Chiara De Rosa1, Andrea Melchior2, Martina Sanadar2, Marilena Tolazzi2, Alejandro Giorgetti3, Rui P Ribeiro3, Chiara Nardon1, Fabio Piccinelli1. 1. Luminescent Materials Laboratory, Department of Biotechnology, University of Verona and INSTM - UdR Verona, Strada Le Grazie 15, 37134 Verona, Italy. 2. Laboratory of Chemical Technologies, Polytechnic Department of Engineering and Architecture, University of Udine, via Cotonificio 108, 33100 Udine, Italy. 3. Applied Bioinformatics Laboratory, Department of Biotechnology, University of Verona, Strada Le Grazie 15, 37134 Verona, Italy.
Abstract
The cationic enantiopure (R,R) and luminescent Eu(III) complex [Eu(bisoQcd)(H2O)2] OTf (with bisoQcd = N,N'-bis(2-isoquinolinmethyl)-trans-1,2-diaminocyclohexane N,N'-diacetate and OTf = triflate) was synthesized and characterized. At physiological pH, the 1:1 [Eu(bisoQcd)(H2O)2]+ species, possessing two water molecules in the inner coordination sphere, is largely dominant. The interaction with bovine serum albumin (BSA) was studied by means of several experimental techniques, such as luminescence spectroscopy, isothermal titration calorimetry (ITC), molecular docking (MD), and molecular dynamics simulations (MDS). In this direction, a ligand competition study was also performed by using three clinically established drugs (i.e., ibuprofen, warfarin, and digitoxin). The nature of this interaction is strongly affected by the type of the involved heteroaromatic antenna in the Eu(III) complexes. In fact, the presence of isoquinoline rings drives the corresponding complex toward the protein superficial area containing the tryptophan residue 134 (Trp134). As the main consequence, the metal center undergoes the loss of one water molecule upon interaction with the side chain of a glutamic acid residue. On the other hand, the similar complex containing pyridine rings ([Eu(bpcd)(H2O)2]Cl with bpcd = N,N'-bis(2-pyridylmethyl)-trans-1,2-diaminocyclohexane N,N'-diacetate) interacts more weakly with the protein in a different superficial cavity, without losing the coordinated water molecules.
The cationic enantiopure (R,R) and luminescent Eu(III) complex [Eu(bisoQcd)(H2O)2] OTf (with bisoQcd = N,N'-bis(2-isoquinolinmethyl)-trans-1,2-diaminocyclohexane N,N'-diacetate and OTf = triflate) was synthesized and characterized. At physiological pH, the 1:1 [Eu(bisoQcd)(H2O)2]+ species, possessing two water molecules in the inner coordination sphere, is largely dominant. The interaction with bovineserum albumin (BSA) was studied by means of several experimental techniques, such as luminescence spectroscopy, isothermal titration calorimetry (ITC), molecular docking (MD), and molecular dynamics simulations (MDS). In this direction, a ligand competition study was also performed by using three clinically established drugs (i.e., ibuprofen, warfarin, and digitoxin). The nature of this interaction is strongly affected by the type of the involved heteroaromatic antenna in the Eu(III) complexes. In fact, the presence of isoquinoline rings drives the corresponding complex toward the protein superficial area containing the tryptophan residue 134 (Trp134). As the main consequence, the metal center undergoes the loss of one water molecule upon interaction with the side chain of a glutamic acid residue. On the other hand, the similar complex containing pyridine rings ([Eu(bpcd)(H2O)2]Cl with bpcd = N,N'-bis(2-pyridylmethyl)-trans-1,2-diaminocyclohexane N,N'-diacetate) interacts more weakly with the protein in a different superficial cavity, without losing the coordinated water molecules.
The optical sensing
of biologically relevant species is often performed by lanthanide
(Ln(III)) derivatives, mainly Eu(III) and Tb(III) complexes[1−6] due to their peculiar properties, such as long Ln(III) luminescence
lifetime and the possibility to exploit the so-called antenna
effect. Thanks to the first peculiarity, one can use time-gated
detection to mitigate the interference of background fluorescence
originating from the biological sample and hence to isolate the Ln(III)
luminescence. This advantageous feature has been exploited, for example,
to obtain a high signal-to-noise (S/N) ratio by means of Eu(III)-based
probes in the detection of intracellular pH[7] as well as other important bioanalytes, such as bicarbonate,[8,9] citrate,[10] lactate,[11] ATP,[12,13] and vitamin C.[14] Based on the antenna effect, the luminescence
intensity of the metal ion can be considerably enhanced if the ligand
is capable of strongly absorbing and efficiently transferring the
UV excitation to the Ln(III) center. At the same time, high values
of the emission quantum yield are required. High emission intensity
is mandatory when emissive lanthanide complexes are used as tags in
bioassays or as optical probes.[6] In addition
to optimal emission properties, a luminescent Ln(III) complex must
interact selectively with a target bioanalyte in a complex matrix
containing competing species, such as proteins. Among the main proteins
in the biological fluids, serum albumin (SA), which represents 52%
of the protein composition in the circulatory system, has been broadly
studied in light of its very important physiological and pharmacological
functions.[15] For example, SA has a limited
number of binding sites with high specificity,[16] which play a crucial role in the transportation and delivery
of a variety of endogenous and exogenous species.[17]Humanserum albumin (HSA) and bovineserum albumin
(BSA) are the most extensively studied serum proteins. Changes of
the albumin levels in blood and urine could be related to several
disorders, including liver disease, neoplasia, nephrotic and diabetic
syndrome, and severe dehydration.[15] Serum
albumin can bind lanthanide complexes,[18−20] often leading to significant
changes of the Eu(III) and Tb(III) luminescence features,[21−26] as well as of the protein fluorescence.[27−31] Such a piece of evidence offers the possibility to
detect these proteins by means of optical spectroscopy techniques.
Furthermore, since strong changes in the fluorescence spectra of the
proteins are due to interactions close to the Trp residues, the regiochemistry
can often be evaluated. In this regard, there are marked similarities
between BSA and HSA in their composition and structure. In fact, although
HSA contains two extra amino acid residues (total 585) compared to
BSA, the carried-out protein sequence alignment (1AO6.pdb and 3V03.pdb
for HSA and BSA, respectively; Figure S1) pointed out about 76% amino acid sequence identity. Both proteins
consist of two identical chains, A and B, in turn subdivided into
three homologous evolutionarily related domains (I, II, III) (Figure S2). Each chain is predominantly in the
α-helix form (74%), but HSA has only one tryptophan residue
(Trp-214, buried within the secondary structure), while BSA contains
two, namely, Trp-213 (confined within a hydrophobic pocket of the
protein in the domain II) and Trp-134 (located at the outer surface
of the protein in the domain I).[32] Thus,
BSA can be used as a model for HSA, with the advantage of offering
two structural probes (Figure S3).Although the emission of BSA originates mainly from the two tryptophan
residues, tyrosine and phenylalanine side chains give a partial contribution
to the overall BSA fluorescence.[33] Therefore,
significant changes of the fluorescence intensity of the BSA protein
could be ascribed to interactions close to the aforementioned domains
(I and II), whereas small changes can be due to interactions occurring
in other protein sites, also near tyrosine and phenylalanine residues.
