Literature DB >> 32798717

Transcriptome analysis of biological pathways associated with heterosis in Chinese cabbage.

Xiaoping Kong1, Lin Chen2, Tingzhen Wei3, Hongwei Zhou3, Chengfang Bai3, Xiangping Yan3, Zenjian Miao3, Jianming Xie4, Lugang Zhang5.   

Abstract

Chinese cabbage is an important vegetable in Asia, and high-yielding hybrids are needed to cope with the growing demand. A comparative transcriptome profiling was conducted to reveal the differentially expressed genes (DEGs) associated with heterosis in two hybrids relative to their parents. Our data suggests that heterosis is underlined by a significant upregulation of gene expression. High expression of DEGs in glycolysis and photosynthesis pathways in hybrids depicted their relation with growth and hybrid vigor. Besides, DEGs related to auxin, abscisic acid, ethylene and gibberellin were identified, implying that these hormones may boost the mechanisms of growth and developmental processes in the hybrids. Furthermore, transcription factors, including bHLH, ERF, MYB and WRKY were predicted to regulate downstream genes linked to hybrid vigor. Collectively, the present study will be helpful for a better understanding of the regulation mechanisms of heterosis to aid cabbage yield improvement.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Differentially expressed genes; Growth and development; Hybrid vigor; RNA-Seq; Transcription factors

Year:  2020        PMID: 32798717     DOI: 10.1016/j.ygeno.2020.08.011

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  6 in total

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5.  Comparative transcriptomic analysis of maize ear heterosis during the inflorescence meristem differentiation stage.

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6.  Photosynthetic Efficiency and Glyco-Metabolism Changes in Artificial Triploid Loquats Contribute to Heterosis Manifestation.

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  6 in total

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