BACKGROUND: Breast cancer (BC) is the most commonly diagnosed cancer in women. Tumor recurrence and metastasis are the key causes of death in BC patients. Long non-coding RNA (lncRNA) is closely associated with BC progression. lncRNA nuclear-enriched abundant transcript (NEAT)1 has been reported to regulate the proliferation and mobility of several types of cancer cells. However, how lncRNA NEAT1 affects the proliferation and invasion of BC cells is not known. METHODS: Quantitative real time-polymerase chain reaction (qRT-PCR) was used to measure expression of lncRNA NEAT1 and microRNA (miR)-146b-5p in BC tissues and cell lines. Cell Counting Kit (CCK)-8, cell colony-formation, wound-healing, and Transwell™ assays were undertaken to determine the effects of lncRNA NEAT1 and miR-146b-5p on progression of BC cells. The interaction between lncRNA NEAT1 and miR-146b-5p was examined by luciferase reporter, RNA-binding protein immunoprecipitation (RIP), and RNA-pulldown assays. RESULTS: Expression of lncRNA NEAT1 was upregulated in BC tissues and cell lines. High expression of lncRNA NEAT1 predicted poor overall survival in BC patients. Silencing of expression of lncRNA NEAT1 inhibited epithelial-mesenchymal transition (EMT) and suppressed the proliferation, migration and invasion of BC cells. Ectopic expression of lncRNA NEAT1 induced EMT and promoted BC progression. Mechanistic investigations revealed that miR-146b-5p was a direct target of lncRNA NEAT1, and its expression was correlated negatively with expression of lncRNA NEAT1 in BC tissues. CONCLUSION: lncRNA NEAT1 could (i) serve as a novel prognostic marker for BC and (ii) be a potential therapeutic target for BC.
BACKGROUND: Breast cancer (BC) is the most commonly diagnosed cancer in women. Tumor recurrence and metastasis are the key causes of death in BC patients. Long non-coding RNA (lncRNA) is closely associated with BC progression. lncRNA nuclear-enriched abundant transcript (NEAT)1 has been reported to regulate the proliferation and mobility of several types of cancer cells. However, how lncRNA NEAT1 affects the proliferation and invasion of BC cells is not known. METHODS: Quantitative real time-polymerase chain reaction (qRT-PCR) was used to measure expression of lncRNA NEAT1 and microRNA (miR)-146b-5p in BC tissues and cell lines. Cell Counting Kit (CCK)-8, cell colony-formation, wound-healing, and Transwell™ assays were undertaken to determine the effects of lncRNA NEAT1 and miR-146b-5p on progression of BC cells. The interaction between lncRNA NEAT1 and miR-146b-5p was examined by luciferase reporter, RNA-binding protein immunoprecipitation (RIP), and RNA-pulldown assays. RESULTS: Expression of lncRNA NEAT1 was upregulated in BC tissues and cell lines. High expression of lncRNA NEAT1 predicted poor overall survival in BC patients. Silencing of expression of lncRNA NEAT1 inhibited epithelial-mesenchymal transition (EMT) and suppressed the proliferation, migration and invasion of BC cells. Ectopic expression of lncRNA NEAT1 induced EMT and promoted BC progression. Mechanistic investigations revealed that miR-146b-5p was a direct target of lncRNA NEAT1, and its expression was correlated negatively with expression of lncRNA NEAT1 in BC tissues. CONCLUSION: lncRNA NEAT1 could (i) serve as a novel prognostic marker for BC and (ii) be a potential therapeutic target for BC.
