Association of the mir-499 polymorphisms with oral cavity and oropharyngeal squamous cell carcinoma in an Iranian population.

BACKGROUND: Oral squamous cell carcinoma (SCC) is the most common oral malignancy. Some evidence indicated that there is a correlation between microRNA single nucleotide polymorphisms and the risk of oral cancer. The aim of the current study was to investigate the association between mir-499 polymorphism with the risk of oral cavity and oropharyngeal SCC in a subset of Iranian Population.
MATERIALS AND METHODS: In this case-control pilot study total of 112 participants including 56 histopathlogically confirmed oral and oropharyngeal SCC patients and 56 age- and sex-matched controls were included The mir-499 rs3746444 T/C polymorphism was detected using polymerase chain reaction-restriction fragment length polymorphism method. The comparisons of the distribution of the allele and genotype frequencies were performed using Chi-square test, and P < 0.05 was considered as statistically significant.
RESULTS: The result of the present study indicated that the frequency distribution of mir-499 was not significantly different between cases and controls (P > 0.05). We also did not find any significant association between the risk of the cancer and mir-499 polymorphisms in the recessive (Odds ratio [OR]: 6.60; 95% confidence interval [CI]: 0.77-56.74; P = 0.11) and dominant (OR: 1; 95% CI: 0.37-2.74; P = 1) inheritance models even after adjustment for smoking.
CONCLUSION: The results of the present study indicated that the polymorphisms of mir-499 are not associated with the risk of oral and oropharyngeal SCC in Iranian population. However, further large scale studies are needed to validate our findings. Copyright:

INTRODUCTION

Head and neck cancers (HNCs) represent the sixth most common cancer in the world with more than 600,000 new patients diagnosed annually and a 5-year survival rate of 40%–50%.[12] It has been estimated that squamous cell carcinoma (SCC) of the head and neck SCC (HNSCC) originating from mucosal surfaces of the oral cavity, oropharynx, and larynx accounts for more than 90% of HNCs.[1] The etiology of HNSCC has been considered to be multifactorial with cigarette smoking, alcohol use, and human papillomavirus as its three main predictors.[3456] There is a geographic variability in the incidence of HNSCC which is possibly related to demographic and lifestyle differences.[6] A higher incidence of the disease has been observed in South-East Asia, Pacific regions, Latin America, and some parts of Central and Eastern Europe.[7]

Some evidence suggested that there is a correlation between genetic susceptibility and the risk of HNSCC. It has been reported that the risk of HNSCC in the first-degree relatives of patients with the disease is about two times higher than general population.[89] Moreover, only a small proportion of people exposed to HNSCC risk factors develop the disease.[10] In recent years, a great deal of attention devoted to the study of molecular mechanisms contributing to the etiology of this cancer.

MicroRNAs are small, noncoding RNAs playing an important role in several biological processes including cell proliferation, differentiation, cell cycle progression, and apoptosis.[111213] Recently, accumulated evidence revealed that single nucleotide polymorphisms (SNPs) of microRNAs are associated with the risk of some cancers.[14151617181920] It has been reported that SNPs occurring in microRNAs lead to occurrence of malignancies through affecting microRNA biogenesis, stability of mature microRNA molecules, efficiency of target gene regulation, and the specificity of targets.[21]

Mir-499 is a microRNA which involves in posttranscriptional gene regulation. A number of reports have indicated that there is an association between mir-499 polymorphism and the risk of many cancers such as lung cancer, breast cancer, gastric cancer, and HNC.[22232425] It has been suggested that miR-499 polymorphism increases the risk of breast and prostate cancer among Iranians.[2627] However, we could not find any study that has assessed the association between the polymorphism of this gene and the risk of oral cancers in the population.

Considering the high prevalence of cancer in developing countries and the lack of evidence regarding the association between microRNA polymorphism and oral cancers, we designed the current study to explore the association between mir-499 polymorphism and oral cavity and oropharyngeal SCC in a subset of Iranian population.

