Literature DB >> 32791162

Whole genome sequencing identifies genetic variants associated with co-trimoxazole hypersensitivity in Asians.

Chuang-Wei Wang1, Wichittra Tassaneeyakul2, Chun-Bing Chen3, Wei-Ti Chen4, Yu-Chuan Teng5, Cheng-Yang Huang6, Chonlaphat Sukasem7, Chun-Wei Lu8, Yun-Shien Lee9, Siew-Eng Choon10, Nontaya Nakkam2, Rosaline Chung-Yee Hui5, Yen-Hua Huang11, Ya-Ching Chang12, Yang Yu-Wei Lin13, Chee-Jen Chang14, Tsu-Man Chiu15, Wasun Chantratita16, Parinya Konyoung17, Chaw-Ning Lee18, Jettanong Klaewsongkram19, Ticha Rerkpattanapipat20, Warayuwadee Amornpinyo21, Niwat Saksit2, Pawinee Rerknimitr22, Yu Huei Huang12, Shang-Hung Lin23, Chao-Kai Hsu24, Cheng-Chi Chan25, Yu-Jr Lin14, Shuen-Iu Hung26, Wen-Hung Chung27.   

Abstract

BACKGROUND: Co-trimoxazole, a sulfonamide antibiotic, is used to treat a variety of infections worldwide, and it remains a common first-line medicine for prophylaxis against Pneumocystis jiroveci pneumonia. However, it can cause severe cutaneous adverse reaction (SCAR), including Stevens-Johnson syndrome, toxic epidermal necrolysis, and drug reaction with eosinophilia and systemic symptoms. The pathomechanism of co-trimoxazole-induced SCAR remains unclear.
OBJECTIVE: We aimed to investigate the genetic predisposition of co-trimoxazole-induced SCAR.
METHODS: We conducted a multicountry case-control association study that included 151 patients with of co-trimoxazole-induced SCAR and 4631 population controls from Taiwan, Thailand, and Malaysia, as well as 138 tolerant controls from Taiwan. Whole-genome sequencing was performed for the patients and population controls from Taiwan; it further validated the results from Thailand and Malaysia.
RESULTS: The whole-genome sequencing study (43 case patients vs 507 controls) discovered that the single-nucleotide polymorphism rs41554616, which is located between the HLA-B and MICA loci, had the strongest association with co-trimoxazole-induced SCAR (P = 8.2 × 10-9; odds ratio [OR] = 7.7). There were weak associations of variants in co-trimoxazole-related metabolizing enzymes (CYP2D6, GSTP1, GCLC, N-acetyltransferase [NAT2], and CYP2C8). A replication study using HLA genotyping revealed that HLA-B∗13:01 was strongly associated with co-trimoxazole-induced SCAR (the combined sample comprised 91 case patients vs 2545 controls [P = 7.2 × 10-21; OR = 8.7]). A strong HLA association was also observed in the case patients from Thailand (P = 3.2 × 10-5; OR = 3.6) and Malaysia (P = .002; OR = 12.8), respectively. A meta-analysis and phenotype stratification study further indicated a strong association between HLA-B∗13:01 and co-trimoxazole-induced drug reaction with eosinophilia and systemic symptoms (P = 4.2 × 10-23; OR = 40.1).
CONCLUSION: This study identified HLA-B∗13:01 as an important genetic factor associated with co-trimoxazole-induced SCAR in Asians.
Copyright © 2020 American Academy of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Co-trimoxazole; HLA-B∗13:01; severe hypersensitivity reactions; sulfonamide; whole-genome sequencing

Year:  2020        PMID: 32791162     DOI: 10.1016/j.jaci.2020.08.003

Source DB:  PubMed          Journal:  J Allergy Clin Immunol        ISSN: 0091-6749            Impact factor:   10.793


  8 in total

1.  Economic Evaluation of Multiple-Pharmacogenes Testing for the Prevention of Adverse Drug Reactions in People Living with HIV.

Authors:  Saowalak Turongkaravee; Naiyana Praditsitthikorn; Thundon Ngamprasertchai; Jiraphun Jittikoon; Surakameth Mahasirimongkol; Chonlaphat Sukasem; Wanvisa Udomsinprasert; Olivia Wu; Usa Chaikledkaew
Journal:  Clinicoecon Outcomes Res       Date:  2022-07-07

Review 2.  Role of pharmacogenomics in T-cell hypersensitivity drug reactions.

Authors:  Rebecca J Hertzman; Pooja Deshpande; Andrew Gibson; Elizabeth J Phillips
Journal:  Curr Opin Allergy Clin Immunol       Date:  2021-08-01

Review 3.  Implementation of Pharmacogenomic Information on Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis.

Authors:  Eri Tsukagoshi; Yoichi Tanaka; Yoshiro Saito
Journal:  Front Med (Lausanne)       Date:  2021-03-24

Review 4.  Genomic Risk Factors Driving Immune-Mediated Delayed Drug Hypersensitivity Reactions.

Authors:  Yueran Li; Pooja Deshpande; Rebecca J Hertzman; Amy M Palubinsky; Andrew Gibson; Elizabeth J Phillips
Journal:  Front Genet       Date:  2021-04-16       Impact factor: 4.599

Review 5.  An Updated Review of Genetic Associations With Severe Adverse Drug Reactions: Translation and Implementation of Pharmacogenomic Testing in Clinical Practice.

Authors:  Chuang-Wei Wang; Ivan Arni C Preclaro; Wei-Hsiang Lin; Wen-Hung Chung
Journal:  Front Pharmacol       Date:  2022-04-25       Impact factor: 5.988

6.  Diagnostic and therapeutic dilemma in Stevens-Johnson syndrome-like acute graft-versus-host disease after liver transplantation: A case report.

Authors:  Yi-Teng Hung; Yau-Ren Chang; Hsuan-Ning Wang; Wei-Chen Lee; Chen-Fang Lee; Chun-Bing Chen
Journal:  Front Immunol       Date:  2022-08-18       Impact factor: 8.786

7.  Case report: Drug rash with eosinophilia and systemic symptoms syndrome in a patient with anti-interferon-γ autoantibody-associated immunodeficiency.

Authors:  Yuxue Nie; Han Wang; Xiying Dong; Siqi Pan; Ting Zhang; Jun Ran; Ying Zhang; Junping Fan; Linqi Zhang; Jinglan Wang
Journal:  Front Immunol       Date:  2022-08-22       Impact factor: 8.786

Review 8.  Genetics of Severe Cutaneous Adverse Reactions.

Authors:  Shang-Chen Yang; Chun-Bing Chen; Mao-Ying Lin; Zhi-Yang Zhang; Xiao-Yan Jia; Ming Huang; Ya-Fen Zou; Wen-Hung Chung
Journal:  Front Med (Lausanne)       Date:  2021-07-15
  8 in total

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