 37.7 |
| NDUA4_HUMAN | Cytochrome c oxidase subunit NDUFA4 OS = Homo sapiens GN = NDUFA4 PE = 1 SV = 1 | 9,364 | 37 |
| CALM_HUMAN | Calmodulin OS = Homo sapiens GN = CALM1 PE = 1 SV = 2 | 16,827 | 36.9 |
| S10A4_HUMAN | Protein S100-A4 OS = Homo sapiens GN = S100A4 PE = 1 SV = 1 | 11,721 | 36.6 |
| MIC60_HUMAN | MICOS complex subunit MIC60 OS = Homo sapiens GN = IMMT PE = 1 SV = 1 | 83,626 | 35.6 |
| FINC_HUMAN | Fibronectin OS = Homo sapiens GN = FN1 PE = 1 SV = 4 | 262,460 | 34.5 |
| NEXN_HUMAN | Nexilin OS = Homo sapiens GN = NEXN PE = 1 SV = 1 | 80,609 | 34.5 |
| ITB3_HUMAN | Integrin beta-3 OS = Homo sapiens GN = ITGB3 PE = 1 SV = 2 | 87,000 | 33.6 |
| PSA7_HUMAN | Proteasome subunit alpha type-7 OS = Homo sapiens GN = PSMA7 PE = 1 SV = 1 | 27,870 | 33.1 |
| SAMP_HUMAN | Serum amyloid P-component OS = Homo sapiens GN = APCS PE = 1 SV = 2 | 25,371 | 32.7 |
| SKAP2_HUMAN | Src kinase-associated phosphoprotein 2 OS = Homo sapiens GN = SKAP2 PE = 1 SV = 1 | 41,191 | 32.3 |
| NUBP2_HUMAN | Cytosolic Fe-S cluster assembly factor NUBP2 OS = Homo sapiens GN = NUBP2 PE = 1 SV = 1 | 28,807 | 31.4 |
| SSBP_HUMAN | Single-Stranded DNA-binding protein, mitochondrial OS = Homo sapiens GN = SSBP1 PE = 1 SV = 1 | 17,249 | 31.1 |
| GPIX_HUMAN | Platelet glycoprotein IX OS = Homo sapiens GN = GP9 PE = 1 SV = 3 | 19,034 | 30.5 |
| A4_HUMAN | Amyloid beta A4 protein OS = Homo sapiens GN = APP PE = 1 SV = 3 | 86,888 | 30 |
| PSME2_HUMAN | Proteasome activator complex subunit 2 OS = Homo sapiens GN = PSME2 PE = 1 SV = 4 | 27,384 | 29.3 |
| CXCL7_HUMAN | Platelet basic protein OS = Homo sapiens GN = PPBP PE = 1 SV = 3 | 13,885 | 27.3 |
| KAD2_HUMAN | Adenylate kinase 2, mitochondrial OS=Homo sapiens GN = AK2 PE = 1 SV = 2 | 26,461 | 27.2 |
| UB2L3_HUMAN | Ubiquitin-conjugating enzyme E2 L3 OS = Homo sapiens GN = UBE2L3 PE = 1 SV = 1 | 17,850 | 26.6 |
| KPYM_HUMAN | Pyruvate kinase PKM OS = Homo sapiens GN = PKM PE = 1 SV = 4 | 57,900 | 26.2 |
| DHB4_HUMAN | Peroxisomal multifunctional enzyme type 2 OS = Homo sapiens GN = HSD17B4 PE = 1 SV = 3 | 79,636 | 25.7 |
| NDUA7_HUMAN | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 7 OS =Homo sapiens GN = NDUFA7 PE =1 SV=3 | 12,544 | 25.7 |
| PSA3_HUMAN | Proteasome subunit alpha type-3 OS = Homo sapiens GN = PSMA3 PE = 1 SV = 2 | 28,415 | 24.7 |
| PRDX1_HUMAN | Peroxiredoxin-1 OS = Homo sapiens GN = PRDX1 PE = 1 SV = 1 | 22,096 | 23.6 |
| PLMN_HUMAN | Plasminogen OS = Homo sapiens GN = PLG PE = 1 SV = 2 | 90,510 | 23.5 |
| UBP5_HUMAN | Ubiquitin carboxyl-terminal hydrolase 5 OS = Homo sapiens GN = USP5 PE = 1 SV = 2 | 95,725 | 23.3 |
| HECD3_HUMAN | E3 ubiquitin-protein ligase HECTD3 OS = Homo sapiens GN = HECTD3 PE = 1 SV = 1 | 97,051 | 22.8 |
| CAN1_HUMAN | Calpain-1 catalytic subunit OS = Homo sapiens GN = CAPN1 PE = 1 SV = 1 | 81,838 | 22.5 |
