| Literature DB >> 32816810 |
Velislava Petrova1, Paul Kristiansen2, Gunnstein Norheim3, Solomon A Yimer4.
Abstract
Rift valley fever virus (RVFV) is a causative agent of a viral zoonosis that constitutes a major clinical burden in wild and domestic ruminants. The virus causes major outbreaks in livestock (sheep, goats, cattle and camels) and can be transmitted to humans by contaminated animal products or via arthropod vectors. Human-to-human transmission has not been reported to date, but spill-over events from animals have led to outbreaks in humans in Africa and the Arabian Peninsula. Currently, there is no licensed human vaccine against RVFV and the virus is listed as a priority pathogen by the World Health Organisation (WHO) due to the high epidemic potential and the lack of effective countermeasures. Multiple large RVFV outbreaks have been reported since the virus was discovered. During the last two decades, over 4000 cases and ~1000 deaths have been reported. The lack of systematic surveillance to estimate the true burden and incidence of human RVF disease is a challenge for planning future vaccine efficacy evaluation. This creates a need for robust diagnostic methodologies that can be deployed in remote regions to aid case confirmation, assessment of seroprevalence as well as pathogen surveillance required for the different stages of vaccine evaluation. Here, we perform comprehensive landscaping of the available diagnostic solutions for detection of RVFV in humans. Based on the identified gaps in the currently available in-house and commercially available methods, we highlight the specific investment needs for diagnostics that are critical for accelerating the development of effective vaccines against RVFV. © Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.Entities:
Keywords: Infections, diseases, disorders, injuries; diagnostics and tools; vaccines; viral haemorrhagic fevers
Mesh:
Year: 2020 PMID: 32816810 PMCID: PMC7437696 DOI: 10.1136/bmjgh-2020-002694
Source DB: PubMed Journal: BMJ Glob Health ISSN: 2059-7908
Ten largest outbreaks of RVF in humans since year 2000
| Year | Location | No of cases | No of fatalities |
| 2000 | Yemen | 1087 | 121 |
| 2007 | Sudan | 738 | 230 |
| 2006 | Kenya | 684 | 234 |
| 2000 | Saudi Arabia | 516 | 87 |
| 2006 | Tanzania | 264 | 109 |
| 2010 | Republic of South Africa | 237 | 26 |
| 2008 | Madagascar | 236 | 7 |
| 2003 | Egypt | 148 | 27 |
| 2006 | Somalia | 114 | 51 |
| 2016 | Republic of Niger | 105 | 28 |
Source: WHO reported data: https://www.who.int/news-room/fact-sheets/detail/rift-valley-fever
RVF, rift valley fever.
In-house and commercially available molecular methods for RVFV detection in human samples
| In-house nucleic acid test (NAT) methods for RVFV detection | |||
| Method | Publication | Target gene | Description |
| Real-time PCR (RT-PCR) | Bird | L | Two-step assay for high-throughput detection of 40 known strains. |
| RT-PCR | Busquets | L | One-step real-time TaqMan assay. |
| RT-PCR | Drolet | L | Can be performed in BSL-2 as it involves pathogen deactivation step. |
| qRT-PCR | Drosten | M | Part of a panel for differential diagnosis of six viral haemorrhagic fever pathogens. |
| RT-PCR | Garcia | NSs | Two-step real-time TaqМan. |
| RT-PCR | Liu | L | Developed as a TaqМan assay card for 26 pathogens. Suitable for outbreak investigation or surveillance. |
| RT-PCR | Mwaengo | L, S | Two-step real-time assay used for RVFV detection in mosquitos. |
| Nested | Sall | NSs | Qualitative. Used for 293 human and animal sera sampled during an RVF outbreak in Mauritania in 1998. |
| Nested | Sanchez-Seco | S, L | Nested PCR assay, qualitative. Uses degenerate primers in first round of PCR to capture all Phleboviruses. |
| RT-PCR | Weidmann | S | One-step assay, designed against 19 strains. |
| RT-PCR | Wilson | L, M, NSs | Multiplex RT-PCR which detects 3 segments: L and M segments as confirmatory targets, and NSs to differentiate between infection and vaccination (suitable for DIVA testing). |
BSL3, biosafety level 3; CE, approved for clinical testing; DIVA, distinguish infected from vaccinated individuals; EBOV, Ebola virus; FTD, Fast-Track Diagnostics; qPCR, quantitative PCR; RUO, approved for research use only; RVFV, rift valley fever virus; YFV, yellow fever virus.