Breast cancer (BC) is a leading cause of cancer-related death worldwide.1 Resection, radiotherapy, chemotherapy and targeted therapy are the common treatment strategies for BC.1,2 However, most patients obtain only modest survival benefits and die from tumor recurrence and distant metastasis.3–5 Therefore, understanding the mechanisms of the growth and metastasis of BC cells and identifying more efficacious therapeutic targets is extremely important.Long non-coding RNAs (lncRNAs) are RNAs of length >200 nt incapable of coding proteins.6,7 Studies have revealed that multiple lncRNAs are dysregulated in many types of cancers, and that lncRNAs are closely associated with the diagnosis and prognosis in cancer patients,8–12 including BC.7,13,14 lncRNAs have been implicated in the regulation of various cancer hallmarks, including proliferation, metastasis, apoptosis, and chemoresistance.6,12,15lncRNA LOXL1-AS1 has been reported to promote the invasion and metastasis of BC cells by antagonizing the expression and activity of microRNA (miR)-708-5p.16 LINC02273 can epigenetically increase the transcription of AGR2 and lead to metastasis of BC cells.17 In addition, nuclear-enriched abundant transcript (NEAT)1 is a nuclear-restricted lncRNA and is a critical architectural part of gene paraspeckles.18 lncRNA NEAT1 can promote the growth and metastasis of tumor cells in several types of cancers, such as colorectal cancer,19 pancreatic cancer,20 and hepatocellular carcinoma.21 lncRNA NEAT1 has been reported to regulate the growth and mobility of BC cells by targeting CBX7 and RTCB.22 Also, lncRNA NEAT1 confers chemoresistance and cell “stemness” in triple-negative breast cancer (TNBC) cells.23 Epithelial–mesenchymal transition (EMT) is a key inducer of tumor metastasis,24 but the effect of lncRNA NEAT1 on EMT in BC cells is not known.We explored the role of lncRNA NEAT1 in BC progression. We found that overexpression of lncRNA NEAT1 was associated with reduced overall survival in BC patients. Moreover, lncRNA NEAT1 induced EMT and promoted the proliferation, migration and invasion of BC cells by inhibiting miR-146b-5p expression.
Materials and Methods
Ethical Approval of the Study Protocol
The study protocol was approved by the Ethics Review Board of Guangzhou Panyu Central Hospital (FR-EE-2017415) in Guangzhou, China. Patients provided written informed consent. Our study was conducted in accordance with the Declaration of Helsinki 1975 and its subsequent amendments.
Clinical Specimens
Human BC tissues (n = 56) and adjacent non-tumor tissues (n = 56) were obtained from patients undergoing surgery at Guangzhou Panyu Central Hospital. Before surgery, no patient received chemotherapy or radiotherapy. Tissues were stored in liquid nitrogen and were confirmed by pathologic examination. Information regarding age, premenopausal status, postmenopausal status, treatment or BC subtype of enrolled BC patients is summarized in Table 1.
Table 1
Patients’ Information
Factors
Number of Cases
Age
<50
26
≥50
30
Pre- or postmenopausal status
Pre-
17
Post-
39
Treatment
Surgery
56
Other treatment
0
ER status
Positive
29
Negative
27
PR status
Positive
25
Negative
31
HER2 status
Positive
21
Negative
35
Patients’ Information
Cells and Cell Culture
Human normal breast cells (MCF10A) and human BC cell lines (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3) were purchased from the Cell Bank of Type Culture Collection of Chinese Academy of Sciences (Shanghai, P.R. China). Cells were cultured in Dulbecco’s modified Eagle’s medium supplemented with 10% fetal bovine serum and 1% penicillin–streptomycin, and maintained in a humidified atmosphere of 5% CO2 at 37°C.
Total RNA from BC tissues and cell lines was extracted with E.Z.N.A.® Total RNA Kit I (Omega Bio-Tek, Atlanta, GA, USA). Reverse transcription was undertaken with the Transcriptor First Strand cDNA Synthesis kit (Roche, Basel, Switzerland). For miRNA, total RNA was extracted with the PrimeScript miRNA cDNA Synthesis kit (TaKaRa Biotechnology, Shiga, Japan). Then, complimentary (c)DNA was amplified and quantified using a CFX96 real-time thermocycler (Bio-Rad Laboratories, Hercules, CA, USA) with SsoAdvanced™ Universal SYBR® Green Supermix (Bio-Rad Laboratories). Expression of lncRNA and miRNA was normalized to that of ACTB and U6, respectively. Relative gene expression was analyzed by the 2−ΔΔCT method.
Cell Transfection
Cells (2×105) were seeded in six-well plates and cultured overnight. Then, cells underwent transfection assays. Small interfering (si)RNA targeting lncRNA NEAT1, miR-146b-5p mimics, scrambled oligonucleotides and pcDNA3.1-NEAT1 were obtained from Shanghai GenePharma (Shanghai, China). Transfection was undertaken with Lipofectamine™ 3000 Transfection Reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol.