| RGS18_HUMAN | Regulator of G-protein signaling 18 OS = Homo sapiens GN = RGS18 PE = 1 SV = 1 | 27,565 | 22.1 |
| PSME1_HUMAN | Proteasome activator complex subunit 1 OS = Homo sapiens GN = PSME1 PE = 1 SV = 1 | 28,705 | 22.1 |
| PDIA1_HUMAN | Protein disulfide-isomerase OS = Homo sapiens GN = P4HB PE = 1 SV = 3 | 57,081 | 22 |
| GPX1_HUMAN | Glutathione peroxidase 1 OS = Homo sapiens GN = GPX1 PE = 1 SV = 4 | 22,075 | 21.7 |
| PDIA3_HUMAN | Protein disulfide-isomerase A3 OS = Homo sapiens GN = PDIA3 PE = 1 SV = 4 | 56,747 | 21 |
| VWF_HUMAN | von Willebrand factor OS = Homo sapiens GN = VWF PE = 1 SV = 4 | 309,058 | 20.1 |
Identification of Parkin-interacting proteins in DM platelets (below 20% coverage).
| Protein ID | Protein Name | MW (Da) | % Coverage |
|---|---|---|---|
| RAC1_HUMAN | Ras-Related C3 botulinum toxin substrate 1 OS = Homo sapiens GN = RAC1 PE = 1 SV = 1 | 21,436 | 19.8 |
| KAP0_HUMAN | cAMP-dependent protein kinase type I-alpha regulatory subunit OS = Homo sapiens GN = PRKAR1A PE = 1 SV = 1 | 42,955 | 19.4 |
| PSA4_HUMAN | Proteasome subunit alpha type-4 OS = Homo sapiens GN = PSMA4 PE = 1 SV = 1 | 29,465 | 19.2 |
| FA5_HUMAN | Coagulation factor V OS = Homo sapiens GN = F5 PE = 1 SV = 4 | 251,546 | 17.9 |
| NDUAC_HUMAN | NADH dehydrogenase (ubiquinone)1 alpha subcomplex subunit 12 OS =Homo sapiensGN = NDUFA12 PE =1 SV=1 | 17,104 | 17.9 |
| VATG1_HUMAN | V-type proton ATPase subunit G 1 OS = Homo sapiens GN = ATP6V1G1 PE = 1 SV = 3 | 13,749 | 16.9 |
| S10A6_HUMAN | Protein S100-A6 OS = Homo sapiens GN = S100A6 PE = 1 SV = 1 | 10,173 | 16.7 |
| EMRE_HUMAN | Essential MCU regulator, mitochondrial OS = Homo sapiens GN = SMDT1 PE = 1 SV = 1 | 11,434 | 15.9 |
| ACO13_HUMAN | Acyl-Coenzyme A thioesterase 13 OS = Homo sapiens GN = ACOT13 PE = 1 SV = 1 | 14,951 | 15.7 |
| UBL4A_HUMAN | Ubiquitin-Like protein 4A OS = Homo sapiens GN = UBL4A PE = 1 SV = 1 | 17,766 | 15.3 |
| IMB1_HUMAN | Importin subunit beta-1 OS = Homo sapiens GN = KPNB1 PE = 1 SV = 2 | 97,108 | 15.1 |
| STAT3_HUMAN | Signal transducer and activator of transcription 3 OS = Homo sapiens GN = STAT3 PE = 1 SV = 2 | 88,011 | 13.6 |
| ATP8_HUMAN | ATP synthase protein 8 OS = Homo sapiens GN = MT-ATP8 PE = 1 SV = 1 | 7986 | 13.2 |
| RBX1_HUMAN | E3 ubiquitin-protein ligase RBX1 OS = Homo sapiens GN = RBX1 PE = 1 SV = 1 | 12,266 | 13 |
| THIO_HUMAN | Thioredoxin OS = Homo sapiens GN = TXN PE = 1 SV = 3 | 11,730 | 12.4 |
| TGFB1_HUMAN | Transforming growth factor beta-1 OS = Homo sapiens GN = TGFB1 PE = 1 SV = 2 | 44,313 | 12.1 |
| ROCK2_HUMAN | Rho-Associated protein kinase 2 OS = Homo sapiens GN = ROCK2 PE = 1 SV = 4 | 16,0799 | 12 |
| S10A9_HUMAN | Protein S100-A9 OS = Homo sapiens GN = S100A9 PE = 1 SV = 1 | 13,234 | 11.4 |
| QCR9_HUMAN | Cytochrome b-c1 complex subunit 9 OS = Homo sapiens GN = UQCR10 PE = 1 SV = 3 | 7304 | 11.1 |
