Literature DB >> 3279393

Sigma elements are position-specific for many different yeast tRNA genes.

S B Sandmeyer1, V W Bilanchone, D J Clark, P Morcos, G F Carle, G M Brodeur.   

Abstract

We determined the DNA sequence of seventeen sigma elements and flanking regions in order to investigate the extent of the association between the yeast repetitive element, sigma, and tRNA genes. Fifteen of seventeen sigma elements analyzed begin at position -19 to -16 with respect to the 5' end of a tRNA-coding sequence. This region is close to the initiation point of tRNA gene transcription and contains a sequence which is modestly conserved for a number of tRNA genes. Two pairs of identical sigma elements occur as the long terminal repeats of a sequence which, together with flanking sigma elements, has the structural properties of a retrotransposon; this element has been named Ty3 (manuscript submitted). Hybridization analysis of yeast chromosomal DNA separated by orthogonal field alternation gel electrophoresis (OFAGE) showed that Ty3 and isolated sigma elements are distributed over many chromosomes in the yeast genome.

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Year:  1988        PMID： 3279393      PMCID： PMC336330          DOI： 10.1093/nar/16.4.1499

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  67 in total

1.  The primary structure of aspartate transfer ribonucleic acid from brewer's yeast. II. Partial digestions with pancreatic ribonuclease and T 1 ribonuclease and derivation of complete sequence.

Authors:  J Gangloff; G Keith; J P Ebel; G Dirheimer
Journal:  Biochim Biophys Acta       Date:  1972-01-31

2.  Structural comparison of two yeast tRNA Glu 3 genes.

Authors:  A Eigel; J Olah; H Feldmann
Journal:  Nucleic Acids Res       Date:  1981-06-25       Impact factor: 16.971

3.  Nucleotide sequence of yeast LEU2 shows 5'-noncoding region has sequences cognate to leucine.

Authors:  A Andreadis; Y P Hsu; G B Kohlhaw; P Schimmel
Journal:  Cell       Date:  1982-12       Impact factor: 41.582

4.  Characterization of the yeast tRNA Ser genomic organization and DNA sequence.

Authors:  G S Page; B D Hall
Journal:  Nucleic Acids Res       Date:  1981-02-25       Impact factor: 16.971

5.  Sequence variation in dispersed repetitive sequences in Saccharomyces cerevisiae.

Authors:  A J Kingsman; R L Gimlich; L Clarke; A C Chinault; J Carbon
Journal:  J Mol Biol       Date:  1981-02-05       Impact factor: 5.469

6.  The nucleotide sequence of cysteine transfer ribonucleic acid from baker's yeast. Identification of the products from partial degradation of the molecule and derivation of the complete sequence.

Authors:  N J Holness; G Atfield
Journal:  Biochem J       Date:  1976-02-01       Impact factor: 3.857

7.  Evidence for transposition of dispersed repetitive DNA families in yeast.

Authors:  J R Cameron; E Y Loh; R W Davis
Journal:  Cell       Date:  1979-04       Impact factor: 41.582

8.  Yeast ribosomal DNA genes are located on chromosome XII.

Authors:  T D Petes
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

9.  Dimeric tRNA precursors in yeast.

Authors:  O Schmidt; J Mao; R Ogden; J Beckmann; H Sakano; J Abelson; D Söll
Journal:  Nature       Date:  1980-10-23       Impact factor: 49.962

10.  An electrophoretic karyotype for yeast.

Authors:  G F Carle; M V Olson
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205
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  24 in total

1.  Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes.

Authors:  G A Kassavetis; D L Riggs; R Negri; L H Nguyen; E P Geiduschek
Journal:  Mol Cell Biol       Date:  1989-06       Impact factor: 4.272

2.  A yeast ARS-binding protein activates transcription synergistically in combination with other weak activating factors.

Authors:  A R Buchman; R D Kornberg
Journal:  Mol Cell Biol       Date:  1990-03       Impact factor: 4.272

3.  Transfer RNA genes are genomic targets for de Novo transposition of the yeast retrotransposon Ty3.

Authors:  D L Chalker; S B Sandmeyer
Journal:  Genetics       Date:  1990-12       Impact factor: 4.562

4.  A chimeric Ty3/Moloney murine leukemia virus integrase protein is active in vivo.

Authors:  S L Dildine; J Respess; D Jolly; S B Sandmeyer
Journal:  J Virol       Date:  1998-05       Impact factor: 5.103

5.  Characterization of a transpositionally active Ty3 element and identification of the Ty3 integrase protein.

Authors:  L J Hansen; S B Sandmeyer
Journal:  J Virol       Date:  1990-06       Impact factor: 5.103

Review 6.  The cytoplasmic and nuclear populations of the eukaryote tRNA-isopentenyl transferase have distinct functions with implications in human cancer.

Authors:  P J Smaldino; D F Read; M Pratt-Hyatt; A K Hopper; D R Engelke
Journal:  Gene       Date:  2014-09-26       Impact factor: 3.688

7.  A chimeric disposition of the elongation factor genes in Rickettsia prowazekii.

Authors:  A C Syvänen; H Amiri; A Jamal; S G Andersson; C G Kurland
Journal:  J Bacteriol       Date:  1996-11       Impact factor: 3.490

8.  Sites of RNA polymerase III transcription initiation and Ty3 integration at the U6 gene are positioned by the TATA box.

Authors:  D L Chalker; S B Sandmeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-01       Impact factor: 11.205

9.  Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3.

Authors:  P T Kinsey; S B Sandmeyer
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

10.  Two distinct subforms of the retrotransposable DRE element in NC4 strains of Dictyostelium discoideum.

Authors:  R Marschalek; J Hofmann; G Schumann; T Dingermann
Journal:  Nucleic Acids Res       Date:  1992-12-11       Impact factor: 16.971
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