In addition, the fluorescence intensity is also sensitive to small
modifications of the local protein secondary structure.[34]In this work, after the synthesis and
physicochemical characterization of two cationic water-soluble Eu(III)
luminescent complexes, the interaction with BSA was studied by means
of several complementary experimental techniques (emission spectroscopy,
isothermal titration calorimetry) and biomolecular simulations to
obtain information on the affinity, specificity, and structural details
of the complex/protein adduct. The investigated complexes (Figure ) differ in the nature
of the heteroaromatic antenna (pyridine vs isoquinoline), thus being
labeled as [Eu(bpcd)(H2O)2]Cl and [Eu(bisoQcd)(H2O)2]OTf, respectively. In
both cases, the Eu(III) ion is 8-fold coordinated by one ligand molecule,
contributing with six donor atoms, and two water molecules. For sensing
purposes, these two molecules can be easily displaced by the target
analyte. Since the chirality plays an important role in the interaction
with biomolecules, the configuration of the two stereogenic carbon
atoms of the ligands was fixed (R,R stereochemistry)
so to study enantiopure complexes.
Figure 1
Molecular structure of the Eu(III) complexes
investigated here, where bpcd and bisoQcd stand for N,N′-bis(2-pyridylmethyl)-trans-1,2-diaminocyclohexane N,N′-diacetate and N,N′-bis(2-isoquinolinmethyl)-trans-1,2-diaminocyclohexane N,N′-diacetate, respectively. For the sake of clarity,
the type of counterion—Cl– in the case of
[Eu(bpcd)(H2O)2]+ and CF3SO3– in the case of [Eu(bisoQcd)(H2O)2]+—is omitted.
Molecular structure of the Eu(III) complexes
investigated here, where bpcd and bisoQcd stand for N,N′-bis(2-pyridylmethyl)-trans-1,2-diaminocyclohexaneN,N′-diacetate and N,N′-bis(2-isoquinolinmethyl)-trans-1,2-diaminocyclohexaneN,N′-diacetate, respectively. For the sake of clarity,
the type of counterion—Cl– in the case of
[Eu(bpcd)(H2O)2]+ and CF3SO3– in the case of [Eu(bisoQcd)(H2O)2]+—is omitted.The protocol for the synthesis of the new [Eu(bisoQcd)(n class="Chemical">H2O)2]CF3SO3 complex is reported in Figure .
Figure 2
Synthetic procedure for the new [Eu(bisoQcd)(H2O)2]CF3SO3 compound.
(a) Diisobutylaluminum hydride (DIBAL-H) 1 M in toluene 1.7 equiv,
−78 °C; (b) Isoquinoline-3-carbaldehyde ∼1.1 equiv,
absolute ethanol, room temperature, 12 h; (c) NaBH4 1.8
equiv, MeOH, room temperature, 5 h; (d) tert-butyl
bromoacetate 2.5 equiv, K2CO3 2.7 equiv, MeCN,
room temperature, 12 h; (e) HCl 6 M aq. 80 °C, 12 h; (f) Eu(CF3SO3)3 1 equiv, 2-propanol, room temperature,
12 h.
Synthetic procedure for the new [Eu(bisoQcd)(H2O)2]CF3SO3 compound.
(a) Diisobutylaluminum hydride (DIBAL-H) 1 M in toluene 1.7 equiv,
−78 °C; (b) Isoquinoline-3-carbaldehyde ∼1.1 equiv,
absolute ethanol, room temperature, 12 h; (c) NaBH4 1.8
equiv, MeOH, room temperature, 5 h; (d) tert-butyl
bromoacetate 2.5 equiv, K2CO3 2.7 equiv, MeCN,
room temperature, 12 h; (e) HCl 6 M aq. 80 °C, 12 h; (f) Eu(CF3SO3)3 1 equiv, 2-propanol, room temperature,
12 h.
Materials and Methods
All commercially available reagents were used as received from
suppliers. Solvents (Sigma-Aldrich) were dried when required using
an appropriate drying agent. Reactions requiring anhydrous conditions
were carried out using Schlenk-line techniques under an atmosphere
of dry argon. Water refers to high purity H2O obtained
from the “Millipore Elix 10” purification system. Eu(CF3SO3)3 (Aldrich, 98%) was stored under
vacuum for several days at 80 °C and then transferred to the
glovebox. All other chemicals were purchased from Alfa Aesar. Thin-layer
chromatography was carried out on neutral alumina plates (Fluka Analytical)
or silica plates (Sigma-Aldrich) and visualized under UV lamp (254
nm). The cationic exchange chromatography was performed on SCX cartridges
(1 g) purchased from “Agilent Technologies-Sample Prep solutions”.
4-Morpholinepropanesulfonic acid (MOPS) buffer (purity 99%) was dissolved
in 0.9% w/v NaClwater solution. The pH value was corrected to the
physiological value (7.4) by dropwise addition of freshly prepared
NaOH 10 M. Stock solution of BSA (purity ≥99%, purchased from
Sigma-Aldrich) was freshly prepared and used (2 × 10–4 mol L–1) by dissolving the protein in MOPS buffer.
The solution was kept in the dark at 4 °C before use.
Synthesis
The [Eu(n class="Chemical">bpcd)(H2O)2]Cl complex (Figure ) was synthesized
as reported in the literature.[35] Its analogue
[Eu(bisoQcd)(H2O)2](CF3SO3) (Figure ), bearing isoquinoline heteroaromatic pendants, instead
of pyridine ones, was obtained following the synthetic protocol reported
in Figure .
Isoquinoline-3-carbaldehyde
(2)
Under inert atmosphere, DIBAL-H 1 M in toluene
(54.5 mL, 55 mmol) was added dropwise to a stirred solution of the
commercially available methyl ester 1 (6 g, 32 mmol)
in anhydrous toluene (200 mL) at −78 °C. The mixture was
stirred at this temperature for 50 min and then allowed to reach 0
°C. Under argon flow, 1 M HCl (48 mL) was dropwise added and
the resulting suspension was filtered through a Celite pad. The filtrate
was diluted with water (350 mL) and extracted with ethyl acetate (3
× 350 mL). The combined organic phases were washed with saturated
aqueous NaCl solution, dried over Na2SO4, and
the solvents were evaporated in vacuo to give 3.44
g of a reddish solid, which was used in the next step without further
purification. Yield: 68%, purity: 80% (determined by 1HNMR technique). 1HNMR (CDCl3) δ (ppm)
7.78 [2H, t, J = 7.74 Hz]; 7.99 [1H, d, J = 7.74 Hz]; 8.05 [1H, d, J = 7.74 Hz]; 8.36 [1H,
s]; 9.35 [1H, s]; 10.25 [1H, -CHO]. 13CNMR (CDCl3): 121.78 (CH-Ar), 127.79 (CH-Ar), 128.62 (CH-Ar), 130.21 (CH-Ar),
130.52 (-C-Ar), 131.44 (CH-Ar), 135.24 (-C-Ar), 146.81 (-C-CHO), 153.25
(CH-N-CHO), 193.35 (CHO).
