Literature DB >> 32814200

Predictive modeling of bacterial infections and antibiotic therapy needs in critically ill adults.

Garrett Eickelberg1, L Nelson Sanchez-Pinto2, Yuan Luo3.   

Abstract

Unnecessary antibiotic regimens in the intensive care unit (ICU) are associated with adverse patient outcomes and antimicrobial resistance. Bacterial infections (BI) are both common and deadly in ICUs, and as a result, patients with a suspected BI are routinely started on broad-spectrum antibiotics prior to having confirmatory microbiologic culture results or when an occult BI is suspected, a practice known as empiric antibiotic therapy (EAT). However, EAT guidelines lack consensus and existing methods to quantify patient-level BI risk rely largely on clinical judgement and inaccurate biomarkers or expensive diagnostic tests. As a consequence, patients with low risk of BI often are continued on EAT, exposing them to unnecessary side effects. Augmenting current intuition-based practices with data-driven predictions of BI risk could help inform clinical decisions to shorten the duration of unnecessary EAT and improve patient outcomes. We propose a novel framework to identify ICU patients with low risk of BI as candidates for earlier EAT discontinuation. For this study, patients suspected of having a community-acquired BI were identified in the Medical Information Mart for Intensive Care III (MIMIC-III) dataset and categorized based on microbiologic culture results and EAT duration. Using structured longitudinal data collected up to 24-, 48-, and 72-hours after starting EAT, our best models identified patients at low risk of BI with AUROCs up to 0.8 and negative predictive values >93%. Overall, these results demonstrate the feasibility of forecasting BI risk in a critical care setting using patient features found in the electronic health record and call for more extensive research in this promising, yet relatively understudied, area.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Antibiotic stewardship; Critical care; Electronic health records; MIMIC; Machine learning; Prediction models

Mesh:

Substances:

Year:  2020        PMID: 32814200      PMCID: PMC7530142          DOI: 10.1016/j.jbi.2020.103540

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  35 in total

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Authors:  Anand Kumar; Daniel Roberts; Kenneth E Wood; Bruce Light; Joseph E Parrillo; Satendra Sharma; Robert Suppes; Daniel Feinstein; Sergio Zanotti; Leo Taiberg; David Gurka; Aseem Kumar; Mary Cheang
Journal:  Crit Care Med       Date:  2006-06       Impact factor: 7.598

2.  3D-MICE: integration of cross-sectional and longitudinal imputation for multi-analyte longitudinal clinical data.

Authors:  Yuan Luo; Peter Szolovits; Anand S Dighe; Jason M Baron
Journal:  J Am Med Inform Assoc       Date:  2018-06-01       Impact factor: 4.497

3.  Rapid Detection of Methicillin-Resistant Staphylococcus aureus in BAL: A Pilot Randomized Controlled Trial.

Authors:  Joseph R Paonessa; Raj D Shah; Chiagozie I Pickens; Bryan D Lizza; Helen K Donnelly; Michael Malczynski; Chao Qi; Richard G Wunderink
Journal:  Chest       Date:  2019-02-15       Impact factor: 9.410

4.  An Interpretable Machine Learning Model for Accurate Prediction of Sepsis in the ICU.

Authors:  Shamim Nemati; Andre Holder; Fereshteh Razmi; Matthew D Stanley; Gari D Clifford; Timothy G Buchman
Journal:  Crit Care Med       Date:  2018-04       Impact factor: 7.598

5.  From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system.

Authors:  Eren Gultepe; Jeffrey P Green; Hien Nguyen; Jason Adams; Timothy Albertson; Ilias Tagkopoulos
Journal:  J Am Med Inform Assoc       Date:  2013-08-19       Impact factor: 4.497

Review 6.  Antibiotic Use in the Intensive Care Unit: Optimization and De-Escalation.

Authors:  Maureen Campion; Gail Scully
Journal:  J Intensive Care Med       Date:  2018-03-13       Impact factor: 3.510

7.  Value of gram stain examination of lower respiratory tract secretions for early diagnosis of nosocomial pneumonia.

Authors:  F Blot; B Raynard; E Chachaty; C Tancrède; S Antoun; G Nitenberg
Journal:  Am J Respir Crit Care Med       Date:  2000-11       Impact factor: 21.405

8.  Impact of an antimicrobial utilization program on antimicrobial use at a large teaching hospital: a randomized controlled trial.

Authors:  Bernard C Camins; Mark D King; Jane B Wells; Heidi L Googe; Manish Patel; Ekaterina V Kourbatova; Henry M Blumberg
Journal:  Infect Control Hosp Epidemiol       Date:  2009-10       Impact factor: 3.254

9.  Efficacy and safety of procalcitonin guidance in reducing the duration of antibiotic treatment in critically ill patients: a randomised, controlled, open-label trial.

Authors:  Evelien de Jong; Jos A van Oers; Albertus Beishuizen; Piet Vos; Wytze J Vermeijden; Lenneke E Haas; Bert G Loef; Tom Dormans; Gertrude C van Melsen; Yvette C Kluiters; Hans Kemperman; Maarten J van den Elsen; Jeroen A Schouten; Jörn O Streefkerk; Hans G Krabbe; Hans Kieft; Georg H Kluge; Veerle C van Dam; Joost van Pelt; Laura Bormans; Martine Bokelman Otten; Auke C Reidinga; Henrik Endeman; Jos W Twisk; Ewoudt M W van de Garde; Anne Marie G A de Smet; Jozef Kesecioglu; Armand R Girbes; Maarten W Nijsten; Dylan W de Lange
Journal:  Lancet Infect Dis       Date:  2016-03-02       Impact factor: 25.071

10.  Diagnosis and management of complicated intra-abdominal infection in adults and children: guidelines by the Surgical Infection Society and the Infectious Diseases Society of America.

Authors:  Joseph S Solomkin; John E Mazuski; John S Bradley; Keith A Rodvold; Ellie J C Goldstein; Ellen J Baron; Patrick J O'Neill; Anthony W Chow; E Patchen Dellinger; Soumitra R Eachempati; Sherwood Gorbach; Mary Hilfiker; Addison K May; Avery B Nathens; Robert G Sawyer; John G Bartlett
Journal:  Clin Infect Dis       Date:  2010-01-15       Impact factor: 9.079

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  4 in total

1.  Application of Machine Learning in Intensive Care Unit (ICU) Settings Using MIMIC Dataset: Systematic Review.

Authors:  Mahanazuddin Syed; Shorabuddin Syed; Kevin Sexton; Hafsa Bareen Syeda; Maryam Garza; Meredith Zozus; Farhanuddin Syed; Salma Begum; Abdullah Usama Syed; Joseph Sanford; Fred Prior
Journal:  Informatics (MDPI)       Date:  2021-03-03

2.  Development and validation of MicrobEx: an open-source package for microbiology culture concept extraction.

Authors:  Garrett Eickelberg; Yuan Luo; L Nelson Sanchez-Pinto
Journal:  JAMIA Open       Date:  2022-04-22

Review 3.  Modeling transmission of pathogens in healthcare settings.

Authors:  Anna Stachel; Lindsay T Keegan; Seth Blumberg
Journal:  Curr Opin Infect Dis       Date:  2021-08-01       Impact factor: 4.968

Review 4.  Artificial Intelligence in Infection Management in the ICU.

Authors:  Thomas De Corte; Sofie Van Hoecke; Jan De Waele
Journal:  Crit Care       Date:  2022-03-22       Impact factor: 9.097

  4 in total

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