Literature DB >> 32807852

Environmental gradients of selection for an alpine-obligate bird, the white-tailed ptarmigan (Lagopus leucura).

Shawna J Zimmerman1, Cameron L Aldridge2, Kathryn M Langin2, Gregory T Wann2, R Scott Cornman2, Sara J Oyler-McCance2.   

Abstract

The warming climate will expose alpine species adapted to a highly seasonal, harsh environment to novel environmental conditions. A species can shift their distribution, acclimate, or adapt in response to a new climate. Alpine species have little suitable habitat to shift their distribution, and the limits of acclimation will likely be tested by climate change in the long-term. Adaptive genetic variation may provide the raw material for species to adapt to this changing environment. Here, we use a genomic approach to describe adaptive divergence in an alpine-obligate species, the white-tailed ptarmigan (Lagopus leucura), a species distributed from Alaska to New Mexico, across an environmentally variable geographic range. Previous work has identified genetic structure and morphological, behavioral, and physiological differences across the species' range; however, those studies were unable to determine the degree to which adaptive divergence is correlated with local variation in environmental conditions. We used a genome-wide dataset generated from 95 white-tailed ptarmigan distributed throughout the species' range and genotype-environment association analyses to identify the genetic signature and environmental drivers of local adaptation. We detected associations between multiple environmental gradients and candidate adaptive loci, suggesting ptarmigan populations may be locally adapted to the plant community composition, elevation, local climate, and to the seasonality of the environment. Overall, our results suggest there may be groups within the species' range with genetic variation that could be essential for adapting to a changing climate and helpful in guiding conservation action.

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Mesh:

Year:  2020        PMID: 32807852      PMCID: PMC7852610          DOI: 10.1038/s41437-020-0352-6

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  40 in total

1.  Using environmental correlations to identify loci underlying local adaptation.

Authors:  Graham Coop; David Witonsky; Anna Di Rienzo; Jonathan K Pritchard
Journal:  Genetics       Date:  2010-06-01       Impact factor: 4.562

2.  Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering.

Authors:  Sharon R Browning; Brian L Browning
Journal:  Am J Hum Genet       Date:  2007-09-21       Impact factor: 11.025

3.  Keeping pace with fast climate change: can arctic life count on evolution?

Authors:  Dominique Berteaux; Denis Réale; Andrew G McAdam; Stan Boutin
Journal:  Integr Comp Biol       Date:  2004-04       Impact factor: 3.326

4.  Evaluation of redundancy analysis to identify signatures of local adaptation.

Authors:  Thibaut Capblancq; Keurcien Luu; Michael G B Blum; Eric Bazin
Journal:  Mol Ecol Resour       Date:  2018-06-17       Impact factor: 7.090

Review 5.  Structure and function of epidermal growth factor-like regions in proteins.

Authors:  E Appella; I T Weber; F Blasi
Journal:  FEBS Lett       Date:  1988-04-11       Impact factor: 4.124

6.  Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin.

Authors:  Chris J Brauer; Michael P Hammer; Luciano B Beheregaray
Journal:  Mol Ecol       Date:  2016-09-17       Impact factor: 6.185

7.  Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.

Authors:  Rami A Dalloul; Julie A Long; Aleksey V Zimin; Luqman Aslam; Kathryn Beal; Le Ann Blomberg; Pascal Bouffard; David W Burt; Oswald Crasta; Richard P M A Crooijmans; Kristal Cooper; Roger A Coulombe; Supriyo De; Mary E Delany; Jerry B Dodgson; Jennifer J Dong; Clive Evans; Karin M Frederickson; Paul Flicek; Liliana Florea; Otto Folkerts; Martien A M Groenen; Tim T Harkins; Javier Herrero; Steve Hoffmann; Hendrik-Jan Megens; Andrew Jiang; Pieter de Jong; Pete Kaiser; Heebal Kim; Kyu-Won Kim; Sungwon Kim; David Langenberger; Mi-Kyung Lee; Taeheon Lee; Shrinivasrao Mane; Guillaume Marcais; Manja Marz; Audrey P McElroy; Thero Modise; Mikhail Nefedov; Cédric Notredame; Ian R Paton; William S Payne; Geo Pertea; Dennis Prickett; Daniela Puiu; Dan Qioa; Emanuele Raineri; Magali Ruffier; Steven L Salzberg; Michael C Schatz; Chantel Scheuring; Carl J Schmidt; Steven Schroeder; Stephen M J Searle; Edward J Smith; Jacqueline Smith; Tad S Sonstegard; Peter F Stadler; Hakim Tafer; Zhijian Jake Tu; Curtis P Van Tassell; Albert J Vilella; Kelly P Williams; James A Yorke; Liqing Zhang; Hong-Bin Zhang; Xiaojun Zhang; Yang Zhang; Kent M Reed
Journal:  PLoS Biol       Date:  2010-09-07       Impact factor: 8.029

8.  Deficiency of the sixth component of complement and susceptibility to Neisseria meningitidis infections: studies in 10 families and five isolated cases.

Authors:  A Orren; P C Potter; R C Cooper; E du Toit
Journal:  Immunology       Date:  1987-10       Impact factor: 7.397

9.  Adaptive phenotypic plasticity in response to climate change in a wild bird population.

Authors:  Anne Charmantier; Robin H McCleery; Lionel R Cole; Chris Perrins; Loeske E B Kruuk; Ben C Sheldon
Journal:  Science       Date:  2008-05-09       Impact factor: 47.728

10.  Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change.

Authors:  Ke Bi; Tyler Linderoth; Sonal Singhal; Dan Vanderpool; James L Patton; Rasmus Nielsen; Craig Moritz; Jeffrey M Good
Journal:  PLoS Genet       Date:  2019-05-03       Impact factor: 5.917

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