Western Blotting
Total protein in BC cells after transfections was extracted using RIPA buffer (Thermo Fisher Scientific, Waltham, MA, USA) containing a protease inhibitor cocktail (Roche). The protein concentration was determined using a BCA™ Protein Assay Kit (Invitrogen). Then, proteins (50 μg) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis using 8% gels and transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad Laboratories). Next, PVDF membranes were blocked and incubated with primary antibodies against E-cadherin (1:1000 dilution), vimentin (1:1000), and β-actin (1:1000) (Cell Signaling Technology, Danvers, MA, USA) overnight at 4°C, followed by incubation with a horseradish peroxidase-conjugated secondary antibody (1:2000 dilution; Cell Signaling Technology) for 1 h at room temperature. Then, protein bands were detected by an enhanced chemiluminescence system according to manufacturer (Bio-Rad Laboratories) protocols.
Cell-Proliferation Assay
The effects of lncRNA NEAT1 and miR-146b-5p on proliferation of BCs cells were examined by the Cell Counting Kit (CCK)-8 assay (Beyotime Biotechnology, Beijing, China) and cell colony-formation assay. In brief, cells (2×103) seeded in 96-well plates were transfected with miRNA mimic, siRNA or plasmids. For the CCK-8 assay, absorbance at 450 nm was measured with a microplate reader when cells were transfected for 0, 24, 48, and 72 h, respectively. For the cell colony-formation assay, cells were seeded into six-well plates at 2000 cells per well. Then, cells cultured for 12 days were fixed with 4% paraformaldehyde and stained with 0.05% Crystal Violet. Images of cell colonies were photographed and the number of cell colonies quantified.
Wound-Healing Assay
A wound-healing assay was conducted to determine the effect of lncRNA NEAT1 and miR-146b-5p on migration of BC cells. In brief, cells (2×105) seeded in six-well plates were transfected as indicated and cultured to ~90% confluence. Then, cells were scratched with 200-μL pipette tips and washed with phosphate-buffered saline to discard cell debris. After 24-h incubation, the wound width of monolayers of BC cells was observed and wound area quantified.
Transwell™ Assay
The effects of lncRNA NEAT1 and miR-146b-5p on the invasion of BC cells were determined by Transwell assays (Corning, Corning, NY, USA). Cells (4×104) were resuspended in serum-free medium and added to the upper filters (which had been pre-coated with the diluent Matrigel™ (Corning)). The bottom chambers were filled with 600 μL of culture medium containing 10% fetal bovine serum. After 24-h incubation, invasive cells were fixed with 4% paraformaldehyde and stained with 0.2% Crystal Violet. Then, cotton swabs were used to rub away the cells on the inner sides of the upper filters, and the number of invasive cells was counted.
Luciferase Reporter Assay
The 3ʹ-UTR of lncRNA NEAT1 with miR-146b-5p binding sites and its mutant were cloned into the pGL3 luciferase reporter vector (Invitrogen). Cells (5×103) were seeded in 96-well plates and cultured overnight. Then, MCF-7 cells were co-transfected with miR-146b-5p mimics and wild-type p-GL3-NEAT1 (NEAT1-WT) or mutant p-GL3-NEAT1 (NEAT1-Mut). After transfection for 48 h, a Dual-Luciferase Reporter Assay System (Promega, Fitchburg, WI, USA) was used to measure the luciferase activity, which was normalized to the activity of Renilla luciferase driven by a constitutively expressed promoter in the phRL vector.
RNA-Binding Protein Immunoprecipitation (RIP) Assay
Cells (2×105) were seeded in six-well plates and cultured overnight. Then, the RIP assay was carried out using the Magna RIP RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA) and Argonaute-2 antibody (Cell Signaling Technology) in accordance with the literature.25,26 Expression of co-precipitated RNAs was determined by qRT-PCR.
RNA-Pulldown Assay
Biotin-labeled NC miRNA (NC-Bio) and biotin-labeled miR-146b-5p (miR-146b-5p-Bio) were obtained from Shanghai GenePharma. Cells (2×105) were seeded in six-well plates and cultured overnight. Then, cells were transfected with bio-NC miRNA or bio-miR-146b-5p for 48 h. Next, an RNA-pulldown experiment using the Magnetic RNA Protein Pull-down kit (Thermo Fisher Scientific) was done according to manufacturer instructions. Expression of lncRNA NEAT1 in pulled-down RNAs was measured by qRT-PCR.
Statistical Analyses
Statistical analyses were processed using Prism 7.0 (GraphPad, San Diego, CA, USA). Data are the mean ± SD. Significance was determined by the two-tailed Student’s t-test (two groups) or one-way ANOVA followed by the Tukey’s test (more than two groups). P < 0.05 was considered significant.