In-house RDTs in development for RVFV detection
| Method | Publication | Description |
| LAMP | Peyrefitte | A 30 min qualitative assay. No independent EQA. |
| LAMP | Le Roux | A 30–45 min real-time assay. One EQA study with sensitivity limitations. |
| RPA-PCR | Eular | A qualitative assay with <30 min run time. Detection of a panel of 10 biothreat pathogens. Optimal performance on EQA study in 2012. |
| Rapid nanogold assay | Zaher | Colorimetric assay based on unmodified gold nanoparticles which detects unamplified RVFV RNA. Produces results in 30 min. Prototype stage. No independent EQA. |
| Pen-side test | Cêtre-Sossah | Chromatographic strip coated with antibodies against RVFV N protein. Non-quantitative. No independent EQA. |
EQA, external quality assessment; LAMP, loop-mediated isothermal amplification; RDTs, rapid diagnostic tests; RVFV, rift valley fever virus.
Figure 1Outline of diagnostic needs for vaccine development defined by the Coalition for Epidemic Preparedness Innovations (CEPI). RDT, rapid diagnostic tests; RT-PCR, real-time PCR; MERS, Middle-Eastern respiratory virus: NHPs, non-human primates; CMI, cell-mediated immunity;
In-house and commercially available serological methods for RVFV detection in humans
| In-house serological methods for RVFV detection | |||
| Method | Publication | Target antibodies | Description |
| ELISA (DIVA) | McElroy | IgM or IgG | Two parallel ELISAs which distinguish natural infections from vaccinations (recombinant N and NSs proteins). Validated in goat and human samples. Does not distinguish IgM versus IgG. |
| ELISA | Paweska | IgM and IgG | IgG sandwich and IgM capture assays for humans made using irradiated whole virus as antigen. Validated on human samples. |
| ELISA | Paweska | IgG | IgG assay for humans, made using recombinant N protein. Validated on human samples. |
| ELISA | van Vuren Jansen and Paweska (2009) | IgM and IgG | Separate IgG, IgM indirect ELISAs for humans and ruminants, which uses recombinant N protein. |
| ELISA | van Vuren | IgM or IgG | Sandwich ELISA for ruminants and humans. Does not distinguish IgM versus IgG. Includes preincubation of samples at 56 C 1 hour to reduce biosafety requirements. |
| VNT | Winchger Schreur | Any neutralising antibodies | Uses avirulent RVFV which expresses eGFP. Takes 48 hours and is more sensitive than classic VNT. Not species-specific. |
| OFIS | Sobarzo | IgG | Based on sandwich ELISA. Irradiated RVFV and control antigen are immobilised on an optical fibre. More sensitive to low-levels of serum IgG than standard ELISA. Tested on human samples. |
| Luminex | Van der Wal | IgM and IgG | Bead-based assay for simultaneous detection of antibodies against RVFV Gn and N proteins. Demonstrated utility for DIVA testing. |
| Luminex | Wu | IgG | Designed as a multipathogen assay for virus haemorrhagic fevers including RVFV. No evaluation of diagnostic sensitivity for RVFV in clinical samples. |
eGFP, enhanced green fluorescent protein; OFIS, optical fiber immunosensor; VNT, virus neutralisation test.
| Commercially available serological methods for RVFV detection | ||
| Method | Manufacturer | Approval |
| IFA RVFV IIFT IgG | EUROIMMUN | CE |
| IFA RVFV IIFT IgM | EUROIMMUN | CE |
| ELISA RVFV IgM/IgG | Biological Diagnostic Supplies Limited | CE |
| ELISA RVFV IgM | ID-Vet | At development and validation stage. |
CE, approved for clinical testing; DIVA, distinguish infected from vaccinated individuals; IFA, immunofluorescent antibody; IIFT, indirect immunofluorescence; RVFV, rift valley fever virus.