| Literature DB >> 32784822 |
Daniel Ejarque1, Teresa Calvet2, Mercè Font-Bardia3, Josefina Pons1.
Abstract
The synthesis and characterization of one coordinationEntities:
Keywords: X-ray crystal structures; Zn(II); coordination polymer; electrostatic surface potential; hirshfeld surface analysis; secondary building unit; trinuclear complexes; α-acetamidocinnamic acid
Mesh:
Substances:
Year: 2020 PMID: 32784822 PMCID: PMC7463536 DOI: 10.3390/molecules25163615
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Outline of the synthetic schemes for compounds 1–3.
Selected bond lengths (Å), bond angles (°), and intermolecular interactions (Å) of compound 1.
| Bond Lengths (Å) | |||||
|---|---|---|---|---|---|
| Zn(1)-O(1) | 1.949(4) | Zn(2)-O(7) | 1.979(3) | ||
| Zn(1)-O(4) | 1.977(3) | Zn(2)-O(10)#1 | 2.005(5) | ||
| Zn(1)-O(12) | 2.008(3) | Zn(2)-O(6) | 2.010(3) | ||
| Zn(1)-N(2) | 2.072(4) | Zn(2)-O(6) | 2.054(4) | ||
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| O(1)-Zn(1)-O(4) | 129.1(1) | O(7)-Zn(2)-O(10)#1 | 106.6(2) | ||
| O(1)-Zn(1)-O(12) | 101.9(1) | O(7)-Zn(2)-O(6) | 101.6(1) | ||
| O(4)-Zn(1)-O(12) | 116.7(1) | O(10)#1-Zn(2)-O(6) | 103.8(1) | ||
| O(1)-Zn(1)-N(2) | 116.0(2) | O(7)-Zn(2)-N(7) | 108.2(2) | ||
| O(4)-Zn(1)-N(2) | 97.1(1) | O(10)#1-Zn(2)-N(7) | 139.1(2) | ||
| O(12)-Zn(1)-N(2) | 89.4(1) | O(6)-Zn(2)-N(7) | 89.6(1) | ||
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| N(1)-H(1)···O(2) | 0.86 | 2.02 | 2.870(5) | 173 | |
| N(4)-H(4)···O(8) | 0.86 | 2.09 | 2.899(6) | 157 | |
| C(46)-H(46A)···O(9) | 0.96 | 2.53 | 3.429(7) | 155 | |
| C(46)-H(46C)···O(8) | 0.96 | 2.49 | 3.204(8) | 131 | |
| C(31)-H(31)···Cg(4) | 0.93 | 2.67 | 3.516(5) | 151 | |
| C(40)-H(40)···Cg(4) | 0.93 | 2.79 | 3.571(5) | 142 | |
| C(64)-H(64)···Cg(1) | 0.93 | 2.97 | 3.693(8) | 135 | |
| #1: x + 1,y,z; Cg(1) = C(29) C(30) C(31) C(32) C(33) C(34); Cg(2) = N(7) C(19) C(47) C(48) C(49) C(50); Cg(3) = C(60) C(61) C(62) C(63) C(64) C(65); Cg(4) = C(51) C(52) C(53) C(54) C(55) C(56) | |||||
Figure 1(a) General view of the polymeric chain of 1 along the a axis. In detail view of (b) core atoms of the polymeric chain. (c) N-H···O, C-H···O, and π·· π intramolecular interactions. (d) N-H···O and C-H···π intramolecular interactions. The phenyl, pyridyl, and other atoms which do not participate in any intramolecular interaction have been omitted for clarity in the detailed views.
Figure 2In detail view of: (a) N-H···O interactions. (b) N-H···O and C-H···O interactions through the polymeric chains. (c) General view of the 2D layers formed by intermolecular interactions along the ac plane in 1. The phenyl, pyridyl and other atoms which do not participate in any of the mentioned interactions have been omitted for clarity.
Figure 3(a) General view of the supramolecular bc plane. (b) In-detail view of the former C-H···π interactions in 1. The phenyl, pyridyl and other atoms which do not participate in any of the mentioned interactions have been omitted for clarity.
Figure 4Molecular structure of complex: (a) 2·4CH3CN and (b) 3·4EtOH. (c) N-H···O intramolecular interactions of the ACA ligands in 2·4CH3CN and 3·4EtOH with labels assigned for complex 3·4EtOH. The phenyl and other atoms which do not participate in any of the mentioned interactions have been omitted for clarity.