Results
Expression of lncRNA NEAT1 is Upregulated in BC Tissues and Cell Lines
To investigate the role of lncRNA NEAT1 in BC progression, expression of lncRNA NEAT1 in human BC tissues and adjacent non-tumor tissues was measured by qRT-PCR. Expression of lncRNA NEAT1 was upregulated significantly in human BC tissues compared with that in adjacent non-tumor tissues (P < 0.001) (Figure 1A). Then, to analyze the correlation between expression of lncRNA NEAT1 and overall survival in patients with BC, 68 BC tissues were divided into two groups (high expression of NEAT1 and low expression of NEAT1) (Figure 1B). High expression of lncRNA NEAT1 was associated with reduced overall survival in patients with BC (P < 0.001) (Figure 1C). Moreover, compared with a human normal BC line (MCF10A), expression of lncRNA NEAT1 increased by 1.5-to-2.5-fold in five human BC cell lines (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3) (Figure 1D). Taken together, these data suggested that lncRNA NEAT1 might function as a tumor-promoting lncRNA in progression of BC cells.
Figure 1
Expression of lncRNA NEAT1 is upregulated in breast-cancer tissues and predicts poor overall survival in breast-cancer patients. (A) Relative expression of lncRNA NEAT1 in breast-cancer tissues and adjacent tissues was determined by qRT-PCR. (B) Breast-cancer tissues (n = 56) were divided into two groups (high and low expression of lncRNA NEAT1) based on median expression. (C) Kaplan–Meier analyses of correlation between lncRNA NEAT1 expression and overall survival in patients with breast cancer. (D) Expression of lncRNA NEAT1 in human normal breast cells (MCF10A) and human breast cancer cells (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3) was measured by qRT-PCR. Data are the mean ± SD. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with normal tissues or MCF-10A cells.
Expression of lncRNA NEAT1 is upregulated in breast-cancer tissues and predicts poor overall survival in breast-cancer patients. (A) Relative expression of lncRNA NEAT1 in breast-cancer tissues and adjacent tissues was determined by qRT-PCR. (B) Breast-cancer tissues (n = 56) were divided into two groups (high and low expression of lncRNA NEAT1) based on median expression. (C) Kaplan–Meier analyses of correlation between lncRNA NEAT1 expression and overall survival in patients with breast cancer. (D) Expression of lncRNA NEAT1 in human normal breast cells (MCF10A) and human breast cancer cells (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3) was measured by qRT-PCR. Data are the mean ± SD. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with normal tissues or MCF-10A cells.
Silencing Expression of lncRNA NEAT1 Inhibits EMT and Suppresses the Proliferation, Migration, and Invasion of BC Cells
To investigate the effect of lncRNA NEAT1 on the proliferation and mobility of cells, MDA-MB-231 cells were transfected with lncRNA NEAT1-specific siRNA. qRT-PCR showed that expression of lncRNA NEAT1 was downregulated significantly in cells transfected with lncRNA NEAT1 siRNA (P < 0.001) (Figure 2A). Then, the proliferation of cells was determined by the CCK-8 assay and cell colony-formation assay. Silencing of expression of lncRNA NEAT1 inhibited proliferation dramatically (Figure 2B) and led to a reduction in the number of cell colonies by ~50% (Figure 2C) compared with that in cells transfected with NC siRNA. EMT has an important role in the invasion and metastasis of tumor cells. Western blotting and qRT-PCR revealed that expression of E-cadherin (marker of epithelial cells) was upregulated, whereas expression of vimentin (marker of mesenchymal cells) was downregulated significantly in cells transfected with lncRNA NEAT1 siRNA (Figure 2D and E). Then, cell mobility after transfection with lncRNA NEAT1 siRNA was determined by a wound-healing assay and Transwell assay. Knockdown of expression of lncRNA NEAT1 inhibited the closure of wound width and suppressed migration of MDA-MB-231 cells (Figure 2F and G). Moreover, the number of invaded cells was reduced by 50% after transfection with lncRNA NEAT1 siRNA (Figure 2H and I). Silencing of expression of lncRNA NEAT1 inhibited the proliferation, migration and invasion of MDA-MB-453 cells (). Taken together, these results demonstrated that knockdown of expression of lncRNA NEAT1 inhibited EMT and suppressed the proliferation, migration and invasion of BC cells.