Amine 4 (0.844 mmol) was dissolved in a mixture of
anhydrous acetonitrile (13 mL) and anhydrous potassium carbonate (0.315
g, 2.28 mmol) under inert condition (argon). Then, a solution of tert-butyl 2-bromoacetate (0.312 mL, 2.11 mmol) in anhydrous
acetonitrile (5 mL) was added dropwise over 5 min. After stirring
over 12 h at room temperature, dichloromethane was added, and the
reaction mixture was washed with brine solution. The organic phase
was evaporated under reduced pressure to give 0.588 g of a yellowish
oil. The product was purified by chromatographic column on activated
neutral alumina (Al2O3) using a mixture of cyclohexane
(Cy) and ethyl acetate (AcOEt) for the elution of the product (Rf
= 0.35; Cy:AcOEt 7:3 to 1:9). In order to completely collect the product,
a mixture of AcOEt and methanol was exploited (AcOEt:MeOH 9:1). 380
mg of a yellowish solid were obtained. Yield = 72%. 1HNMR (CDCl3) δ (ppm) 9.04 (s, 1H), 8.10 (s, 1H), 7.98
(m, 1H), 7.88 (d, J = 7.39 Hz, 2H), 7.74 (m, 3H),
7.56 (m, 4H), 4.26 (m, 6H), 4.04 (m, 1H), 3.62 (m, 1H), 2.79 (m, 1H),
2.31 (m, 2H), 1.83 (m, 3H), 1.46 (s, 18H), 1.28–1.02 (m, 4H).
{[2-(Carboxymethyl-isoquinolin-3-ylmethylamino)-cyclohexyl]-isoquinolin-3-ylmethylamino}-acetic
acid (1R, 2R) (HbisoQcd, ligand 6 as an ammonium salt)
5 (crude, ∼5.15 mmol) was dissolved in HCl aq (6 M, 80 mL)
and stirred for 12 h at 80 °C. The volume of the reaction mixture
was halved under reduced pressure and the product was purified by
cationic exchange chromatography SCX (eluent: NH3 3 M in
MeOH) yielding 1.55 g of the desired product as a brownish solid.
Yield: 55%. 1HNMR (DMSO) δ ppm: 9.31–9.21
(m, 2H), 8.15–8.05 (m, 2H), 8.01–7.89 (m, 2H), 7.80–7.71
(m, 2H), 7.69–7.58 (m, 2H), 4.96–4.71 (m, 1H, CH2), 4.30–3.63 (m, 4H, CH2), 3.56–3.21
(m, 3H, CH2), 2.30–1.82 (m, 3H, Cy), 1.76–1.50
(m, 3H, Cy), 1.37–0.96 (m, 4H, Cy). UV–vis spectrophotometry
(methanol): ε(322 nm): 5174 M–1 cm–1. ESI-MS (Scan ES+; m/z): 573 (100%)
= [NaKHL]+; L = bisoQcd2–.The triflate of the cationic complex [Eu(bisoQcd)(H2O)2]+ (complex 7) was synthesized as follows. Ligand 6 (60 mg, 0.110
mmol) was dissolved in hot (55 °C) 2-propanol (4 mL). Upon cooling,
Eu(III)trifluoromethanesulfonate 98% (66 mg, 0.110 mmol) was added
portion-wise, and a yellowish suspension was formed. After neutralization
with KOH 2 M aq. (pH ∼7), the reaction mixture was stirred
at room temperature for 12 h. The suspension was centrifuged, the
filtrate was concentrated under reduced pressure, and the resulting
solid (105 mg) was purified by dissolution in methanol, followed by
precipitation in diethyl ether. Upon centrifugation, 28.6 mg of the
desired complex was collected as a beigeish solid. Yield: 32%. UV–vis
spectrophotometry: ε (323 nm): 4510 M–1 cm–1 (water); ε (323 nm): 7251 M–1 cm–1 (methanol). ESI-MS (Scan ES+; m/z) in methanol: 663 (100%); 661 (90%); ([Eu(bisoQcd)]+). 695 (32%); 693 (21%); ([Eu(bisoQcd)(CH3OH)]+). Elemental Anal.
Calcd for C31H30EuF3N4O7S·(H2O)2 (MW 847.6): C, 43.93;
H, 4.04; N, 6.61; O, 16.99; S, 3.78; found: C, 43.83; H, 3.97; N,
6.52; O,17.08; S, 3.88.
1H NMR Spectroscopy
Nuclear
magnetic resonance (NMR) experiments were performed at 298.15 K using
a 600 MHz Bruker Avance III spectrometer equipped with a triple resonance
TCI cryogenic probe. Spectra were usually recorded in CDCl3 and, unless otherwise stated, chemical shifts are expressed as ppm
and referenced to the internal standard tetramethylsilane (TMS). One-dimensional
NMR spectra were recorded with 32 scans and a spectral width of 12019
Hz. All spectra were manually phased and baseline corrected using
TOPSPIN 3.2 (Bruker, Karlsruhe, Germany). Chemical shift, multiplicity
(s, singlet; d, doublet; t, triplet; m, multiplet; b, broad), coupling
constants and integration area are reported.
ESI-MS
Electrospray
ionization mass spectra (ESI-MS) were recorded with a Finnigan LXQ
Linear Ion Trap (Thermo Scientific, San Jose, CA, USA) operating in
positive ion mode. The data acquisition was under the control of the
Xcalibur software (Thermo Scientific). A MeOH solution of sample was
properly diluted and injected into the ion source at a flow rate of
10 μL/min with the aid of a syringe pump. The typical source
conditions were: transfer line capillary at 275 °C; ion spray
voltage at 4.70 kV; sheath, auxiliary, and sweep gas (N2) flow rates at 10, 5, and 0 arbitrary units, respectively. Helium
was used as the collision damping gas in the ion trap set at a pressure
of 1 mTorr.
Elemental Analysis
Elemental analyses
were carried out by using an EACE 1110 CHNOS analyzer.
UV–vis
Spectrophotometry
Room temperature electronic spectra were
acquired by a Cary 60 UV–vis spectrophotometer, equipped with
a xenon lamp single source (80 Hz), Czerny–Turner monochromator,
and a photomultiplier (dual silicon diode detectors); scan rate: 300
nm/min in the 200–800 nm range.
Luminescence and Decay
Kinetics
Room temperature luminescence was recorded by a
Fluorolog 3 (Horiba-Jobin Yvon) spectrofluorometer, equipped with
a Xe lamp, a double excitation monochromator, a single emission monochromator
(mod. HR320), and a photomultiplier in photon counting mode for the
detection of the emitted signal. All the spectra were corrected for
the spectral distortions of the setup.In decay kinetic measurements
of Eu(III), a Xenon microsecond flashlamp was used and the signal
was recorded by means of a multichannel scaling method. True decay
times were obtained using the convolution of the instrumental response
function with an exponential function and the least-squares-sum-based
fitting program (SpectraSolve software package).The decay kinetics
of the protein fluorescence was measured at 298 K, using a Chronos
BH ISS Photon Counting instrument with picosecond laser excitation
at 280 nm operating at 50 MHz. Fluorescence decays were then globally
fitted with exponential functions using Glotaran ver. 1.5.1 software.[36]
Potentiometric and Spectrophotometric Titrations
Stock solutions of NaOH and HCl were prepared by diluting 1.0 M
standard solutions (Fluka Analytical) in ultrapure water (>18 MΩ·cm,
ELGA Purelab UHQ). The ionic strength of all solutions was adjusted
to 0.1 M with appropriate amounts of NaCl (Riedel-de Häen).