Selected bond lengths (Å), bond angles (°), and intermolecular interactions (Å) of compound 2·4CH3CN.
| Bond Lengths (Å) | ||||
|---|---|---|---|---|
| Zn(1)-O(1) | 2.1028(15) | Zn(2)-O(2) | 1.9465(14) | |
| Zn(1)-O(4) | 2.1644(15) | Zn(2)-O(8) | 1.9673(15) | |
| Zn(1)-O(7) | 2.0861(15) | Zn(2)-O(5) | 1.9254(15) | |
| Zn(2)-N(4) | 2.0358(17) | |||
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| O(1)-Zn(1)-O(4) | 90.39(6) | O(1)-Zn(1)-O(4)#1 | 89.61(6) | |
| O(7)-Zn(1)-O(1) | 90.00(6) | O(7)-Zn(1)-O(4) | 93.10(6) | |
| O(7)#1-Zn(1)-O(4) | 86.90(6) | O(1)#1-Zn(1)-O(1) | 180.00(7) | |
| O(4)-Zn(1)-O(4)#1 | 180.00(4) | O(7)#1-Zn(1)-O(7) | 180.0 | |
| O(2)-Zn(2)-N(4) | 101.22(7) | O(5)-Zn(2)-N(4) | 103.85(7) | |
| O(8)-Zn(2)-N(4) | 99.97(7) | O(5)-Zn(2)-O(2) | 119.84(7) | |
| O(2)-Zn(2)-O(8) | 117.26(7) | O(5)-Zn(2)-O(8) | 110.86(7) | |
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| O(1)-Cg(1)-Cg(1)#1-O(4) | 60.32 | O(4)-Cg(1)-Cg(1)#1-O(7) | 57.80 | |
| O(7)-Cg(1)-Cg(1)#1-O(1) | 61.88 | |||
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| C(44)-H(44)···N(1W) | 0.95 | 2.60 | 3.496(4) | 157 |
| C(4W)-H(4W)A···O(9) | 0.98 | 2.30 | 3.279(3) | 177 |
| C(4W)-H(4W)C···O(3) | 0.98 | 2.46 | 3.428(4) | 172 |
| C(22)-H(22A)···Cg(2) | 0.98 | 2.69 | 3.553(3) | 148 |
| C(27)-H(27)···Cg(3) | 0.95 | 2.88 | 3.608(3) | 134 |
| Cg(3)···Cg(4) | 3.8858(14) | |||
| #1: -x + 1,-y + 1,-z + 1; Cg(1) = O(1) O(4) O(7); Cg(2) = C(26) C(27) C(28) C(29) C(30) C(31); Cg(3) = C(4) C(5) C(6) C(7) C(8) C(9); Cg(4) = N(4) C(34) C(35) C(36) C(37) C(38) | ||||
Selected bond lengths (Å), bond angles (°), and intermolecular interactions (Å) of compound 3·4EtOH.
| Bond Lengths (Å) | |||||
|---|---|---|---|---|---|
| Zn(1)-O(1) | 2.172(3) | Zn(1)-O(4) | 2.173(3) | ||
| Zn(1)-O(7) | 2.159(3) | Zn(1)-O(10) | 2.172(3) | ||
| Zn(1)-O(13) | 2.150(3) | Zn(1)-O(16) | 2.161(3) | ||
| Zn(2)-O(2) | 1.952(2) | Zn(2)-O(5) | 1.967(2) | ||
| Zn(2)-O(8) | 1.934(2) | Zn(2)-O(19) | 1.985(2) | ||
| Zn(3)-O(11) | 1.9617(18) | Zn(3)-O(14) | 1.940(2) | ||
| Zn(3)-O(17) | 1.948(2) | Zn(3)-O(20) | 1.985(2) | ||
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| O(1)-Zn(1)-O(4) | 87.06(9) | O(7)-Zn(1)-O(1) | 89.52(9) | ||
| O(7)-Zn(1)-O(4) | 90.31(9) | O(7)-Zn(1)-O(10) | 90.45(9) | ||
| O(7)-Zn(1)-O(16) | 89.71(9) | O(10)-Zn(1)-O(4) | 92.96(9) | ||
| O(13)-Zn(1)-O(1) | 89.69(9) | O(13)-Zn(1)-O(4) | 89.75(9) | ||
| O(13)-Zn(1)-O(10) | 90.35(9) | O(13)-Zn(1)-O(16) | 90.23(9) | ||
| O(16)-Zn(1)-O(1) | 92.74(9) | O(16)-Zn(1)-O(10) | 87.23(8) | ||
| O(1)-Zn(1)-O(10) | 179.96(11) | O(13)-Zn(1)-O(7) | 179.20(10) | ||
| O(16)-Zn(1)-O(4) | 179.80 (11) | O(2)-Zn(2)-O(5) | 114.81(10) | ||