Figure 2
Knockdown of expression of lncRNA NEAT1 inhibits EMT and suppresses the proliferation, migration, and invasion of breast-cancer cells. MDA-MB-231 cells were transfected with lncRNA NEAT1 siRNA or negative control (NC) siRNA. (A) Expression of lncRNA NEAT1 in cells was measured by qRT-PCR. (B) Effect of lncRNA NEAT1 on proliferation of MDA-MB-231 cells was determined by the CCK-8 assay. (C) Representative images and quantification of cell colonies. (D and E) Expression of E-cadherin and vimentin was measured by (D) Western blotting and (E) qRT-PCR. (F and G) A wound-healing assay was used to detect migration of MDA-MB-231 cells. (F) Representative images of wound width and (G) quantification of cell migration. (H and I) Invasion capacity of cells was detected by the Transwell™ assay. (H) Representative images and (I) quantification of invasive cells after the indicated transfections. Data are the mean ± SD, n = 3. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with NC siRNA groups.
Knockdown of expression of lncRNA NEAT1 inhibits EMT and suppresses the proliferation, migration, and invasion of breast-cancer cells. MDA-MB-231 cells were transfected with lncRNA NEAT1 siRNA or negative control (NC) siRNA. (A) Expression of lncRNA NEAT1 in cells was measured by qRT-PCR. (B) Effect of lncRNA NEAT1 on proliferation of MDA-MB-231 cells was determined by the CCK-8 assay. (C) Representative images and quantification of cell colonies. (D and E) Expression of E-cadherin and vimentin was measured by (D) Western blotting and (E) qRT-PCR. (F and G) A wound-healing assay was used to detect migration of MDA-MB-231 cells. (F) Representative images of wound width and (G) quantification of cell migration. (H and I) Invasion capacity of cells was detected by the Transwell™ assay. (H) Representative images and (I) quantification of invasive cells after the indicated transfections. Data are the mean ± SD, n = 3. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with NC siRNA groups.
Overexpression of lncRNA NEAT1 Induces EMT and Promotes the Proliferation, Migration, and Invasion of BC Cells
Next, we evaluated whether ectopic expression of lncRNA NEAT1 induced EMT and promoted the proliferation, migration and invasion of MCF-7 cells. Expression of lncRNA NEAT1 increased by more than 10-fold in cells transfected with a lncRNA NEAT1-overexpressing plasmid (Figure 3A). Overexpression of lncRNA NEAT1 promoted proliferation of BC cells significantly (Figure 3B) and induced a 4-fold increase in the number of cell colonies (Figure 3C). Western blotting and qRT-PCR revealed that E-cadherin expression was downregulated, whereas vimentin expression was upregulated, in cells transfected with a lncRNA NEAT1-overexpressing plasmid compared with that in cells transfected with a vector (Figure 3D, E). NEAT1 overexpression promoted migration of MCF-7 cells (Figure 3F and G). Moreover, overexpression of lncRNA NEAT1 increased the number of invasive cells (Figure 3H and I). Taken together, these data suggested that ectopic expression of lncRNA NEAT1 induced EMT and promoted the proliferation, migration and invasion of BC cells.
Figure 3
Ectopic expression of lncRNA NEAT1 induces EMT and promotes the proliferation, migration, and invasion of breast-cancer cells. MCF-7 cells were transfected with a lncRNA NEAT1-overexpressing plasmid or pcDNA3.1 vector. (A) Expression of lncRNA NEAT1 in cells was determined by qRT-PCR. (B and C) Effect of lncRNA NEAT1 on proliferation of MCF-7 cells was examined by (B) the CCK-8 assay and (C) cell colony-formation assay. (D and E) Expression of E-cadherin and vimentin in breast-cancer cells was detected by (D) Western blotting and (E) qRT-PCR. (F and G) Wound-healing assay to ascertain the effect of lncRNA NEAT1 on migration of breast-cancer cells. (H) Representative images and (I) quantification of the number of invasive cells. Data are the mean ± SD, n = 3. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with the cells transfected with the pcDNA3.1 vector.
Ectopic expression of lncRNA NEAT1 induces EMT and promotes the proliferation, migration, and invasion of breast-cancer cells. MCF-7 cells were transfected with a lncRNA NEAT1-overexpressing plasmid or pcDNA3.1 vector. (A) Expression of lncRNA NEAT1 in cells was determined by qRT-PCR. (B and C) Effect of lncRNA NEAT1 on proliferation of MCF-7 cells was examined by (B) the CCK-8 assay and (C) cell colony-formation assay. (D and E) Expression of E-cadherin and vimentin in breast-cancer cells was detected by (D) Western blotting and (E) qRT-PCR. (F and G) Wound-healing assay to ascertain the effect of lncRNA NEAT1 on migration of breast-cancer cells. (H) Representative images and (I) quantification of the number of invasive cells. Data are the mean ± SD, n = 3. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with the cells transfected with the pcDNA3.1 vector.
