| Literature DB >> 32807242 |
Julien Guiot1, Monique Henket2, Béatrice Andre3, Marielle Herzog4, Nathalie Hardat4, Makon-Sebastien Njock2,3, Catherine Moermans2, Michel Malaise3, Renaud Louis2.
Abstract
BACKGROUND: Systemic sclerosis (SSc) is a rare connective tissue disease associated with rapid evolving interstitial lung disease (SSc-ILD), driving its mortality. Specific biomarkers associated with the evolution of the lung disease are highly needed. We aimed to identify specific biomarkers of SSc-ILD to predict the evolution of the disease. Nucleosomes are stable DNA/protein complexes that are shed into the blood stream making them ideal candidates for biomarkers.Entities:
Year: 2020 PMID: 32807242 PMCID: PMC7430109 DOI: 10.1186/s13148-020-00915-4
Source DB: PubMed Journal: Clin Epigenetics ISSN: 1868-7075 Impact factor: 6.551
Subjects characteristics
| SSc ( | SSc-ILD ( | |
|---|---|---|
| 56 ± 12 | 60 ± 13 | |
| 17/50 | 6/25 | |
| 25 ± 4 | 25 ± 4 | |
| 48/28/24 | 55/28/17 | |
| 15 ± 17 | 6.9 ± 8.4 | |
| 1.7 (0.7-5.1) | 2.4 (1.1-6.1) | |
| 98 ± 22 | 88 ± 23* | |
| 104 ± 20 | 90 ± 22** | |
| 78 ± 10 | 81 ± 8 | |
| 101 ± 15 | 85 ± 19*** | |
| 71 ± 20 | 56 ± 16** | |
| 79 ± 19 | 74 ± 14 | |
| / | 5 (5-25) | |
| 14 | 38 | |
| 24 | 28 | |
| 5 (5-5) | 10 (5-10) | |
| 36/62/2 | 16/80/4 | |
| 6.93 ± 8.47 | 5.55 ± 5.87 | |
| 2 (0-5)° | 2 (0-4)° | |
| 38/59/6.3/4.8 | 41/41/14/0 | |
| 22 | 21 | |
| 6.8 | 0 | |
| 2 | 37 |
Data are expressed as mean ± SD
NS non-smoker, FS former smoker, S smoker, IT immunosuppressive therapy (mycophenolate mofetil, methotrexate, cyclophosphamide), SSc systemic sclerosis, lcSSc limited cutaneous, dSSc diffuse cutaneous SSc, SS sine scleroderma
°Values are expressed as mean ± SD when parametrics and median (IQR) when non parametrics
1GI tract score, missing value: SSc 20/67; SSc-ILD 12/31
*p < 0.05
**p < 0.01
***p < 0.001 compared to healthy subjects
Levels blood biomarkers
| Biomarkers | T1 ( | T2 ( | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SSc ( | SSc-ILD ( | Sig. | SSc ( | SSc-ILD ( | Sig. | |||||
| Median | IQR | Median | IQR | Median | IQR | Median | IQR | |||
| MMP-9 | 820.5 | 435-1354 | 1243.4 | 887-1724 | * | 1164.9 | 389-1599 | 903.14 | 366-1647 | |
| IGFBP-1 | 14.96 | 8.6-25.5 | 5.74 | 2.2-14.3 | *** | 11.04 | 7.3-24.6 | 5.6 | 2.7-33.1 | |
| H3.1 | 66.4 | 41-102 | 82.6 | 65-146 | * | 56.2 | 41-79 | 77.6 | 55-172 | * |
The levels of IGFBP-1, MMP-9, and H3.1 containing cf-nucleosomes (median and IQR) were evaluated at T1 and T2 for SSc and SSC-ILD patients. Significant differences were observed between SSc and SSc-ILD patients for all three biomarkers at T1. At T2, only the level of H3.1 containing cf-nucleosome remained significantly higher in SSc-ILD patients
P values were determined by Mann-Whitney rank-sum test
Fig. 1Individual biomarkers in the blood of SSc compared to SSc-ILD at baseline. Boxplot expressing medians and IQ range for each biomarker in function of diagnosis at T1. The box plots showed significantly higher levels for H3.1 containing cf-nucleosomes (a) and MMP-9 (b) in patients with SSc-ILD (n = 31) compared with SSc patients (n = 67) (p < 0.05 for both), in contrast IGFBP-1 (c) was significantly lower level in patient with SSc-ILD (p < 0.001). P values were determined by Mann-Whitney rank-sum test. The box plot shows the median and the 25th and 75th percentiles; the whiskers indicate 1.5 times the interquartile range (IQR)
Fig. 2Roc curve and box plot for discrimination of SSc vs SSc-ILD in the combination of H3.1 containing cf-nucleosome associated with IGFBP-1 and MMP-9. A model with three biomarkers: H3.1 containing cf-nucleosome, MMP-9, and IGFBP-1 discriminated patients with scleroderma with fibrosis (SSc-ILD) versus scleroderma without fibrosis (SSc): a ROC curves for discrimination of SSc-ILD patients vs SSc patients. The model reached a sensitivity of 58% and 42% at respectively 80% specificity and 90% specificity. The AUC was 0.77 (pModel < 0.001; pNu.Q H3.1 = 0.022; pMMP-9 = 0.047; pIGFBP-1 = 0.01). b Box plot demonstrating significantly higher score in patients with a SSC-ILD (n = 31) compared with SSc patients (n = 67) (p < 0.001). The score for each group was achieved with pre-processed ELISA data from Nu.Q™ H3.1, MMP-9, and IGFBP-1 assays. A binary logistic regression model was used to calculate the probability of SSc-ILD in relation to SSc. P values were determined by Mann-Whitney rank-sum test. The box plot shows the median and the 25th and 75th percentiles; the whiskers indicate 1.5 times the interquartile range (IQR)
Fig. 3Correlation of the combined model IGFBP-1, MMP-9, and H3.1 containing cf-nucleosomes against FVC (% pred) and TLC (% pred). Significant negative correlations are observed with FVC (r = −0.218, p < 0.01) and with TLC (r = −0.315, p < 0.05)
Correlations between the model and PFT at baseline
The level of the combined model with IGFBP-1, MMP-9, and H3.1 containing cf-nucleosomes (probability of SSC-ILD) computed at T1 was evaluated in relation to PFT for all patients. Significant negative correlations are observed between the model and FVC (% pred) and TLC (% pred). The negative correlation is still significant and even stronger between the model computed with T1 measurements and TLC (% pred) quantified at T2 (but not with FVC at T2), which means that the model could be a predictor of disease progression for TLC (% pred) at T2
Fig. 4Predictive value of the model. Linear regression with the model as an explanatory variable for PFT. a A significant linear regression with all patients (SSc + SSc-ILD), p = 0.013, with R2 = 19%; the score of the model H3.1 containing cf-nucleosome, IGFBP-1, MMP-9 at T1 has a predictive power over the Rodnan score at T2 (n = 32, nSSc = 24, and nSSc-ILD = 8). b A Significant linear regression with p = 0.023 and R2 = 54.4% was observed for the SSc-ILD group: variations of DLCO between T1 and T2 is explained by the variation of the model between these two-time points (n = 9)