| PSB7_HUMAN | Proteasome subunit beta type-7 OS = Homo sapiens GN = PSMB7 PE = 1 SV = 1 | 29,946 | 10.8 |
| TGFI1_HUMAN | Transforming growth factor beta-1-induced transcript 1 protein OS = Homo sapiens GN = TGFB1I1 PE = 1 SV = 2 | 49,782 | 10.6 |
| GLRX1_HUMAN | Glutaredoxin-1 OS = Homo sapiens GN = GLRX PE = 1 SV = 2 | 11,768 | 10.4 |
| ANT3_HUMAN | Antithrombin-III OS = Homo sapiens GN = SERPINC1 PE = 1 SV = 1 | 52,569 | 10.1 |
| UB2L6_HUMAN | Ubiquitin/ISG15-Conjugating enzyme E2 L6 OS = Homo sapiens GN = UBE2L6 PE = 1 SV = 4 | 17,757 | 9.8 |
| UFM1_HUMAN | Ubiquitin-Fold modifier 1 OS = Homo sapiens GN = UFM1 PE = 1 SV = 1 | 9112 | 9.4 |
| MGST3_HUMAN | Microsomal glutathione S-transferase 3 OS = Homo sapiens GN = MGST3 PE = 1 SV = 1 | 16,506 | 9.2 |
| ECHA_HUMAN | Trifunctional enzyme subunit alpha, mitochondrial OS = Homo sapiens GN = HADHA PE = 1 SV = 2 | 82,947 | 9 |
| ECHB_HUMAN | Trifunctional enzyme subunit beta, mitochondrial OS = Homo sapiens GN = HADHB PE = 1 SV = 3 | 51,262 | 8.9 |
| PSA5_HUMAN | Proteasome subunit alpha type-5 OS = Homo sapiens GN = PSMA5 PE = 1 SV = 3 | 26,394 | 8.7 |
| PSA2_HUMAN | Proteasome subunit alpha type-2 OS = Homo sapiens GN = PSMA2 PE = 1 SV = 2 | 25,882 | 8.1 |
| DNJA2_HUMAN | DnaJ homolog subfamily A member 2 OS = Homo sapiens GN = DNAJA2 PE = 1 SV = 1 | 45,717 | 8 |
| SODC_HUMAN | Superoxide dismutase (Cu–Zn) OS = Homo sapiens GN = SOD1 PE = 1 SV = 2 | 15,926 | 7.8 |
| UB2D2_HUMAN | Ubiquitin-Conjugating enzyme E2 D2 OS = Homo sapiens GN = UBE2D2 PE = 1 SV = 1indistinguishable | 16,724 | 7.5 |
| UBE2N_HUMAN | Ubiquitin-Conjugating enzyme E2 N OS = Homo sapiens GN = UBE2N PE = 1 SV = 1indistinguishable | 17,127 | 7.2 |
| GSTM3_HUMAN | Glutathione S-transferase Mu 3 OS = Homo sapiens GN = GSTM3 PE = 1 SV = 3 | 26,542 | 7.1 |
| CH10_HUMAN | 10 kDa heat shock protein, mitochondrial OS = Homo sapiens GN = HSPE1 PE = 1 SV = 2 | 10,925 | 6.9 |
| UBE2O_HUMAN | (E3-independent) E2 ubiquitin-conjugating enzyme OS = Homo sapiens GN = UBE2O PE = 1 SV = 3 | 141,205 | 6.9 |
| NDUS5_HUMAN | NADH dehydrogenase (ubiquinone) iron–sulfur protein 5 OS = Homo sapiens GN = NDUFS5 PE = 1 SV = 3 | 12,509 | 6.6 |
| TIM16_HUMAN | Mitochondrial import inner membrane translocase subunit TIM16 OS = Homo sapiens GN = PAM16 PE = 1 SV = 2 | 13,816 | 6.4 |
| COX5B_HUMAN | Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens GN=COX5B PE=1 SV=2 | 13,687 | 6.2 |
| CD36_HUMAN | Platelet glycoprotein 4 OS = Homo sapiens GN = CD36 PE = 1 SV = 2 | 53,019 | 5.3 |
| COX41_HUMAN | Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS = Homo sapiens GN = COX4I1 PE = 1 SV = 1 | 19,564 | 4.7 |
| AN32B_HUMAN | Acidic leucine-rich nuclear phosphoprotein 32 family member B OS = Homo sapiens GN = ANP32B PE = 1 SV = 1 | 28,770 | 4.4 |
| TXND9_HUMAN | Thioredoxin domain-containing protein 9 OS = Homo sapiens GN = TXNDC9 PE = 1 SV = 2 | 26,517 | 4 |