Stock solutions of Eu(III) (80 mM) were prepared by dissolving the
chloride salt (Sigma-Aldrich). The lanthanide content in the stock
solutions was determined by titration with EDTA and xylenol orange
as an indicator in acetate buffer.[37] Free
acid concentration in lanthanide solutions were checked by Gran’s
method.[38]Protonation constants of
the bisoQcd ligand was determined by acid–base
potentiometric titrations. The titration cell was maintained at constant
temperature (T = 298.2 ± 0.1 K) with a circulatory
bath and under an argon radial flux. The electromotive force (emf)
data were collected by using a computer-controlled potentiometer (Amel
Instruments, 338 pH Meter) connected to a combined glass electrode
(Metrohm Unitrode 6.0259.100). The electrode was calibrated before
each experiment by an acid–base titration with standard HCl
and NaOH solutions. The carbonate impurity in solution was checked
by the Gran’s method. Titrations were performed by adding NaOH
or HCl to ligand solutions (total ligand concentration, C°L = 0.72 mM) by a computer-controlled buret (Metrhom
Dosimat 765). At least 100 points were collected for each titration
which were afterward processed with the Hyperquad[39] program to calculate the protonation constants.The
formation constants for the Eu(III) complex were determined by spectrophotometric
UV–vis/pH titrations. Spectra of the solutions at variable
pH were collected with a Varian Cary 50 spectrophotometer equipped
with an optical fiber probe which was inserted in the titration cell
(optical path: 1 cm). The cell containing the ligand (C°L = 0.045 mM) and an equimolar quantity of Eu(III)
was titrated with NaOH and the pH corresponding to each spectrum was
measured as described above. Formation constants were calculated by
fitting the absorbance values at various wavelengths by using HypSpec[39] program.
DFT Calculations
The paramagnetic Eu(III) ion has been replaced by Y(III) which is
a suitable substitute.[8] Geometry optimizations
were carried out at DFT level in PCM[40] water
using the B3LYP[41,42] exchange–correlation functional.
The 6-31+G(d) basis set was used for the ligand atoms, while Y(III)
ion was described by the quasi-relativistic small core Stuttgart-Dresden
pseudopotential and the relative basis set.[43] All the final structures were checked to be minima by vibrational
analysis. ESP fitting charges were calculated by using the CHelpG
scheme.[44] All calculations were carried
out with Gaussian16.[45]
Fluorometric
Titrations
In the titration of the complexes, progressive
amounts of BSA (up to 180 μM for [n class="Chemical">Eu(bisoQcd)(H2O)2]OTf and up to 24 μM for [Eu(bpcd)(H2O)2]Cl]) were added to solutions containing the
complexes (80 μM). Physiological solutions were prepared MOPS
buffered (pH = 7.4) and as isotonic systems (0.9% w/v NaCl). After
each addition of BSA, UV–vis, fluorescence, and excitation
spectra as well as the Eu(III)-5D0 excited-state
lifetimes were recorded at 298 K.
Titration of BSA was carried
out at 298 K. Progressive amounts of [Eu(bisoQcd)(H2O)2]OTf or [Eu(bpcd)(H2O)2]Cl up to 200 μM were added to MOPS-buffered physiological
solution containing 5 μM of BSA. Integrated areas of BSA fluorescence
were analyzed using the MS-Excel cEST macro.[46] Model robustness was checked by statistical tests (Akaike information
criterion) implemented in the associated tool Solverstat.[47]Competitive fluorimetric titration experiments
were carried out involving warfarin (up to 20 μM, in the case
of [n class="Chemical">Eu(bpcd)(H2O)2]Cl and up to 100 μM
in the case of [Eu(bisoQcd)(H2O)2]OTf) in a MOPS-buffered solution containing BSA-complex adducts
(molar ratio [Eu(bpcd)(H2O)2]Cl: BSA = 4:1;
[Eu(bpcd)(H2O)2]Cl = 80 μM. Molar ratio
[Eu(bisoQcd)(H2O)2]OTf: BSA
= 1:1; [Eu(bisoQcd)(H2O)2]OTf
= 80 μM). After each addition of warfarin, Eu(III) luminescence
emission spectrum was recorded. Similar experiments were carried out
with ibuprofen (up to 0.4 mM) and digitoxin (up to 1 mM).
Isothermal
Titration Calorimetry
Titrations were performed using a TA
Instruments TAMIII thermostat equipped with a nanocalorimeter operating
at T = 298.15 K and with a stirring rate of 50 rpm.
The sample cell was filled with a solution (V = 0.7
mL) of 0.25 mM of BSA in MOPS buffer (pH 7.4). Reference cell was
filled with MOPS buffer. The titration syringe contained a solution
of the complex (1.5–3.0 mM) in MOPS buffer. In the case of
the [Eu(bisoQcd)(H2O)2]Cl complex, it was necessary
to add 10% v/v EtOH, due to the low solubility in pure water.The heats of dilution were estimated by using identical injections
of buffer solution into the protein. All calorimetric data were corrected
with the heat of dilution by subtracting the blank from the experiments.
At least two independent titration experiments were performed to confirm
consistency. Data analysis was performed using HypDeltaH.[39]
Molecular Docking
The Y(III) analogues
of the two Eu(III) complexes depicted in Figure were docked against the bovineserum albumin
crystal structure (PDB code: 4F5S) using the Autodock suite ver. 4.2.6.[48] Two flexible docking experiments for each complex against
two binding sites were performed. These were chosen in order to include
the two tryptophan residues of the structure. The flexible residues
were selected according to a cutoff of 6 Å for each tryptophan
residue: R194, L197, R198, S201, W213, N217, A341, V342, S343, D450,
L454 and E16, E17, F126, K127, A128, D129, E130, K132, F133, W134,
N158, N161, Q165 around W213 and W134, respectively. Since Autodock
suite does not include by default the Y(III) parameters in its force-field,
those were manually added to the parameter’s library. For each
Autodock run, a cluster analysis over 100 binding poses were performed.
Molecular Dynamics Simulations
From each docking cluster
analysis, a docked structure from the better cluster was chosen to
perform small molecular dynamics simulations. All MD simulations were
carried out using the GROMACS program, ver. 2016.5.[49] Since the Y(III) parameters are not included by default
in the most commonly used force-fields, they had to be included manually
into the force-field; Y(III) was treated as an ion. Therefore, the
parameters of each component of the docked structure was prepared
differently. The topology of the ligand molecule without Y(III) was
prepared using the ANTECHAMER suite,[50] and
the charges from the DFT calculations were included manually. The
protein was parametrized using the pdb2gmx from GROMACS with the AMBER99SB force-field.
Y(III) parameters were included manually in the force-field.[51] Water molecules and ions (0.154 M of Na+/Cl– to mimic physiological conditions)
were added to complete the system. The system was then equilibrated
through a complete workflow: steepest descents minimization of 5000
steps, NVT equilibration of 100 ps, NPT equilibration of 100 ps, and
MD production under the NPT ensemble for 100 ns at room temperature.
A pull code with 5000 kJ mol–1 nm–2 of force between the nitrogen, oxygen, and Y(III) atoms was included
in the MD production to keep the integrity of the complexes. All calculations
were performed within a GPU node available by the computational platform
from the “Centro Piattaforme Tecnologiche” of the University
of Verona.
