Literature DB >> 32794691

NMR Calculations with Quantum Methods: Development of New Tools for Structural Elucidation and Beyond.

Maribel O Marcarino1, Marı A M Zanardi2, Soledad Cicetti1, Ariel M Sarotti1.   

Abstract

Structural elucidation is an important and challenging stage in the discovery of new organic molecules. Single-crystal X-ray analysis provides the most unquestionable results, though in practice the availability of suitable crystals limits its broad use. On the other hand, NMR spectroscopy has become the leading and universal technique to accomplish the task. Despite continuous advances in the field, the misinterpretation of NMR data is commonplace, evidenced by the large number of erroneous structures being published in top journals. Quantum calculations of NMR chemical shifts and scalar coupling constants emerged as ideal complements to facilitate the elucidation process when experimental NMR data is inconclusive. Since seminal reports demonstrated that affordable DFT methods provide NMR predictions accurate enough to differentiate among closely related isomers, the discipline has experienced substantial growth. The impact has been felt in different areas, and nowadays the results of such calculations are routinely seen in high impact literature.This Account describes our investigations in the field of quantum NMR calculations, focusing on the development of tools for structural elucidation and practical applications. We pioneered the use of artificial intelligence methods in the development of novel strategies of structural validation. Our first generation of trained artificial neural networks (ANNs) showed excellent ability to identify mistakes at the atom connectivity level, whereas the use of multidimensional pattern recognition pushed the performance to the stereochemical limit. In a conceptually different approach, we developed DP4+, an updated version of the DP4 probability used to determine the most likely structure among two or more candidates when one set of experimental data is available. Increasing the level of theory in NMR calculations and including unscaled data in the formalism improved the performance of the method, further validated to settle the configuration of challenging motifs such as spiroepoxides or Mosher's derivatives. One of the limitations of DP4+ is related to the relatively large computational cost involved in obtaining DFT-optimized geometries, which led to the development of a fast variant including the valuable information provided by coupling constants (J-DP4 method).These tools were explored to suggest the most probable structure of controversial natural or unnatural products originally misassigned, with some predictions further validated by synthesis (as in the case of pseudorubriflordilactone B). The possibility of predicting the structure of a natural product without requiring authentic sample was investigated in collaboration with Prof. Pilli (UNICAMP, Brazil) in the computer-guided total synthesis and stereochemical revisions of several natural products. Despite these advances, there remain considerable challenges, such as the case of configurational assessment of polar systems featuring multiple intramolecular hydrogen bonding interactions because of the poor energy predictions provided by most DFT methods. In our latest work, we tackle this problem by averaging the results provided by randomly generated ensembles, paving the way for a new paradigm in quantum NMR-assisted structural elucidation.

Entities:  

Year:  2020        PMID: 32794691     DOI: 10.1021/acs.accounts.0c00365

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  5 in total

Review 1.  Synthesis-Driven Stereochemical Assignment of Marine Polycyclic Ether Natural Products.

Authors:  Haruhiko Fuwa
Journal:  Mar Drugs       Date:  2021-04-29       Impact factor: 5.118

2.  Stable Catechol Keto Tautomers in Cytotoxic Heterodimeric Cyclic Diarylheptanoids from the Seagrass Zostera marina.

Authors:  Yan Li; Laura Grauso; Silvia Scarpato; Nunzio Antonio Cacciola; Francesca Borrelli; Christian Zidorn; Alfonso Mangoni
Journal:  Org Lett       Date:  2021-09-07       Impact factor: 6.005

3.  Synthesis of the C1-C27 Fragment of Stambomycin D Validates Modular Polyketide Synthase-Based Stereochemical Assignments.

Authors:  Jieyan Lim; Venkaiah Chintalapudi; Haraldur G Gudmundsson; Minh Tran; Alice Bernasconi; Araceli Blanco; Lijiang Song; Gregory L Challis; Edward A Anderson
Journal:  Org Lett       Date:  2021-09-08       Impact factor: 6.005

Review 4.  Recent Advances in Mass Spectrometry-Based Structural Elucidation Techniques.

Authors:  Xin Ma
Journal:  Molecules       Date:  2022-09-30       Impact factor: 4.927

5.  A Volumetric Analysis of the 1H NMR Chemical Shielding in Supramolecular Systems.

Authors:  Jiří Czernek; Jiří Brus
Journal:  Int J Mol Sci       Date:  2021-03-24       Impact factor: 5.923

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.