| Literature DB >> 32812204 |
Dan Assaf1,2, Ya'ara Gutman1,2, Yair Neuman3, Gad Segal1,4, Sharon Amit1,5, Shiraz Gefen-Halevi1,5, Noya Shilo1,6, Avi Epstein1,7, Ronit Mor-Cohen1,8, Asaf Biber1,9, Galia Rahav1,9, Itzchak Levy1,9, Amit Tirosh10,11.
Abstract
Among patients with Coronavirus disease (COVID-19), the ability to identify patients at risk for deterioration during their hospital stay is essential for effective patient allocation and management. To predict patient risk for critical COVID-19 based on status at admission using machine-learning models. Retrospective study based on a database of tertiary medical center with designated departments for patients with COVID-19. Patients with severe COVID-19 at admission, based on low oxygen saturation, low partial arterial oxygen pressure, were excluded. The primary outcome was risk for critical disease, defined as mechanical ventilation, multi-organ failure, admission to the ICU, and/or death. Three different machine-learning models were used to predict patient deterioration and compared to currently suggested predictors and to the APACHEII risk-prediction score. Among 6995 patients evaluated, 162 were hospitalized with non-severe COVID-19, of them, 25 (15.4%) patients deteriorated to critical COVID-19. Machine-learning models outperformed the all other parameters, including the APACHE II score (ROC AUC of 0.92 vs. 0.79, respectively), reaching 88.0% sensitivity, 92.7% specificity and 92.0% accuracy in predicting critical COVID-19. The most contributory variables to the models were APACHE II score, white blood cell count, time from symptoms to admission, oxygen saturation and blood lymphocytes count. Machine-learning models demonstrated high efficacy in predicting critical COVID-19 compared to the most efficacious tools available. Hence, artificial intelligence may be applied for accurate risk prediction of patients with COVID-19, to optimize patients triage and in-hospital allocation, better prioritization of medical resources and improved overall management of the COVID-19 pandemic.Entities:
Keywords: COVID-19; Disease severity; Machine learning; Prediction; Risk stratification
Mesh:
Year: 2020 PMID: 32812204 PMCID: PMC7433773 DOI: 10.1007/s11739-020-02475-0
Source DB: PubMed Journal: Intern Emerg Med ISSN: 1828-0447 Impact factor: 3.397
Fig. 1Patients flow chart for inclusion and outcome. RR, respiratory rate; PaO2 arterial oxygen partial pressure; FiO2 fraction of inspiration oxygen; ICU intensive care unit
Patients demographics, clinical data and comparison of the Critical COVID-19 infection group vs. the non-critical group
| Variable | All sample | Noncritical | Critical | |
|---|---|---|---|---|
| Average/ | Average/ | Average/ | ||
| Gender (male) | 107 (66.0%) | 88 (64.2%) | 19 (76.0%) | 0.25 |
| Age (years) mean (SD) | 60.35 (16.3) | 59.4 (16) | 65.5 (16.9) | 0.077 |
| BMI mean (SD) | 28.73 (5.1) | 28.8 (5.4) | 28.6 (3.4) | 0.845 |
| Comorbidity | ||||
| Presence | 136 (84.0%) | 112 (81.8%) | 24 (96.0%) | 0.08 |
| HTN | 63 (38.9%) | 49 (35.8%) | 14 (56.0%) | 0.056 |
| Obesity | 23 (14.2%) | 16 (11.7%) | 7 (28.0%) | 0.055 |
| OSA | 9 (5.6%) | 7 (5.1%) | 2 (8.0%) | 0.63 |
| Heavy smoking | 21 (13.0%) | 17 (12.4%) | 4 (16.0%) | 0.75 |
| IHD | 17 (10.5%) | 13 (9.5%) | 4 (16.0%) | 0.303 |
