| Literature DB >> 32778712 |
Matheus Sampaio C Barreto1,2, Evert J Elzinga3, Luís Reynaldo F Alleoni4.
Abstract
Proteins are of ubiquitous interest in the LiEntities:
Mesh:
Substances:
Year: 2020 PMID: 32778712 PMCID: PMC7417568 DOI: 10.1038/s41598-020-70201-z
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Process of kinetic data analysis: (A) Raw data of BSA adsorption kinetic experiment collected between 1 min (bottom black line) and 120 min (top red line) of reaction time. (B) Individual spectrum of the 120 min spectrum. (C) Double baseline fit of the Amide I and II band in the 120 min spectrum. The Amide II band area was integrated and is presented in Fig. 4. (D) The Amide I band was deconvoluted into Gaussian curves at peak position initially determined by the 2nd derivative spectrum of the original data, which is shown in panel (E).
Figure 4(A) Adsorption for BSA adsorption onto hematite over NaCl concentration at pH = 5 and [BSA] = 1 µM L–1. (B) Secondary structure proportion of adsorbed BSA on hematite. See the corresponding structural form in relation to wavenumber peak in Table 1. Dotted line represents the BSA concentration used to kinetic experiment.
Vibrational frequencies (cm–1) of the absorption bands associated with secondary structure conformation of BSA in the Amide I region used for curve fitting.
| Secondary structure assignment | Vibrational frequency range (cm–1) | ||||
|---|---|---|---|---|---|
| Ref.[ | Ref.[ | Ref.[ | Ref.[ | Peak center found in this work | |
| β-Sheets/turns | 1685–1663 | 1690–1680 | 1690–1660 | 1690–1660 | 1676 |
| β-Sheets/turns | 1670–1662 | 1662 | |||
| α-Helix | 1655–1650 | 1655–1650 | 1660–1650 | 1655–1650 | 1652 |
| Random coil | 1648–1644 | 1645–1642 | 1648–1644 | 1648–1644 | 1644 |
| Extended chains/β-sheets/short-segment chains connecting the α-helical segment2 | – | 1638–1632 | 1640–1630 | – | 1637 |
| Extended chains/β-sheets, Aggregated strands | 1639–1621 | 1620–1610 | 1630–1620 | 1640–1620 | 1628 |
| Side chain moieties | 1616–1600 | – | 1620–1600 | 1612 | |
aThe authors used D2O solution, Refs.[41,42].
Figure 2(A) Raw IR spectra of aqueous BSA (15 mM L–1) collected over the pH range from 8.7 (top black line) to 4 (bottom red line) in 10 mM L–1 NaCl. The amide bands are located in the yellow-highlighted spectral region indicated by asterisk (B) Zoom-in of the spectral region containing the Amide I and II bands. Water IR absorption (υ2 H2O) at 1644 cm–1 overlaps with the Amide I band (1700–1600 cm–1) but not with amide II. (C) Relative band intensities as a function of pH indicate Secondary structure proportion of free aqueous-BSA at pH 7, 6, 5, and 4. See the corresponding structural assignments in relation to wavenumber peak in the Table 1.
Figure 3(A) Adsorption for BSA adsorption onto hematite over BSA concentration at pH = 5 and [NaCl] = 10 mM L–1. (B) Secondary structure proportion of adsorbed BSA on hematite. See the corresponding structural form in relation to wavenumber peak in Table 1. Dotted line represents the BSA concentration used to kinetic experiment.
Figure 5Amide II area of adsorbed-BSA over the time. Pseud-first order kinetic models for each pH are drawer by dashed lines of corresponding color. The [BSA] = 1 µM L–1 in electrolytic background (ionic strength) as [NaCl] = 10 mM L–1. The equation parameters are listed in Table 2.
Pseudo-first order kinetic parameters for BSA adsorption and desorbed fraction for each pH value.
| pH | AmideIImax [peak area (A.U.2)] | R2 | Reduced χ2 | Desorption (%) | |
|---|---|---|---|---|---|
| 7 | 2.99 | 0.119 | 0.88 | 0.14 | 1 |
| 6 | 3.53 | 0.109 | 0.95 | 0.06 | 5 |
| 5 | 3.70 | 0.114 | 0.96 | 0.07 | 10 |
| 4 | 1.79 | 0.164 | 0.91 | 0.02 | 3 |
Figure 6Secondary structure proportion shifts of adsorbed BSA on hematite surface over the kinetic time in different pH values. At 150 min (*) represents the secondary conformation of BSA remained after desorption process. Dotted lines of the corresponding color represent the mean secondary structural composition acquired of free aqueous-BSA in to pH variations. See details in Fig. 2.