MATERIALS AND METHODS

Subjects

This case–control pilot study was approved by ethics committee of Islamic Azad University, Isfahan (Khorasgan) branch, Isfahan, Iran (Research number: 23810201951011), and informed consent was obtained from all participants after a full description of the study objectives. Study participants were recruited from Al-Zahra and Sayed-al-Shohada hospitals, affiliated to Isfahan University of Medical Sciences, Isfahan, Iran. All adult patients between 30 and 70 years with a histopathologically confirmed diagnosis of oral and oropharyngeal SCC were defined as cases. The control group consisted of patients without a history of cancer who were matched with case patients for age and sex. All patients with cervical metastases of unknown origin, primary tumors outside the upper aerodigestive tract, and primary tumors of the nasopharynx, larynx, hypopharynx, and sinonasal tract were excluded from the study. A self-administered researcher-made questionnaire was used to collect individuals' demographics and smoking habits.

DNA extraction and genotyping

A 2.5 mL sample of whole blood was collected from each individual. Genomic DNA was extracted using commercial DNA Extraction kit (Iraizol#1004; RNA Biotechnology Company, Isfahan, Iran) according to the manufacturer's instructions.

The mir-499 rs3746444 T/C polymorphism was detected using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. The polymorphism is situated in the stem region opposite to the mature miR-499 sequence, resulting in a change from A:U pair to G:U mismatch in the stem structure of miR-499 precursor.[28]

The primers used for amplification of the microRNA were 5'-CAAAGTCTTCACTTCCCTGCCA-3' and 5'-GATTTTAACTCCTCTCCACGTGATC-3'. Twenty-five microliters of the PCR reaction system consisted of 12.5 μl Taq 2X Master Mix with 1.5 mM MgCl2 (AMPLIQON# 5200300-A180303; Denmark), 10 μM of each BsmI-F and BsmI-R primers, and 10 ng genomic DNA. The cycling condition comprised an initial denaturation at 95°C for 5 min, followed by 35 cycles of amplification at 95°C for 30 s, 62°C for 30 s, and 72°C for 30 s, with an elongation step at 72°C for 7 min. The PCR products were then digested by Bcl I (Catalog # R0160S, NEW ENGLAND BioLabs) and separated in a 3% agarose gel. Homozygous C/C alleles of mir-499 were represented by a DNA band with a size of 146 bp, and the homozygous T/T alleles were represented by DNA bands with sizes of 120 and 26 bp. Heterozygotes C/T displayed a combination of the alleles (146, 120, and 26 bp).

Statistical analysis

The comparisons of the distribution of the allele and genotype frequencies were performed using Chi-square test. The Statistical Package for Social Sciences version 20.0 (SPSS Inc., Chicago, IL, USA) was used to calculate the Chi-square value. P < 0.05 was considered as statistically significant.

RESULTS

A total of 112 participants were recruited for the study comprising 56 case patients and 56 age- and sex-matched controls. Characteristics of the study population are presented in Table 1. There was a significant difference between cases and controls in terms of smoking (P < 0.001).

Table 1

Basic characteristics of cases and matched controls

Variables	Case (n=56), n (%)	Control (n=56), n (%)	P
Age*
Sex
Male	39 (69.6)	39 (69.6)	1.00
Female	17 (30.4)	17 (30.4)
Smoking status
Yes	23 (41.1)	4 (7.1)	<0.001
No	33 (58.9)	52 (92.9)

*The variable is presented as mean±SD. SD: Standard deviation

The genotypes and allele frequencies of mir-499 polymorphisms in cases and controls are summarized in Table 2. There was no significant difference between case and control groups in terms of mir-499 genotypes. We did not find any significant differences between cases and controls in terms of mir-499 polymorphisms in the recessive (Odds ratio [OR]: 6.60; 95% confidence interval [CI]: 0.77–56.74; P = 0.11) and dominant (OR: 1; 95% CI: 0.37–2.74; P = 1) inheritance models. Our findings also indicated that there was no significant association between mir-499 genotypes and the risk of cancer after adjustment for smoking suggesting no confounding by smoking [Table 2].