Results and Discussion
Ligand Protonation and
Complex Formation
The best fit protonation constants for
the bisoQcd ligand (Figure S4) show the presence of four protonated species, as previously found
for the bpcd counterpart and the quinoline-containing analogue bQcd
(Table ).[8,35] The logK values for the bisoQcd
ligand suggest the presence of two moderately strong acidic sites
and two weakly acidic ones. The first protonation constant (logK1 = 9.22) can be assigned to a tertiary amine,
in agreement with those already reported.[52] The spectrophotometric acid–base titration (Figure S5) shows that molar absorbance is almost constant
in the 10.5–8.5 pH range and increases at lower pH with the
formation of bi- and triprotonated species. This indicates that both
isoquinoline moieties are protonated.[53] The last species can be associated with acetate protonation.[54]
Table 1
Protonation Constants
(logKj) for the bisoQcd
Ligand and Complex Formation Constants (logβj)a
equilibrium
bisoQcd
bpcd[35]
bQcd[8]
CDTA[55]
L+H⇆HL
9.27 ± 0.03
9.72
9.37
9.43
HL+H⇆H2L
5.86 ± 0.07
5.87
5.85
6.01
H2L + H⇆H3L
3.43 ± 0.07
2.94
3.46
3.68
H3L + H⇆H4L
1.62 ± 0.09
2.22
1.79
2.51
L+Eu⇆EuL
10.53 ± 0.04
11.19
9.97
19.6
L + Eu ⇆EuL(OH) + H
-
2.18
-
-
with Eu(III) at T = 298.2 K and μ = 0.1 M NaCl. Data for bpcd, bQcd (N,N′-bis(2-quinolinmethyl)-trans-1,2-diaminocyclohexane N,N′-diacetate), and CDTA (1,2-diaminocyclohexane-N,N,N′,N′-tetraacetic acid) are also reported.
Charges omitted for clarity.
with Eu(III) at T = 298.2 K and μ = 0.1 M n class="Chemical">NaCl. Data for bpcd, bQcd (N,N′-bis(2-quinolinmethyl)-trans-1,2-diaminocyclohexaneN,N′-diacetate), and CDTA (1,2-diaminocyclohexane-N,N,N′,N′-tetraacetic acid) are also reported.
Charges omitted for clarity.
The analysis of spectrophotometric data (Figures and S6) provides
a speciation model with only a 1:1 metal–ligand complex formed
([Eu(bisoQcd)(H2O)2]+). Based on the obtained complex formation constants, at physiological
pH = 7.4 the 1:1 species is largely dominant (>99% calculated for CEu = CbisoQcd =
10 μM, using the constants in Table ). The obtained stability is comparable to
that found previously for other complexes (Table ). The distinct binding strength of the three
moieties and the steric hindrance may account for the observed slight
differences. The higher stability of the [Eu(bisoQcd)(H2O)2]+ complex with respect
to the bQcd derivative is ascribable to the higher basicity of isoquinoline
compared to quinoline.[53] This can be deduced
from the comparison of the energies of the Yttrium counterparts, the
possible isomers[8] [Y(bisoQcd)(H2O)2]+ and [Y(bQcd)(H2O)2]+ shown in Figure . The isomers with bisoQcd
are more stable than the corresponding ones involving the bQcd ligand
by 6.8 and 8.9 kcal mol–1, respectively. This difference
seems related with the metal-Nhetero bonds which are clearly
shorter in [Y(bisoQcd)(H2O)2]+ (0.14 and 0.08 Å for the trans-O,O and trans-N,N isomers, respectively) and similar to those found in the (somewhat
more stable) complex with bpcd (Table S1). Also, in both cases, the trans-O,O isomer is the most stable (ΔG(trans-O,O-trans-N,N) = −3.0 and −5.1 kcal
mol–1 for the complex with bisoQcd and bQcd, respectively),
suggesting it as the prevalent form in solution.
Figure 3
UV–vis absorption
spectra changes during the acid–base titration (pH 2.4–11.7)
of the ligand bisoQcd (0.045 mM) in the presence
of equimolar Eu(III).
Figure 4
Minimum energy structures
of the [Y(L)(H2O)2]+ complexes (L
= bisoQcd, bQcd, bpcd). Hydrogens bonded to the C
atoms are omitted for clarity.
UV–vis absorption
spectra changes during the acid–base titration (pH 2.4–11.7)
of the ligand bisoQcd (0.045 mM) in the presence
of equimolar Eu(III).Minimum energy structures
of the [Y(L)(H2O)2]+ complexes (L
= n class="Chemical">bisoQcd, bQcd, bpcd). Hydrogens bonded to the C
atoms are omitted for clarity.
Luminescence
Upon titration of the Eu(III) complexes with
increasing amount of BSA, we observed two opposite trends. In the
case of [Eu(bpcd)(H2O)2]Cl, a gradual decrease
of the Eu(III) luminescence intensity was detected (Figure a). Conversely, an enhancement
of the lanthanide emission was observed for the complex [Eu(bisoQcd)(H2O)2]OTf (Figure b).
Figure 5
Evolution of the Eu(III)
luminescence emission of (a) [Eu(bpcd)(H2O)2]Cl complex (80 μM) upon addition of BSA in the 0–24
μM concentration range and (b) [Eu(bisoQcd)(H2O)2]OTf complex (80 μM) upon addition of
BSA in the 0–180 μM concentration range, at 298 K.
Evolution of the Eu(III)
luminescence emission of (a) [n class="Chemical">Eu(bpcd)(H2O)2]Cl complex (80 μM) upon addition of BSA in the 0–24
μM concentration range and (b) [Eu(bisoQcd)(H2O)2]OTf complex (80 μM) upon addition of
BSA in the 0–180 μM concentration range, at 298 K.
The spectral fingerprint of the hypersensitive 5D0 → 7F4 transition
is particularly affected by the addition of BSA. This behavior suggests
a change in the nature of the primary donors to the Eu(III) center,[56] as the oxygen atom of a water molecule can be
displaced by a functional group of the protein, as discussed later
in the paper.Based on the overlap between the electronic spectra
of BSA and the [Eu(bpcd)(H2O)2]Cl complex in
the range 260–290 nm, luminescence spectra of the latter cannot
be recorded upon excitation in the indicated wavelength domain at
a BSA concentration >40 μM (final experimental BSA–complex
molar ratio of around 1:3). This is a conditio sine qua non for respecting the limits of validity of the Lambert–Beer
law (Abs over 3 units). On the contrary, the concentration limit of
BSA was extended to 180 μM (2.25:1 BSA–complex molar
ratio) for the [Eu(bisoQcd)(H2O)2]OTf derivative.To gain further insights into the interaction,
the luminescence decay of the 5D0 excited state
was recorded. Figure shows the collected profiles for the complex involving bisoQcd as a ligand at different protein concentrations.
Under the same experimental conditions, the compound [Eu(bpcd)(H2O)2]Cl showed no
significant change in the observed lifetime (ca. 0.30
ms).
Figure 6
Luminescence decay curves of the 5D0 excited
state of Eu(III) for the complex [Eu(bisoQcd)(H2O)2]OTf complex (80 μM) upon addition of
BSA.
Luminescence decay curves of the 5D0 excited
state of Eu(III) for the complex [n class="Chemical">Eu(bisoQcd)(H2O)2]OTf complex (80 μM) upon addition of
BSA.
The blue and green decay curves
cannot be fitted by a single exponential function when BSA and the
complex are both present in solution, likely due to the presence of
more than one emitting species (complex/protein adducts) in solution.