| O(2)-Zn(2)-O(19) | 99.26(11) | O(5)-Zn(2)-O(19) | 105.43(11) | ||
| O(8)-Zn(2)-O(2) | 122.91(10) | O(8)-Zn(2)-O(5) | 115.08(9) | ||
| O(8)-Zn(2)-O(19) | 92.69(10) | O(11)-Zn(3)-O(20) | 99.53(10) | ||
| O(14)-Zn(3)-O(11) | 123.27(10) | O(14)-Zn(3)-O(17) | 113.34(10) | ||
| O(14)-Zn(3)-O(20) | 97.72(10) | O(17)-Zn(3)-O(11) | 115.20(9) | ||
| O(17)-Zn(3)-O(20) | 107.00(10) | ||||
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| O(1)-Cg(1)-Cg(2)-O(13) | 59.10 | O(7)-Cg(1)-Cg(2)-O(16) | 58.88 | ||
| O(4)-Cg(1)-Cg(2)-O(10) | 61.49 | ||||
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| O(19)-H(19)O···O(3W) | 0.845(19) | 1.861(19) | 2.536(4) | 135.8(17) | |
| O(20)-H(20)O···O(2W) | 0.83(2) | 1.76(2) | 2.585(4) | 174(4) | |
| O(3W)-H(3WO)···O(4W) | 0.84 | 1.91 | 2.669(4) | 149 | |
| O(2W)-H(2WO)···O(1W) | 0.84 | 2.01 | 2.683(3) | 136 | |
| O(4W)-H(4WO)···O(6) | 0.84 | 1.85 | 2.685(4) | 175 | |
| O(1W)-H(1WO)···O(18) | 0.84 | 1.88 | 2.712(4) | 172 | |
| C(31)-H(31)···O(4W) | 0.95 | 2.54 | 3.481(5) | 172 | |
| C(53)-H(53)···O(1W) | 0.95 | 2.52 | 3.460(5) | 172 | |
| C(4W)-H(4WA)···O(20) | 0.98 | 2.61 | 3.418(7) | 140 | |
| C(4W)-H(4WB)···O(2) | 0.98 | 2.63 | 3.502(6) | 148 | |
| C(7W)-H(7WB)···Cg(3) | 0.99 | 2.97 | 3.954(7) | 172 | |
| C(20)-H(20)···Cg(4) | 0.95 | 2.88 | 3.674(4) | 142 | |
| C(60)-H(60)···Cg(5) | 0.95 | 2.90 | 3.705(4) | 143 | |
| C(69)-H(69B)···Cg(4) | 0.99 | 2.69 | 3.611(4) | 155 | |
| C(67)-H(67A)···Cg(5) | 0.99 | 2.85 | 3.703(4) | 145 | |
| Cg(1) = O(1) O(4) O(7); Cg(2) = O(10) O(13) O(16); Cg(3) = C(15) C(16) C(17) C(18) C(19) C(20); Cg(4) = C(4) C(5) C(6) C(7) C(8) C(9); Cg(5) = C(37) C(38) C(39) C(40) C(41) C(42) | |||||
Figure 5(a) In detail view of the C-H···N and C-H···O interactions of 2·4CH3CN between the two types of co-crystallized acetonitrile molecules (highlighted in green and purple) and the trinuclear units which expand the structure along the c axis. (b) In detail view of the C-H···π and π··· π interactions which contribute to the formation of the bc plane. (c) General view of the resulting plane along the bc axes due to the C-H···O and the planar interactions. The phenyl, pyridyl, and other atoms which do not participate in any of the mentioned interactions have been omitted for clarity.
Figure 6(a) In detail view of the H-bonds, C-H···O and planar interactions of complex 3·4EtOH. (b) General view of the supramolecular 2D plane formed along the bc axes. The different types of co-crystallized EtOH molecules have been highlighted in different colors and the phenyl, pyridyl, and other atoms which do not participate in any of the mentioned interactions have been omitted for clarity.
