Literature DB >> 32801365

Beyond monogenetic rare variants: tackling the low rate of genetic diagnoses in predominantly antibody deficiency.

Emily S J Edwards1,2, Julian J Bosco2,3, Samar Ojaimi2,4,5,6, Robyn E O'Hehir1,2,3, Menno C van Zelm7,8,9.   

Abstract

Predominantly antibody deficiency (PAD) is the most prevalent form of primary immunodeficiency, and is characterized by broad clinical, immunological and genetic heterogeneity. Utilizing the current gold standard of whole exome sequencing for diagnosis, pathogenic gene variants are only identified in less than 20% of patients. While elucidation of the causal genes underlying PAD has provided many insights into the cellular and molecular mechanisms underpinning disease pathogenesis, many other genes may remain as yet undefined to enable definitive diagnosis, prognostic monitoring and targeted therapy of patients. Considering that many patients display a relatively late onset of disease presentation in their 2nd or 3rd decade of life, it is questionable whether a single genetic lesion underlies disease in all patients. Potentially, combined effects of other gene variants and/or non-genetic factors, including specific infections can drive disease presentation. In this review, we define (1) the clinical and immunological variability of PAD, (2) consider how genetic defects identified in PAD have given insight into B-cell immunobiology, (3) address recent technological advances in genomics and the challenges associated with identifying causal variants, and (4) discuss how functional validation of variants of unknown significance could potentially be translated into increased diagnostic rates, improved prognostic monitoring and personalized medicine for PAD patients. A multidisciplinary approach will be the key to curtailing the early mortality and high morbidity rates in this immune disorder.

Entities:  

Keywords:  Functional validation; Genetic diagnosis; Genomics; Predominantly antibody deficiency

Mesh:

Substances:

Year:  2020        PMID: 32801365      PMCID: PMC8027216          DOI: 10.1038/s41423-020-00520-8

Source DB:  PubMed          Journal:  Cell Mol Immunol        ISSN: 1672-7681            Impact factor:   11.530


  257 in total

1.  Human Inborn Errors of Immunity: 2019 Update of the IUIS Phenotypical Classification.

Authors:  Aziz Bousfiha; Leila Jeddane; Capucine Picard; Waleed Al-Herz; Fatima Ailal; Talal Chatila; Charlotte Cunningham-Rundles; Amos Etzioni; Jose Luis Franco; Steven M Holland; Christoph Klein; Tomohiro Morio; Hans D Ochs; Eric Oksenhendler; Jennifer Puck; Troy R Torgerson; Jean-Laurent Casanova; Kathleen E Sullivan; Stuart G Tangye
Journal:  J Clin Immunol       Date:  2020-02-11       Impact factor: 8.317

2.  International Consensus Document (ICON): Common Variable Immunodeficiency Disorders.

Authors:  Francisco A Bonilla; Isil Barlan; Helen Chapel; Beatriz T Costa-Carvalho; Charlotte Cunningham-Rundles; M Teresa de la Morena; Francisco J Espinosa-Rosales; Lennart Hammarström; Shigeaki Nonoyama; Isabella Quinti; John M Routes; Mimi L K Tang; Klaus Warnatz
Journal:  J Allergy Clin Immunol Pract       Date:  2015-11-07

Review 3.  Contribution of high-throughput DNA sequencing to the study of primary immunodeficiencies.

Authors:  Capucine Picard; Alain Fischer
Journal:  Eur J Immunol       Date:  2014-09-12       Impact factor: 5.532

Review 4.  Primary antibody deficiencies.

Authors:  Anne Durandy; Sven Kracker; Alain Fischer
Journal:  Nat Rev Immunol       Date:  2013-06-14       Impact factor: 53.106

5.  Infection outcomes in patients with common variable immunodeficiency disorders: relationship to immunoglobulin therapy over 22 years.