In such cases, the values of the 1/e folding time is given instead
of the observed lifetime. The increase of the 5D0 excited state lifetime upon addition of the protein [0.28 ms for
the free complex, 0.34 and 0.50 ms after the addition of BSA (24 μM
and 180 μM, respectively)] can be attributed to a lower efficiency
of the multiphonon relaxation process (i.e., process able to quench
the excited state of the lanthanide ion in a nonradiative way).[57,58] In fact, in the binding site some functional groups of the protein
may replace water molecules in the inner coordination sphere of the
metal ion. In this regard, literature data confirm that Ln(III) complexes
wherein the metal center is coordinated by two water molecules (as
in our case) are susceptible to ligand displacement by competitive
binding to endogenous serum anions, such as carbonate, or protein
carboxylic acid residues.[59] Based on these
considerations, the Eu(III) luminescence intensity increases, as well
as the quantum yield. On the contrary, the protein/complex interaction
seems not to affect the number of water molecules bound to the metal
ion in the [Eu(bpcd)(H2O)2]Cl complex. The decrease
of the Eu(III) emission intensity could be in part due to the Inner
Filter Effect (IFE).[60] IFE is an alternative
signal transduction mechanism that relies on the reduction of a fluorophore’s
emission, caused by preventing its excitation by absorbing light at
its excitation wavelength by other chromophores: in the case of [Eu(bpcd)(H2O)2]Cl complex, the excitation wavelength of the
complex (around 270 nm) is partially absorbed by BSA, which presents
an absorption maximun around 280 nm. On the other hand, the aforementioned
decrease of the Eu(III) emission intensity could be also connected
to a less efficient ligand-to-metal energy transfer. In this regard,
generally the interaction with BSA involves the tryptophan residues
in domains I and II (Trp-134 and Trp-213; Figure S3),[61] which could bind the metal
ion instead of the antenna. Despite this observation, the excitation
spectrum of [Eu(bpcd)(H2O)2]Cl shows the presence
of a peak around 265 nm which undergoes a blue-shift toward 262 nm
upon addition of the protein (Figure S7a). This peak is indicative of the luminescence sensitization of Eu(III)
by pyridine rings; thus, we can rule out the involvement of the tryptophan
rings in the sensitization mechanism, as their typical excitation
peak around 280 nm is absent. Instead, the aforementioned blue-shift
could be due to a change of the energy of the electronic levels of
the pyridine antenna, thus being detrimental to the efficiency of
the energy transfer.The unusual behavior of the [Eu(bpcd)(H2O)2]Cl complex points out a different nature of
the protein/complex interaction, which should primarily involve the
organic ligand rather than the metal ion. Vice versa, the involvement of the Eu(III) coordination sphere of the [Eu(bisoQcd)(H2O)2]+ complex
in the interaction with the protein was also confirmed by the change
in the asymmetry ratio value[62]indicative of the degree of asymmetry of the
coordination polyhedron around the Eu(III) ion, which passes from
3.80 at the beginning of the titration to 4.20 at the end. In agreement
with previous considerations, the R value remains
basically constant (around 1.55) during BSA additions for the [Eu(bpcd)(H2O)2]Cl complex. Moreover, the recorded excitation
spectra for [Eu(bisoQcd)(H2O)2]OTf (Figure S7b) reveal no or negligible
energy transfer mechanisms involving chromophoric protein groups (i.e.,
no excitation peak around 280 nm in the spectrum).In order
to gain more insights into the protein/complex interaction mechanism,
we also investigated the evolution of the protein fluorescence upon
addition of the Eu(III) complex. In this case, the limits of validity
of the Lambert–Beer law cover both a wider complex concentration
range (up to 200 μM) and a larger complex/protein molar ratio
(up to 40:1). In both cases, we observed a decrease of the fluorescence
intensity, which is particularly clear for the derivative with bisoQcd as a ligand (Figure ).
Figure 7
Evolution of the fluorescence spectrum of BSA (5 μM
solution) upon addition of (a) [Eu(bpcd)(H2O)2]Cl and (b) [Eu(bisoQcd)(H2O)2]OTf. On the right, the integrated area of each spectrum (○)
vs total complex concentration together with the fit (line) obtained
with the formation constants in Table .
Evolution of the fluorescence spectrum of BSA (5 μM
solution) upon addition of (a) [Eu(bpcd)(H2O)2]Cl and (b) [Eu(bisoQcd)(H2O)2]OTf. On the right, the integrated area of each spectrum (○)
vs total complex concentration together with the fit (line) obtained
with the formation constants in Table .
Table 2
Formation Constants
for the Complex/BSA Adducts Obtained from Fluorimetric and ITC Titrations
L =
reaction
logK Fluorimetry
logK ITC
ΔH (kJ mol–1)
bpcd
BSA + EuL
⇋ BSA[EuL]
3.7 ± 0.6
3.61 ± 0.07
–13.1 ± 0.1
bisoQcd
BSA + EuL ⇋ BSA[EuL]
3.9 ± 0.2
-
–16 ± 3
BSA[EuL] + EuL ⇋ BSA[EuL]2
3.6 ± 0.4
-
–32 ± 4
In addition, the maximum
emission peak of the protein (around 335 nm) undergoes a 10 nm red-shift.
Therefore, the corresponding transition (π* → π)
occurs in a locally more polar medium. In other words, the BSA binding
to the [Eu(bisoQcd)(H2O)2]OTf
complex leads to a protein conformational change, in turn decreasing
the rigidity of the Trp environment and/or exposing such an amino
acid residue to a more hydrophilic environment.[63] Since upon excitation around 280 nm we mainly excite Trp
side chains and to a lesser extent the tyrosine residues,[33] the significant change of the fluorescence intensity
of the protein is indicative of an interaction taking place close
to the Trp residues discussed above. On the contrary, the small change
of fluorescence intensity detected for [Eu(bpcd)(H2O)2]+ predicts an interaction located in a different
protein site.The fluorescence decrease by our complexes can
result from a variety of phenomena, such as collisional (or dynamic)
quenching and static quenching.[64] Regarding
the former (a bimolecular process), upon contact of BSA with some
molecule in solution (e.g., the Eu(III) complex) via an inelastic
collision, the fluorophore reaches its excited state, then deactivated
by heat release. Conversely, in the static case the fluorophore can
form nonfluorescent adducts with the quencher. In order to discriminate
between static or dynamic quenching, we measured the lifetime of the
protein excited state. The fluorescence decay of BSA was best fitted
with a biexponential function, and the corresponding averaged lifetimes, ⟨τav⟩, remained unaltered upon addition of both complexes
(around 7.5 ns). This indicated that the quenching of the fluorescence
follows a static mechanism and a ground-state complex between BSA
and each Eu(III) complex should be present in solution.[64]The fluorescence data were analyzed by
the well-known Stern–Volmer plot.[65] As shown in Figure S8, a linear correlation
of the fluorescence intensities F0/F with the concentration is undoubtedly observed only in
the case of [Eu(bpcd)(H2O)2]Cl complex. The
determined Stern–Volmer constant Ksv of this compound is 2089 M–1. The analysis of
BSA emission data, by means of the program MS-Excel cEST macro, provided
best-fitting models (Figure , right) which correspond to the formation of a 1:1 adduct
for the [Eu(bpcd)(H2O)2]Cl complex (Figure a) and of 1:1 + 1:2
species for the original complex [Eu(bisoQcd)(H2O)2]+ (Figure b). The obtained adduct formation equilibrium constants (logK) are reported in Table . Interestingly, the LogKsv value reported above for the [Eu(bpcd)(H2O)2]Cl complex is in good agreement with the formation
constants for the complex/BSA adduct reported in Table (LogKsv = 3.32 ± 0.02; LogK = 3.7 ± 0.6).