miR-146b-5p is a Target of lncRNA NEAT1
lncRNA can bind to miRNA and, thus, inhibit the expression and activity of miRNA. Hence, we further explored the regulatory mechanisms of lncRNA NEAT1 on BC progression. Starbase 2.0 () was used to predict the target of lncRNA NEAT1. We observed a potential binding site between lncRNA NEAT1 and miR-146b-5p (Figure 4A). Then, a dual-luciferase reporter gene assay was used to ascertain if miR-146b-4p was bound directly to the 3ʹ-UTR of lncRNA NEAT1. Co-transfection of NEAT1-WT and miR-146b-5p mimics reduced the luciferase activity significantly, whereas co-transfection with NEAT1-Mut and miR-146b-5p mimics had a negligible effect on the luciferase activity of BC cells (Figure 4B). These differences suggested that the 3ʹ-UTR of lncRNA NEAT1 was bound complementarily to miR-146b-5p. The RIP assay showed that lncRNA NEAT1 and miR-146b-5p were enriched in Ago2 pellets compared with that in IgG groups (Figure 4C). The RNA-pulldown assay showed that endogenous lncRNA NEAT1 could be pulled down in cells transfected with miR-146b-5p-Bio when compared with cells transfected with NC-Bio (P < 0.001) (Figure 4D). Collectively, these results suggested that miR-146b-5p was a direct target of lncRNA NEAT1.
Figure 4
miR-146b-5p is a direct target of lncRNA NEAT1 in breast-cancer cells. (A) The recognition sequences between lncRNA NEAT1 and miR-146b-5p were identified using Starbase 2.0. (B) MCF-7 cells were co-transfected with miR-146b-5p mimics and NEAT1-WT or NEAT1-Mut. Then, the luciferase activity was measured by the dual-luciferase reporter assay. Data are the mean ± SD, n = 3. ***P < 0.001 compared with miR-NC groups. (C) The interaction between lncRNA NEAT1 and miR-146b-5p was determined by an Ago2-RIP assay. Data are the mean ± SD, n = 3. ***P < 0.001 compared with IgG groups. (D) An RNA-pulldown assay was undertaken with MCF-7 cells transfected with biotin-labeled NC or miR-146b-5p mimics. Endogenous expression of lncRNA NEAT1 was measured by qRT-PCR. Data are the mean ± SD, n = 3. *P < 0.05 and ***P < 0.001 compared with NC-Bio groups.
miR-146b-5p is a direct target of lncRNA NEAT1 in breast-cancer cells. (A) The recognition sequences between lncRNA NEAT1 and miR-146b-5p were identified using Starbase 2.0. (B) MCF-7 cells were co-transfected with miR-146b-5p mimics and NEAT1-WT or NEAT1-Mut. Then, the luciferase activity was measured by the dual-luciferase reporter assay. Data are the mean ± SD, n = 3. ***P < 0.001 compared with miR-NC groups. (C) The interaction between lncRNA NEAT1 and miR-146b-5p was determined by an Ago2-RIP assay. Data are the mean ± SD, n = 3. ***P < 0.001 compared with IgG groups. (D) An RNA-pulldown assay was undertaken with MCF-7 cells transfected with biotin-labeled NC or miR-146b-5p mimics. Endogenous expression of lncRNA NEAT1 was measured by qRT-PCR. Data are the mean ± SD, n = 3. *P < 0.05 and ***P < 0.001 compared with NC-Bio groups.
miR-146b-5p Expression is Regulated Negatively by lncRNA NEAT1 in BC
lncRNA NEAT1 was bound directly to miR-146b-5p, so we examined if expression of lncRNA NEAT1 was correlated negatively with miR-146b-5p expression in BC tissues and cell lines. qRT-PCR revealed that miR-146b-5p expression was downregulated significantly in BC tissues compared with that in adjacent non-tumor tissues (P < 0.001) (Figure 5A). Expression of lncRNA NEAT1 had a dramatically negative correlation with miR-146b-5p expression in BC tissues (R2 = 0.2259, P < 0.05) (Figure 5B). Compared with a human normal breast cell line (MCF10A), expression of lncRNA NEAT1 fell by 35% to 60% in five human BC cell lines (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3 cells) (Figure 5C). Taken together, our data suggest that lncRNA NEAT1 had a negative correlation with miR-146b-5p in BC tissues and cell lines, and confirmed that miR-146b-5p could be a target of lncRNA NEAT1.