Authors:  Mary Lucas; Martin Lee; Jenny Lortan; Eduardo Lopez-Granados; Siraj Misbah; Helen Chapel
Journal:  J Allergy Clin Immunol       Date:  2010-05-14       Impact factor: 10.793

6.  The European internet-based patient and research database for primary immunodeficiencies: results 2006-2008.

Authors:  B Gathmann; B Grimbacher; J Beauté; Y Dudoit; N Mahlaoui; A Fischer; V Knerr; G Kindle
Journal:  Clin Exp Immunol       Date:  2009-09       Impact factor: 4.330

Review 7.  Genes associated with common variable immunodeficiency: one diagnosis to rule them all?

Authors:  Delfien J A Bogaert; Melissa Dullaers; Bart N Lambrecht; Karim Y Vermaelen; Elfride De Baere; Filomeen Haerynck
Journal:  J Med Genet       Date:  2016-06-01       Impact factor: 6.318

Review 8.  Lessons learned from the study of human inborn errors of innate immunity.

Authors:  Giorgia Bucciol; Leen Moens; Barbara Bosch; Xavier Bossuyt; Jean-Laurent Casanova; Anne Puel; Isabelle Meyts
Journal:  J Allergy Clin Immunol       Date:  2018-08-01       Impact factor: 10.793

Review 9.  Recent advances in elucidating the genetics of common variable immunodeficiency.

Authors:  Vaishali Aggarwal; Aaqib Zaffar Banday; Ankur Kumar Jindal; Jhumki Das; Amit Rawat
Journal:  Genes Dis       Date:  2019-10-15
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  7 in total

Review 1.  B- and T-Cell Subset Abnormalities in Monogenic Common Variable Immunodeficiency.

Authors:  Saba Fekrvand; Shaghayegh Khanmohammadi; Hassan Abolhassani; Reza Yazdani
Journal:  Front Immunol       Date:  2022-06-15       Impact factor: 8.786

2.  Primary immunodeficiency-related genes in neonatal intensive care unit patients with various genetic immune abnormalities: a multicentre study in China.

Authors:  Tianwen Zhu; Xiaohui Gong; Fei Bei; Li Ma; Jingjing Sun; Jian Wang; Gang Qiu; Jianhua Sun; Yu Sun; Yongjun Zhang
Journal:  Clin Transl Immunology       Date:  2021-03-22

3.  Case Report: Cytomegalovirus Disease Is an Under-Recognized Contributor to Morbidity and Mortality in Common Variable Immunodeficiency.

Authors:  Samantha Chan; Jack Godsell; Miles Horton; Anthony Farchione; Lauren J Howson; Mai Margetts; Celina Jin; Josh Chatelier; Michelle Yong; Joseph Sasadeusz; Jo A Douglass; Charlotte A Slade; Vanessa L Bryant
Journal:  Front Immunol       Date:  2022-02-15       Impact factor: 7.561

Review 4.  The pediatric common variable immunodeficiency - from genetics to therapy: a review.

Authors:  Aleksandra Szczawinska-Poplonyk; Eyal Schwartzmann; Ewelina Bukowska-Olech; Michal Biernat; Stanislaw Gattner; Tomasz Korobacz; Filip Nowicki; Monika Wiczuk-Wiczewska
Journal:  Eur J Pediatr       Date:  2021-12-23       Impact factor: 3.860

5.  Common Variable Immunodeficiency Disorders as a Model for Assessing COVID-19 Vaccine Responses in Immunocompromised Patients.

Authors:  Rohan Ameratunga; See-Tarn Woon; Richard Steele; Klaus Lehnert; Euphemia Leung; Emily S J Edwards; Anna E S Brooks
Journal:  Front Immunol       Date:  2022-01-18       Impact factor: 7.561

6.  Common Variable Immunodeficiency in Elderly Patients: A Long-Term Clinical Experience.

Authors:  Maria Giovanna Danieli; Cristina Mezzanotte; Jacopo Umberto Verga; Denise Menghini; Veronica Pedini; Maria Beatrice Bilò; Gianluca Moroncini
Journal:  Biomedicines       Date:  2022-03-09

7.  Are All Primary Immunodeficiency Disorders Inborn Errors of Immunity?

Authors:  Rohan Ameratunga; Hilary Longhurst; Klaus Lehnert; Richard Steele; Emily S J Edwards; See-Tarn Woon
Journal:  Front Immunol       Date:  2021-07-21       Impact factor: 7.561

  7 in total

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