| Diabetes | 43 (26.5%) | 33 (24.1%) | 10 (40.0%) | 0.098 |
| COPD | 5 (3.1%) | 2 (1.5%) | 3 (12.0%) | |
| Asthma | 12 (7.4%) | 11 (8.0%) | 1 (4.0%) | 0.694 |
| Vital signs mean (SD) | ||||
| Fever (c) | 37.63 (0.9) | 37.57 (0.8) | 37.9 (1.1) | 0.081 |
| MAP | 93.99 (10.6) | 94.1 (10.4) | 93.4 (11.7) | 0.687 |
| Pulse (bpm) | 93.93 (15.3) | 93.1 (14.5) | 98.6 (18.5) | 0.148 |
| RR | 19.96 (5.8) | 19.1 (4.9) | 23.6 (7.8) | |
| Saturation (%) | 94.18 (4.1) | 94.9 (4.8) | 90.4 (4.8) | |
| SOFA score median (range) | 0 (0–5) | 0 (0–5) | 0 (1–3) | 0.43 |
| APACHE II score median (range) | 7 (0–18) | 6 (0–12) | 10 (2–18) | |
| Verified exposure | 47 (29.0%) | 39 (28.7%) | 8 (32%) | 0.737 |
| LOS median (range), days* | 6 (1–42) | 5 (1–36) | 12 (1–42) | |
| Time from symptoms median (range), days | 6 (0–21) | 7 (0–21) | 4 (0–11) | 0.11 |
The significant values are bold as required
HTN hypertension; OSA obstructive sleep apnea; IHD ischemic heart disease; COPD chronic obstructive pulmonary disease; MAP mean arterial pressure; RR respiratory rate; SOFA sequential organ failure assessment; APACHE Acute Physiology And Chronic Health Evaluation II; LOS length of stay
*excluding the patients still admitted during the follow up period
Lab works comparison of the Critical COVID-19 infection group vs. the non-critical group
| Variable | All sample | Non-critical | Critical | |
|---|---|---|---|---|
| Average/ | Average/ | Average/ | ||
| Blood count mean (SD) | ||||
| WBC (K/mcL) | 6.68 (3.8) | 6.15 (2.5) | 9.4 (7) | |
| HGB (g/dl) | 13.4 (1.6) | 13.45 (1.5) | 13.16 (2.3) | 0.687 |
| HCT (%) | 40.3 (4.7) | 40.38 (4.2) | 39.93 (6.8) | 0.987 |
| PLT (K/mcL) | 200.1 (85.5) | 195.65 (80.9) | 223.4 (105.1) | 0.177 |
| Neutrophils (K/mcL) | 4.91 (2.9) | 4.59 (2.4) | 6.59 (4.3) | |
| Lymphocyte (K/mcL) | 1.18 (2.3) | 0.99 (0.5) | 2.14 (5.5) | 0.226 |
| Coagulations mean (SD) (missing data) | ||||
| PT (sec) ( | 82.96 (18.3) | 82 (19.4) | 86 (14.1) | 0.468 |
| INR ( | 1.12 (0.2) | 1.12 (0.2) | 1.1 (0.1) | 0.567 |
| Fibrinogen (mg/dl) ( | 520.8 (232.1) | 498.4 (243.9) | 556.7 (215.1) | 0.47 |
| 2799.8 (8250.9) | 1709.1 (2221.9) | 5045.3 (14,090.7) | 0.53 | |
| Chemistry mean (SD) | ||||
| Creatinine (mg/dl) | 0.97 (0.5) | 0.95 (0.5) | 1.1 (0.4) | 0.078 |
| Sodium (meq/l) | 135.08 (4.2) | 135.53 (4) | 132.7 (4.4) | |
| Potassium (meq/l) | 4.25 (0.5) | 4.25 (0.44) | 4.27 (0.7) | 0.515 |
| Bilirubin (mg/dl) | 0.61 (0.3) | 0.61 (0.24) | 0.62 (0.32) | 0.78 |
| AST (IU/l) | 44.47 (29.7) | 41.36 (26.2) | 60.56 (40.3) | |
| ALT (IU/l) | 33.14 (29.5) | 32.93 (31.2) | 34.24 (19.3) | 0.398 |
| LDH (IU/l) | 344.55 (135) | 327.3 (129.6) | 436.6 (128.1) | |
| Albumin (g/dl) | 3.87 (0.5) | 3.92 (0.44) | 3.61 (0.57) | |
| CPK (IU/l) | 372 (1590) | 188.6 (332.8) | 1173.2 (3583.6) | |
| CRP (mg/l) | 83.2 (71.4) | 75.53 (64.5) | 121.85 (91.2) | |
| Ferritin (ng/ml) ( | 696.2 (1444) | 576.1 (544.1) | 1105.8 (2892.3) | 0.294 |
| Venous blood gas test mean (SD) (missing data) | ||||
| pH ( | 7.38 (0.08) | 7.38 (0.06) | 7.36 (0.12) | 0.693 |
| PCO2 ( | 42.5 (7.6) | 42.55 (7.2) | 42.4 (8.6) | 0.925 |
| PO2 ( | 34.7 (19.6) | 32.5 (15.2) | 42.8 (29.9) | 0.431 |
| Lactate ( | 20.9 (7.4) | 21.02 (7.1) | 20.55 (8.5) | 0.5 |
The significant values are bold as required