Figure 5
miR-146b-5p expression is downregulated in breast-cancer tissues and cell lines. (A) Relative expression of miR-146b-5p in breast-cancer tissues and adjacent tissues was determined by qRT-PCR. (B) Pearson correlation analysis of expression of lncRNA NEAT1 and miR-146b-5p in breast-cancer tissues. (C) qRT-PCR was done to measure expression of miR-146b-5p in normal breast cells (MCF10A) and breast cancer cell lines (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3). Data are the mean ± SD. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with normal tissues or MCF-10A cells.
miR-146b-5p expression is downregulated in breast-cancer tissues and cell lines. (A) Relative expression of miR-146b-5p in breast-cancer tissues and adjacent tissues was determined by qRT-PCR. (B) Pearson correlation analysis of expression of lncRNA NEAT1 and miR-146b-5p in breast-cancer tissues. (C) qRT-PCR was done to measure expression of miR-146b-5p in normal breast cells (MCF10A) and breast cancer cell lines (BT474, MCF-7, MDA-MB-231, MDA-MB-453, SK-BR-3). Data are the mean ± SD. *P < 0.05, **P < 0.01, and ***P < 0.001 compared with normal tissues or MCF-10A cells.
miR-146b-5p Inhibits lncRNA NEAT1-Mediated Progression of BC Cells
To further confirm the effect of miR-146b-5p and lncRNA NEAT1 on EMT and the proliferation, migration and invasion of BC cells, MCF-7 cells were co-transfected with miR-146b-5p mimics and a lncRNA NEAT1-overexpressing plasmid. miR-146b-5p mimics abrogated the ability of lncRNA NEAT1 to promote proliferation of MCF-7 cells (Figure 6A) and formation of cell colonies (Figure 6B). Overexpression of lncRNA NEAT1 inhibited expression of E-cadherin and promoted expression of vimentin in BC cells, and this action could be reversed in cells co-transfected with a lncRNA NEAT1-overexpressing plasmid and miR-146b-5p mimics (Figure 6C and D). miR-146b-5p mimics impaired the ability of lncRNA NEAT1 to promote the migration and invasion of MCF-7 cells (Figure 6E–H). Collectively, these results demonstrated that lncRNA NEAT1 induced EMT and promoted the proliferation, migration and invasion of BC cells by targeting miR-146b-5p.
Figure 6
miR-146b-5p overexpression inhibits lncRNA NEAT1-induced EMT, as well as the proliferation, migration, and invasion of breast-cancer cells. MCF-7 cells were co-transfected with a lncRNA NEAT1-overexpressing plasmid and miR-146b-5p mimics. (A and B) Effect of miR-146b-5p and lncRNA NEAT1 on proliferation of MCF-7 cells was determined by the (A) CCK-8 assay and (B) cell colony-formation assay. (C and D) Expression of E-cadherin and vimentin in cells after the indicated transfections was determined by (C) Western blotting and (D) qRT-PCR. (E and F) Representative image and quantification of the wound width in MCF-7-cell monolayers. (G and H) Representative images and quantification of invasive cells after indicated treatments. Data are the mean ± SD, n = 3. **P < 0.01 and ****P < 0.001 compared with the cells transfected with the pcDNA3.1 vector. #P < 0.05, ##P < 0.01, and ###P < 0.001 compared with the cells transfected with a lncRNA NEAT1-overexpressing plasmid.
miR-146b-5p overexpression inhibits lncRNA NEAT1-induced EMT, as well as the proliferation, migration, and invasion of breast-cancer cells. MCF-7 cells were co-transfected with a lncRNA NEAT1-overexpressing plasmid and miR-146b-5p mimics. (A and B) Effect of miR-146b-5p and lncRNA NEAT1 on proliferation of MCF-7 cells was determined by the (A) CCK-8 assay and (B) cell colony-formation assay. (C and D) Expression of E-cadherin and vimentin in cells after the indicated transfections was determined by (C) Western blotting and (D) qRT-PCR. (E and F) Representative image and quantification of the wound width in MCF-7-cell monolayers. (G and H) Representative images and quantification of invasive cells after indicated treatments. Data are the mean ± SD, n = 3. **P < 0.01 and ****P < 0.001 compared with the cells transfected with the pcDNA3.1 vector. #P < 0.05, ##P < 0.01, and ###P < 0.001 compared with the cells transfected with a lncRNA NEAT1-overexpressing plasmid.