Figure 7(a) Hirshfeld surface dnorm representations, (b) 2D fingerprint plot highlighting the intermolecular interactions, and (c) graphical summary of the percentage of each contact involved in the Hirshfeld surface of 2·4CH3CN.
Figure 8(a) Hirshfeld surface dnorm representations, (b) 2D fingerprint plot highlighting the intermolecular interactions, and (c) graphical summary of the percentage of each contact involved in the Hirshfeld surface of 3·4EtOH.
Comparison of the supramolecular interactions of compounds 2·4CH3CN and 3·4EtOH.
| Complex | D-H···A | Number of Interactions | % Hirshfeld Surface Implied |
|---|---|---|---|
| C-H···Nsolvent | 2 | 6.0 | |
| C-H···OC=O | 4 | 7.9 | |
| C-H···π | 4 | 28.1 | |
| π ··· π | 4 | 2.9 | |
| O-H···Osolvent | 2 | 12.3 | |
| OC=O···H-Osolvent | 2 | ||
| C-H···Osolvent | 2 | ||
| C-Hsolvent···OCOO | 1 | ||
| C-Hsolvent···Ocoordinated EtOH | 1 | ||
| C-H··· π | 5 | 20.4 |
Figure 9Electrostatic Surface Potential (ESP) surfaces highlighting the electropositive (blue) and electronegative (red) regions over the range ±0.03 au for complexes: (a) 2·4CH3CN and (b) 3·4EtOH.
Crystal data and structure refinement for 1, 2·4CH3CN, and 3·4EtOH.
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| Empirical Formula | C66H58N6O12Zn2 | C96H90N12O18Zn3 | C78H96N6O24Zn3 |
| Formula weight | 1257.92 | 1895.90 | 1697.71 |
| T (K) | 293(2) | 100(2) | 100(2) |
| Wavelength (Å) | 0.71073 | 0.71073 | 0.71073 |
| System, space group | Monoclinic, P21/c | Monoclinic, P21/c | Monoclinic, P21 |
| Unit cell dimensions | |||
| a (Å) | 10.1338(8) | 15.7748(10) | 13.2110(4) |
| b (Å) | 24.469(2) | 23.7227(15) | 24.9706(9) |
| c (Å) | 25.598(2) | 13.1019(8) | 13.3721(4) |
| β (°) | 111.681(4) | 112.111(2) | 113.6880(10) |
| V (Å3) | 5898.3(8) | 4542.4(5) | 4039.6(2) |
| Z | 4 | 2 | 2 |
| Dcalc (mg/m3) | 1.417 | 1.386 | 1.396 |
| µ (mm−1) | 0.883 | 0.861 | 0.962 |
| F (000) | 2608 | 1968 | 1776 |
| Crystal size (mm−3) | 0.141×0.052×0.032 | 0.150×0.368×0.398 | 0.142×0.252×0.505 |
| hkl ranges | −11 <= h <= 14, −34 <= k <= 34, −36 <= l <= 36 | −21 <= h <= 22, −33 <= k <= 33, −18 <= l <= 17 | −19 <= h <= 19, −36 <= k <= 36, −19 <= l <= 19 |
| 2θ range (°) | 2.176 to 30.705 | 2.211 to 30.554 | 2.452 to 30.972 |
| Reflections collected/ | 80518/18035/ 0.2023 | 141282/13913/ 0.0604 | 25525/25525/ 0.0421 |
| Completeness to θ (%) | 98.4 | 99.8 | 99.7 |
| Absorption correction | Semi-empirical | Semi-empirical | Semi-empirical |
| Max. and min. transmission | 0.7461 and 0.6289 | 0.7461 and 0.6411 | 0.7461 and 0.6349 |
| Refinement method | Full-matrix least-square on F2 | Full-matrix least-square on F2 | Full-matrix least-square on F2 |
| Data/Restrains/Parameters | 18035/0/780 | 13913/0/588 | 25525/17/1016 |
| Goodness-on-fit on F2 | 1.038 | 1.043 | 1.032 |
| Final R indices [I > 2σ(I)] | R1 = 0.0756 | R1 = 0.0442 | R1 = 0.0348 |
| R indices (all data) | R1 = 0.2135 | R1 = 0.0639 | R1 = 0.0473 |
| Extinction coefficient | n/a | n/a | n/a |
| Largest Diff. peak and hole (e. Å−3) | 0.986 and −1.239 | 0.538 and −2.492 | 0.726 and −1.656 |