WBC white blood count; HGB hemoglobin; HCT hematocrit; PLT platelets; PT prothrombin time; INR international normalized ratio; AST Aspartate transaminase; ALT Alanine transaminase; LDH lactate dehydrogenase; CPK creatinine phosphokinase; CRP C-reactive protein
Single variable prediction ability for critical infection using ROC analysis
| variable | AUC | CI | Cutoff | Sen (%) | Spec (%) | PPV (%) | NPV (%) | ACC (%) | MCC | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| APACHE II | 0.789 | (0.69–0.89) | 8.5 | 68 | 81 | 39.5 | 93.3 | 79 | 0.5 | 0.4 | |
| Saturation | 0.787 | (0.68–0.89) | 93.5 | 80 | 75 | 37 | 95.3 | 75.8 | 0.51 | 0.42 | |
| LDH | 0.745 | (0.65–0.84) | 349.5 | 75 | 62.5 | 27.3 | 93 | 64.5 | 0.4 | 0.28 | |
| RR | 0.72 | (0.59–0.86) | 19.5 | 83.3 | 59.5 | 31.9 | 94 | 63.9 | 0.46 | 0.33 | |
| Sodium | 0.72 | (0.61–0.83) | 134.5 | 76 | 66.4 | 30.2 | 93.5 | 67.9 | 0.43 | 0.32 | |
| Albumin | 0.694 | (0.56–0.83) | 3.55 | 64 | 84.8 | 45.7 | 92.2 | 81.3 | 0.53 | 0.43 | |
| AST | 0.691 | (0.59–0.79) | 40.5 | 72 | 60.5 | 26.1 | 91.8 | 62.3 | 0.38 | 0.24 | |
| CPK | 0.67 | (0.52–0.82) | 290.5 | 47.4 | 88 | 47.4 | 88 | 80.4 | 0.47 | 0.35 | |
| CRP | 0.657 | (0.53–0.78) | 83.9 | 68 | 64.3 | 27.4 | 91 | 64.9 | 0.39 | 0.24 | |
| Neutrophils | 0.643 | (0.5–0.79) | 5.06 | 64 | 71 | 29.6 | 91.2 | 69.9 | 0.41 | 0.27 | |
| WBC | 0.642 | (0.49–0.79) | 6.93 | 64 | 76.3 | 34 | 91.7 | 74.4 | 0.44 | 0.32 | |
| Age | 0.611 | 0.077 | (0.48–0.74) | 63.85 | 64 | 59.1 | 22.2 | 90 | 59.9 | 0.33 | 0.17 |
| Creatinine | 0.611 | 0.078 | (0.5–0.72) | 0.78 | 88 | 37.4 | 21.2 | 94.2 | 45.5 | 0.34 | 0.2 |
| Fever | 0.61 | 0.082 | (0.48–0.74) | 38.35 | 36 | 86.1 | 32.1 | 88.1 | 78.4 | 0.34 | 0.21 |
| Pulse | 0.591 | 0.148 | (0.46–0.72) | 103 | 40 | 78.8 | 25.6 | 87.8 | 72.8 | 0.31 | 0.16 |
| PLT | 0.585 | 0.18 | (0.45–0.73) | 216 | 56 | 72.5 | 28 | 89.6 | 69.9 | 0.37 | 0.22 |
| Lymphocyte | 0.576 | 0.23 | (0.45–0.7) | 0.68 | 84 | 32.8 | 19.3 | 91.5 | 41 | 0.31 | 0.13 |
| ALT | 0.553 | 0.39 | (0.43–0.67) | 19.5 | 88 | 30.2 | 19.6 | 92.9 | 39.6 | 0.32 | 0.15 |
| SOFA | 0.544 | 0.48 | (0.43–0.66) | 0.5 | 56% | 55.5 | 18.7 | 87.4 | 55.6 | 0.28 | 0.08 |
| Potassium | 0.54 | 0.52 | (0.41–0.67) | 3.95 | 40 | 73.3 | 22.2 | 86.5 | 67.9 | 0.29 | 0.11 |
| Bilirubin | 0.518 | 0.78 | (0.39–0.65) | 0.53 | 52 | 60.9 | 20.6 | 86.7 | 59.5 | 0.3 | 0.1 |
| HCT | 0.5 | 0.99 | (0.37–0.64) | 44.17 | 24 | 85.5 | 24 | 85.5 | 75.6 | 0.24 | 0.09 |
| HGB | 0.475 | 0.69 | (0.34–0.61) | 14.95 | 24 | 86.3 | 25 | 85.6 | 76.3 | 0.24 | 0.1 |
The significant values are bold as required
APACHE Acute Physiology And Chronic Health Evaluation II; LDH (IU/l) lactate dehydrogenase; RR respiratory rate; AST (IU/l) Aspartate transaminase; CPK (IU/l), creatinine phosphokinase; CRP C-reactive protein; WBC (K/mcL), white blood count; PLT (K/mcL), platelets; ALT (IU/l), Alanine transaminase; SOFA sequential organ failure assessment; HCT (%), hematocrit; HGB (g/dl) hemoglobin
Fig. 2Prediction abilities and features of the different models. Radar plot of predication abilities for critical patients (a) and feature selection output—importance to the model in percentage (b), ANN artificial neural network; AUC area under the curve; PPV positive predictive value; NPV negative predictive value, WBC white blood cell; LDH lactate dehydrogenase; AST aspartate transaminase; CRP C-reactive protein; HCT hematocrit