As expected for the static quenching regime,[64] the Stern–Volmer quenching constant is identified with the
adduct association constant.
Isothermal Titration Calorimetry
As initially different models provided a reasonable fit of the fluorimetric
data and these data could be affected by the inner filter effect (IFE),
the BSA–complex interaction was also studied by a different
experimental technique such as isothermal titration calorimetry (ITC).
For the [Eu(bpcd)(H2O)2]Cl (Figure a) a 1:1 model well fits the
heat data, resulting in logK = 3.61 and a negative
formation enthalpy (ΔH) (Table ). This value of logK agrees
with the constant obtained from luminescence data (Figure a), where a small change in
the intensity of the protein fluorescence was observed upon titration
with the complex. This result suggests that IFE does not affect dramatically
the protein fluorescence in the presence of [Eu(bpcd)(H2O)2]Cl. For the [Eu(bisoQcd)(H2O)2]+ complex, ITC data (Figure b) support the presence of 1:1 + 1:2 protein–complex
adducts, established by a stronger interaction compared to the other
derivative. When both logK and ΔH were set as free parameters in ITC data fitting, very large errors
were obtained; hence, the values are not reported in Table .
Figure 8
Calorimetric titrations
of (a) BSA (0.25 mM) with [Eu(bpcd)(H2O)2]Cl
(1.5 mM). Solvent: aqueous solution of MOPS, 13 mM; pH = 7.4. Final
Eu/BSA molar ratio = 2.14. (b) BSA (0.25 mM) with [Eu(bisoQcd)(H2O)2]OTf (3 mM). Solvent: aqueous solution of MOPS
13 mM with EtOH 10% v/v; pH = 7.4. Final Eu/BSA molar ratio: 4.8.
On the right, the experimental (○) and calculated (line) Qcum (cumulative heat exchanged/total moles of
added reactant) vs complex/BSA molar ratio.
Calorimetric titrations
of (a) BSA (0.25 mM) with [n class="Chemical">Eu(bpcd)(H2O)2]Cl
(1.5 mM). Solvent: aqueous solution of MOPS, 13 mM; pH = 7.4. Final
Eu/BSA molar ratio = 2.14. (b) BSA (0.25 mM) with [Eu(bisoQcd)(H2O)2]OTf (3 mM). Solvent: aqueous solution of MOPS
13 mM with EtOH 10% v/v; pH = 7.4. Final Eu/BSA molar ratio: 4.8.
On the right, the experimental (○) and calculated (line) Qcum (cumulative heat exchanged/total moles of
added reactant) vs complex/BSA molar ratio.
Ligand Competition Studies
To identify the BSA sites involved
in the interaction with the Eu(III) complexes, fluorimetric titrations
using site-selective competitive ligands (the clinically established
drugs ibuprofen, warfarin, and digitoxin)[66−68] were carried
out. Warfarin is selective for the external site (domain I) where
Trp-134 residue is present, while ibuprofen for the domain II, associated
with the inner Trp-213 residue (Figure S2). Digitoxin shows a selective interaction with the domain III, not
fluorescent, and with which our complexes seem not to interact.[69]Upon addition of warfarin to the solution
containing the BSA/[Eu(bpcd)(H2O)2]Cl adduct,
a decrease of the Eu(III) luminescence intensity within the experimental
error was detected. Since the BSA–warfarin adduct is associated
with a logK1 = 5.07,[70] higher than the one calculated for the BSA/[Eu(bpcd)(H2O)2]+, there is no competition between
warfarin and such a complex for the domain I. Likewise, the [Eu(bpcd)(H2O)2]Cl complex does not interact with the domain
II, as the Eu(III) luminescence intensity does not change upon addition
of ibuprofen to the BSA/complex adduct. On the contrary, the addition
of warfarin to the BSA adduct(s) with [Eu(bisoQcd)(H2O)]
resulted in a significant decrease (around 85%) of the Eu(III) luminescence
intensity (Figure ).
Figure 9
Luminescence of the complex [Eu(bisoQcd)(H2O)2](OTf) (80 μM) interacting with BSA (80 μM)
upon titration with warfarin (up to 100 μM); room temperature;
solvent: aqueous solution of MOPS, 13 mM; pH = 7.4.
Luminescence of the complex [Eu(bisoQcd)(n class="Chemical">H2O)2](OTf) (80 μM) interacting with BSA (80 μM)
upon titration with warfarin (up to 100 μM); room temperature;
solvent: aqueous solution of MOPS, 13 mM; pH = 7.4.
This behavior, opposite the one highlighted in Figure b, points out the Eu(III) complex
replacement by warfarin at site I (Trp 134). However, both fluorimetric
and calorimetric titrations suggest that [Eu(bisoQcd)(H2O)2]OTf can interact with BSA in an additional position.
Since the Eu(III) luminescence intensity does not change for this
compound upon addition of both ibuprofen and digitoxin, the second
interaction site is different from those of the two here studied drugs.In the case of warfarin and ibuprofen, it was checked that each
drug interacts with the protein by monitoring, upon titration, the
BSA fluorescence stemming from the adduct with the complexes. The
addition of these drugs results in a significant decrease of the protein
fluorescence intensity. In order to better understand the nature of
the protein/complex interactions, molecular docking and molecular
dynamics simulations were performed.
[Y(bpcd)(H2O)2]+ Complex
When the computationally equivalent
[Y(bpcd)(H2O)2]+ complex is docked
close to the sites I and II (associated with the presence of Trp134
and Trp213, respectively), it does not remain in these binding sites.
It explores all the protein surfaces after the first nanoseconds of
simulation. Then, [Y(bpcd)(H2O)2]+ interacts with a superficial cavity where it spends half the simulation
time (50 ns) (Figures and S9).
Figure 10
(a) BSA superficial
interaction site with the [Y(bpcd)(H2O)2]+ complex. The electrostatic potential is represented (electronegative
cavities are red colored) (left) as well as the distance between the
interacting complex and the buried Trp 213 (right). (b) Close-up on
the [Y(bpcd) (H2O)2]+ that lies on
the superficial cavity and representation of the amino acid residues
surrounding the complex (distances averaged along the simulation).
(a) BSA superficial
interaction site with the [Y(bpcd)(H2O)2]+ complex. The electrostatic potential is represented (electronegative
cavities are red colored) (left) as well as the distance between the
interacting complex and the buried Trp 213 (right). (b) Close-up on
the [Y(bpcd) (H2O)2]+ that lies on
the superficial cavity and representation of the amino acid residues
surrounding the complex (distances averaged along the simulation).The amino acid residues located at the external
surface of this cavity and therefore likely involved in the interaction
with the pyridine-based complex consist of several groups arising
from four residues of phenylalanine (F227, F308, F325, and F329) and
two residues of tyrosine (Y318 and Y331). In this superficial area
also, five negatively charged carboxylic groups are present [from
three aspartic acids (D307, D311, D313) and two glutamic acids (E320,
E332); Figureb].