Discussion
BC is the major cause of cancer-related death in women worldwide. BC patients obtain only limited therapeutic outcomes, and most of them have poor improvements in survival benefits due to tumor recurrence and distant metastasis.1–5 Multiple factors regulate the growth and metastasis of BC cells, such as EMT27 as well as genetic and epigenetic alternations in tumor cells.17,28,29 An increasing number of studies has focused on lncRNA dysregulation in tumor cells. We found that the high expression of lncRNA NEAT1 in BC tissues and BC cell lines was correlated negatively with overall survival in BC patients. Further investigations showed that lncRNA NEAT1 induced EMT and promoted the proliferation, migration and invasion of BC cells by “sponging” miR-146b-5p. Our study indicated that lncRNA NEAT1 has a role in the growth and metastasis of BC cells.lncRNA is a type of non-coding RNA, and has an important role in transcriptional control, chromatin remodeling, intracellular signaling and posttranscriptional regulation.30,31 Scholars have reported that lncRNA is closely associated with tumorigenesis,32 tumor growth,33 angiogenesis,34 metastasis,16 drug resistance,35 and cell stemness.36 Similar to the role of miRNA in tumor progression, lncRNA can be divided into “tumor-promoting lncRNA” and “tumor-suppressive lncRNA”. We demonstrated that lncRNA NEAT1 functioned as a tumor-promoting lncRNA in BC progression. Expression of lncRNA NEAT1 had a negative correlation with miR-146b-5p expression in BC tissues. Moreover, ectopic expression of miR-146b-5p inhibited lncRNA NEAT1-mediated EMT, as well as the proliferation, migration and mobility of BC cells, which suggested that miR-146b-5p might serve as a tumor-suppressive miRNA in BC. miRNAs can inhibit protein translation and/or degrade targeted mRNAs.37 miR-146b-5p overexpression inhibited EMT of BC cells, as indicated by upregulation of E-cadherin expression and downregulation of vimentin expression. These changes suggested that miR-146b-5p might modulate the transcription and translation of EMT-related genes in BC cells. Clearly, more research is needed to explore further the mechanism of action of miR-146b-5p in BC progression. In addition to sponging miRNAs, lncRNA can also regulate transcription and translation. Whether lncRNA NEAT1 regulates expression of EMT- or metastasis-related genes directly in BC cells merits further investigation.Expression of lncRNA NEAT1 in MDA-MB-231 and MDA-MB-453 cells (two TNBC cell lines) was higher than that in BT474 and MCF cells (two BC cell lines that are positive for estrogen receptor (ER) expression). TNBC is characterized by negative expression of the ER, progesterone receptor (PR) and human epidermal growth factor receptor (HER)-2. TNBC is the most aggressive type of BC, and has highly proliferative and metastatic features.38–40 TNBC accounts for about 10–20% of all types of BC.38,39 Different from ER-positive or HER-2-positive BC, efficacious agents to treat TNBC are lacking.41,42 However, whether expression of lncRNA NEAT1 is relevant to expression of HER-2, PR, or ER in BC tissues deserves further research.
Conclusions
lncRNA NEAT1 has a role in EMT as well as the proliferation, migration and invasion of BC cells probably because it can target miR-146b-5p. Our findings suggest that targeting lncRNA NEAT1 might be a promising approach to inhibit the growth and metastasis of BC cells.
Authors: Rebecca Dent; Maureen Trudeau; Kathleen I Pritchard; Wedad M Hanna; Harriet K Kahn; Carol A Sawka; Lavina A Lickley; Ellen Rawlinson; Ping Sun; Steven A Narod Journal: Clin Cancer Res Date: 2007-08-01 Impact factor: 12.531
Authors: Jonathan Krell; Justin Stebbing; Claudia Carissimi; Aleksandra F Dabrowska; Alexander de Giorgio; Adam E Frampton; Victoria Harding; Valerio Fulci; Giuseppe Macino; Teresa Colombo; Leandro Castellano Journal: Genome Res Date: 2015-12-23 Impact factor: 9.043
Authors: M Guy Roukens; Danielle Seinstra; Cynthia L Frederiks; Ana Rita Lourenço; Cornelieke E Pals; Stephin J Vervoort; Andreia S Margarido; Jacco van Rheenen; Paul J Coffer Journal: Nat Commun Date: 2020-02-07 Impact factor: 14.919