Table 2

Genotype and allelic frequencies of miR499 rs3746444 variants polymorphisms in case and controls

38 polymorphisms	Control (n=56), n (%)	Case (n=56), n (%)	OR (95%CI)	Adjusted OR	P
Codominant
TT	9 (16.1)	9 (16.1)	1	1
CT	46 (82.1)	41 (73.2)	0.89 (0.32-2.46)	0.68 (0.22-2.15)	0.19
CC	1 (1.8)	6 (10.7)	6 (0.60-60.44)	5.30 (0.42-66.56)
Recessive
TT + CT	50 (89.3)	55 (98.2)	1	1	0.11
CC	6 (10.7)	1 (1.8)	6.60 (0.77-56.74)	7.24 (0.69-75.43)
Dominant
CC + CT	47 (83.9)	47 (83.9)	1	1	1.00
TT	9 (16.1)	9 (16.1)	1 (0.37-2.74)	1.29 (0.41-4.02)
Allele
C	53 (47.3)	48 (42.9)	1	1	0.50
T	59 (52.7)	64 (57.1)	1.19 (0.71-2.03)	1.13 (0.63-2)

OR: Odds ratio; CI: Confidence interval

DISCUSSION

In the present study, we investigated the association between mir-499 polymorphism and the risk of oral cavity and oropharyngeal SCC. A number of studies have suggested the association between mir-499 polymorphism and the susceptibility to some kind of cancers. Hashemi et al. reported an association between the risk of prostate cancer and mir-499 polymorphism among the Iranian population.[26] Omrani et al. also suggested that the gene polymorphism both in recessive and dominant inheritance models is associated with a higher risk of breast cancer in Iranian individuals.[27] The result of the study by Wang et al. showed that mir-499 A > G polymorphism is associated with increased risk of hepatocellular carcinoma.[29] However, Zhang et al. did not find any association between the risk of hepatocellular carcinoma and the polymorphism in the gene.[30] The study on Greek population by Dikaiakos et al. also did not find any association between the risk of colorectal cancer and mir-499 polymorphism.[31] The results of several meta-analyses and systematic review studies have also indicated that the polymorphism of mir-499 can increase the risk of some cancers, especially among Asians.[3233]

Recently, a limited number of studies have assessed the association between mir-499 polymorphism and the risk of oral cancer; although, there is not any consensus between the results of these studies. In the present study, we did not find any association between mir-499 polymorphism and the risk of oral and oropharyngeal cancer. Hou et al. reported that there is an inverse association between the risk of oral SCC and mir-499 polymorphism.[34] It has also been reported that mir-499 polymorphism was associated with a decreased risk of SCC of the head and neck among non-Hispanic white population.[25] On the contrary, the result of a study by Zhang et al. showed that miR-499 polymorphism contributes to genetic susceptibility to oral SCC. According to the results of this study, people with CC genotype had an increased risks of oral cancer compared to those with wild TT genotype.[35] Tandon et al. in a study on Indian population found that genetic polymorphisms of miR-499 contribute to the risk of oral SCC.[36] The discrepancies in the results of these studies are possibly due to differences in studied populations and sample size. Surprisingly, it has also been suggested that the interaction between microRNAs genetic polymorphism and environmental risk factors is associated with an increased risk of oral cancer.[19] Thus, it is of great importance to investigate the role of mir-499 polymorphism in the pathogenesis of oral cancer in combination with other possible risk factors. Our study contains several limitations comprising small sample size and lack of information on confounding variables such as alcohol and tobacco use. As a result, there is a need to do further studies among Iranian population with the consideration of possible confounders.

CONCLUSION

In summary, we did not find any association between genetic polymorphism of mir-499 and the risk of oral cavity and oropharyngeal SCC. Further, large-scale studies among Iranian population are warranted to explore the association between microRNAs polymorphisms and underlying mechanisms.

Financial support and sponsorship

Nil.

Conflicts of interest

The authors of this manuscript declared that they have no conflicts of interest, real or perceived, and financial or non-financial in this article.