This piece of evidence is in line with the possible interactions that
[Y(bpcd)(H2O)2]+ can establish with
the protein. In particular, the positive charge of the complex can
give rise to a Coulombic interaction with the negatively charged aspartic
and glutamic acid side chains. The pyridine rings of the ligand can
interact by means of van der Waals contacts with the side groups of
aromatic amino acids listed above. As mentioned in the Introduction, since such amino acids (phenylalanine and tyrosine)
contribute to the protein fluorescence to a small extent, their involvement
in the interaction with the complex [Eu(bpcd)(H2O)2]+ could affect only marginally the fluorescence
spectrum of BSA (Figure a).It is worth noting that upon interaction the metal ion
does not lose the bound water molecules (two), as shown in the Figure S10a, where the graphical representation
of the radial distribution function is reported, as a function of
the O(water)–Y distance. In fact, the number of water molecules
in the inner coordination sphere of the metal ion (at 2.6 Å)
is around two, both in the simulation in bulk water and upon interaction
with the protein. This is in good agreement with the analysis of the
Eu(III) luminescence decay curves discussed in the previous section.
[Y(bisoQcd)(H2O)2]+ Complex
[Y(bisoQcd)(H2O)2]+ shows a selective interaction with the outer binding site containing
the Trp residue 134, as it remains in this protein superficial area
through all the simulation time (100 ns). On the contrary, no interaction
occurs with the buried Trp213, as in the case of the [Y(bpcd)(H2O)2]+ derivative. From the thermodynamic
point of view, based on the binding energy analysis obtained from
docking (Figure S11), this inner site is
not suitable for both studied complexes.If we focus on the
superficial binding site, the distance between Y(III) and Trp134 was
constant (around 6.8 Å) over all simulation time (Figure S12). In particular, we noticed the presence
of a “non-conventional” hydrogen bond[71] involving the aromatic ring of Trp 134 as H-bond acceptor
and a C–H bond of the isoquinoline ring as donor (Figure S13). The phenomenon of the “CH/π
interaction” in organic and biological chemistry has been explored
and reviewed by Nishio et al. in a very interesting way.[72]These results are in perfect agreement
with the outcomes associated with the analysis of the BSA fluorescence
upon interaction with the complex and the competitive titration experiments
with the drug warfarin. In addition, one coordinated water molecule
is displaced by one monodentate carboxylic group of the glutamic acid
residue 17 (E17) (Figure ).
Figure 11
Snapshot of the interaction site of BSA with the [Y(bisoQcd)(H2O)]+ complex.
Snapshot of the interaction site of BSA with the [Y(n class="Chemical">bisoQcd)(H2O)]+ complex.
In addition, this finding is in agreement with the increase
of the observed luminescence lifetime of Eu(III) during the titration
of [Eu(bisoQcd)(H2O)2]+ complex with
the protein (Figure ). In fact, the removal of one water molecule from the inner coordination
sphere of Eu(III) reduces the multiphonon relaxation process. A radial
distribution analysis (Figure S10b) confirmed
that, while in bulk water the metal ion has two water molecules in
its coordination sphere (at a distance of ∼2.5 Å), when
the complex is docked into the binding site close to Trp134, the ion
just retains one water molecule. Interestingly, an inspection of the
Y coordination environment for both complexes revealed that the bond
distances between the metal ion and the donor atoms of the ligands
are in practice unaffected by the interaction with protein (Figures S14 and S15). Focusing on the complex
geometry, only small differences in the orientation of the heteroaromatic
fragments are noticed for [Y(bisoQcd)(H2O)]+ upon interaction with BSA (Figure S16). In contrast, a significant change in the orientation
of the pyridine rings was detected in the case of the [Y(bpcd)(H2O)2] + complex. In this case, the lone
pair of one pyridinenitrogen is not pointing precisely toward the
metal ion (see Figure S17 for details).To sum up, molecular docking calculations led to results in agreement
with those achieved via spectroscopy. In fact, on one hand the interaction
of the [Y(bisoQcd)(H2O)2]+ complex with the protein mainly affects the environment of
the metal ion (i.e., displacement of a water molecule by E17, acting
as a monodentate O-donor ligand). On the other hand,
the coordination sphere of [Y(bpcd)(H2O)2]+ remains the same before and after the interaction with the
metal center playing no key role. The interaction is instead mediated
by the ligand scaffold, establishing various interactions with the
model protein based on different topological (morphological and chemical)
complementarities.At this stage, it is useful to recall the
spin selection rules underlying the energy exchange mechanism.[73] The efficiency of this process—governing
a nonradiative energy transfer and involving the triplet state of
a ligand and the excited states of lanthanide ions—is optimal
if (i) the energy overlap of the absorption band of the donor (D)
and the emission band of the acceptor (A) is high; (ii) the D–A
distance is small; and (iii) the orientation of the orbitals involved
in the mechanism is such that their overlap is good.[73] Since the orbitals of the pyridine rings should be involved
in such a mechanism, the observed change in their orientation upon
protein interaction could worsen the orbital overlap discussed at
the point (iii) and, in turn, the efficiency of the exchange mechanism.
This conclusion is also supported by spectroscopy: apart from the
IFE, the deterioration of the ligand-to-metal energy transfer efficiency
could contribute to the decrease of the luminescence emission intensity
of the [Eu(bpcd)(H2O)2]Cl complex during the
titration with BSA (Figure a).
Conclusions
The new [Eu(bisoQcd)(H2O)2]+ complex
was synthesized, in-depth characterized, and its solution behavior
investigated. The stability is slightly higher than that of the previously
studied [Eu(bQcd)(H2O)2]+ counterpart,
due to the larger basicity of the isoquinoline compared to quinoline.
The speciation showed that the EuL complex is the only species present
at physiological pH, thus making it a good candidate for luminescent
sensing of bioanalytes.The interaction of [Eu(bisoQcd)(H2O)2]+ and [Eu(bpcd)(H2O)2]+ with BSA, by us conceived as a
potential competitor, was studied by ITC and by analysis of the lanthanide
and protein emission spectra. Experimental data revealed a markedly
different behavior of the two complexes. [Eu(bpcd)(H2O)2]+ can form only a 1:1 adduct on an external pocket
of the protein as suggested by MD with no involvement of the specific
sites of three drugs explored here via competitive titrations. The
luminescence decay remains unchanged when the complex interacts with
the protein, thus indicating a mere structural role for the metal
center (M). The M–L bonds proved strong enough to keep the
pharmacophore-like scaffold in fixed positions, thus pointing to specific
amino acid residues. On the contrary, [Eu(bisoQcd)(H2O)2]+ directly involves the Eu(III)
ion during the interaction with the protein by coordination to a glutamate
side chain (E17) in parallel with the loss of one water molecule in
the first coordination sphere, thus increasing the luminescence lifetime.
It can establish two types of adduct, namely, with 1:1 and 1:2 protein/complex
stoichiometry. At least one occurs in the Trp 134 region (protein
domain I), as highlighted by the warfarin displacement.It is
worth highlighting that the indications obtained could be exploited
in the development of Gd(III)-based blood-pool magnetic resonance
imaging (MRI) contrast agents. Indeed, similarly to the two Eu(III)
complexes studied here, Gd(III) analogues should retain at least one
water molecule upon interaction with the protein and, at the same
time, take advantage of the relaxivity increase due to the adduct
formation with the protein.[74]Finally,
this work paves the way to future studies aimed at designing and developing
new molecular luminescent chiral probes wherein the nature and the
scaffold size of the multidentate ligand as well as the stability
of the M–L bonds play a role of paramount importance to enable
or reduce the accessibility to the Ln(III) center.
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