| ITB1_HUMAN | Integrin beta-1 OS = Homo sapiens GN = ITGB1 PE = 1 SV = 2 | 88,357 | 3.9 |
| ROCK1_HUMAN | Rho-Associated protein kinase 1 OS = Homo sapiens GN = ROCK1 PE = 1 SV = 1 | 158,076 | 3.8 |
| GRCR2_HUMAN | Glutaredoxin domain-containing cysteine-rich protein 2 OS = Homo sapiens GN = GRXCR2 PE = 3 SV = 1 | 28,266 | 3.6 |
| CATA_HUMAN | Catalase OS = Homo sapiens GN = CAT PE = 1 SV = 3 | 59,719 | 3.6 |
| VPS35_HUMAN | Vacuolar protein sorting-associated protein 35 OS = Homo sapiens GN = VPS35 PE = 1 SV = 2 | 91,649 | 3.6 |
| ITA2B_HUMAN | Integrin alpha-IIb OS = Homo sapiens GN = ITGA2B PE = 1 SV = 3 | 113,306 | 2.9 |
| ANGL5_HUMAN | Angiopoietin-rrelated protein 5 OS = Homo sapiens GN = ANGPTL5 PE = 2 SV = 3 | 44,115 | 2.6 |
| FA10_HUMAN | Coagulation factor X OS = Homo sapiens GN = F10 PE = 1 SV = 2 | 54,697 | 1.4 |
| UBP8_HUMAN | Ubiquitin carboxyl-terminal hydrolase 8 OS = Homo sapiens GN = USP8 PE = 1 SV = 1 | 127,444 | 1 |
| UBR4_HUMAN | E3 ubiquitin-protein ligase UBR4 OS = Homo sapiens GN = UBR4 PE = 1 SV = 1 | 573,476 | 0.9 |
| HD_HUMAN | Huntingtin OS = Homo sapiens GN = HTT PE = 1 SV = 2 | 347,383 | 0.7 |
| MYCB2_HUMAN | E3 ubiquitin-protein ligase MYCBP2 OS = Homo sapiens GN = MYCBP2 PE = 1 SV = 3 | 509,759 | 0.6 |
Figure 3Confirmation of interactions between Parkin and selected target proteins in human and murine platelets. (A) Immunoprecipitation of each specific antibody in pooled human DM platelets (4 HC, 5DM1, and 6DM2). We incubated 500 μg protein lysates incubated with specific antibodies overnight at 4 °C with 10% input as control. G1 represents interacting protein groups from LC-MS/MS results. G2 represents the non-interacting proteins group in LC-MS/MS results. G3 represents protein that interacted with Parkin and that were not found in the LC-MS/MS results. (B) Immunoprecipitation of each specific antibody in pooled murine platelets (3 WT and 5DM). We incubated 500 μg protein lysates incubated with specific antibodies overnight at 4 °C with 10% input as control.
Figure 4Enriched function (GO) and KEGG analysis of identified proteins. STRING (functional protein association networks) used in the grouping of identified proteins. (A) Top 20 enriched functions of Parkin-interacting proteins in human DM platelets. (B) Top 16 enriched KEGG pathways of Parkin-interacting proteins in human DM platelets.
Figure 5Parkin associated with apoptosis and platelet aggregation. (A) Western blot analysis of Parkin KO mice platelets. Parkin, Cytochrome C, active caspase3, and CD62P antibodies were used for this experiment. The numbers indicate individual mice. (B) Quantification of each group using ImageJ software. (B) Collagen induced platelet aggregation in human platelets (n = 3) after BVO2 (14-3-3 inhibitor) treatment.
Figure 6Summary of Parkin functions in DM platelets.