Literature DB >> 32809200

Phytobricks: Manual and Automated Assembly of Constructs for Engineering Plants.

Yao-Min Cai1, Jose A Carrasco Lopez1, Nicola J Patron2.   

Abstract

Phytobricks are standardized DNA parts for plants that can be assembled hierarchically into transcriptional units and, subsequently, into multigene constructs. Phytobricks each contain the sequences of one or more functional elements that comprise eukaryotic transcription units, with sequence features that enable them to be used interchangeably in one-step cloning reactions to facilitate combinatorial assembly. The simplicity and efficiency of this one-step reaction has enabled Phytobrick assembly to be miniaturized and automated on liquid handing platforms. In this method, we describe how to design and construct new Phytobricks as well as how to assemble them in both manual and nanoscale automated one-step reactions. Finally, we describe a high-throughput method for sequence verification of assembled plasmids.

Keywords:  Automation; DNA assembly; Golden Gate; Liquid handling; Molecular cloning; Plant biotechnology; Plant synthetic biology

Mesh:

Substances:

Year:  2020        PMID: 32809200     DOI: 10.1007/978-1-0716-0908-8_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

Review 1.  Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species.

Authors:  Koray Malcı; Emma Watts; Tania Michelle Roberts; Jamie Yam Auxillos; Behnaz Nowrouzi; Heloísa Oss Boll; Cibele Zolnier Sousa do Nascimento; Andreas Andreou; Peter Vegh; Sophie Donovan; Rennos Fragkoudis; Sven Panke; Edward Wallace; Alistair Elfick; Leonardo Rios-Solis
Journal:  ACS Synth Biol       Date:  2022-08-08       Impact factor: 5.249

2.  Reconstitution of monoterpene indole alkaloid biosynthesis in genome engineered Nicotiana benthamiana.

Authors:  Quentin M Dudley; Seohyun Jo; Delia Ayled Serna Guerrero; Monika Chhetry; Mark A Smedley; Wendy A Harwood; Nathaniel H Sherden; Sarah E O'Connor; Lorenzo Caputi; Nicola J Patron
Journal:  Commun Biol       Date:  2022-09-10

3.  GB_SynP: A Modular dCas9-Regulated Synthetic Promoter Collection for Fine-Tuned Recombinant Gene Expression in Plants.

Authors:  Elena Moreno-Giménez; Sara Selma; Camilo Calvache; Diego Orzáez
Journal:  ACS Synth Biol       Date:  2022-08-31       Impact factor: 5.249

4.  The renaissance and enlightenment of Marchantia as a model system.

Authors:  John L Bowman; Mario Arteaga-Vazquez; Frederic Berger; Liam N Briginshaw; Philip Carella; Adolfo Aguilar-Cruz; Kevin M Davies; Tom Dierschke; Liam Dolan; Ana E Dorantes-Acosta; Tom J Fisher; Eduardo Flores-Sandoval; Kazutaka Futagami; Kimitsune Ishizaki; Rubina Jibran; Takehiko Kanazawa; Hirotaka Kato; Takayuki Kohchi; Jonathan Levins; Shih-Shun Lin; Hirofumi Nakagami; Ryuichi Nishihama; Facundo Romani; Sebastian Schornack; Yasuhiro Tanizawa; Masayuki Tsuzuki; Takashi Ueda; Yuichiro Watanabe; Katsuyuki T Yamato; Sabine Zachgo
Journal:  Plant Cell       Date:  2022-09-27       Impact factor: 12.085

5.  Biofoundry-assisted expression and characterization of plant proteins.

Authors:  Quentin M Dudley; Yao-Min Cai; Kalyani Kallam; Hubert Debreyne; Jose A Carrasco Lopez; Nicola J Patron
Journal:  Synth Biol (Oxf)       Date:  2021-09-11
  5 in total

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