Literature DB >> 32766637

Atomistic simulations of the aggregation of small aromatic molecules in homogenous and heterogenous mixtures.

Michael Thomas1, Irene Suarez-Martinez, Li-Juan Yu, Amir Karton, Graham S Chandler, Marc Robinson, Isabelle Cherchneff, Dahbia Talbi, Dino Spagnoli.   

Abstract

The relatively weak London dispersion forces are the only interactions that could cause aggregation between simple aromatic molecules. The use of molecular dynamics and high-level ab initio computer simulations has been used to describe the aggregation and interactions between molecular systems containing benzene, naphthalene and anthracene. Mixtures containing one type of molecule (homogenous) and more than one type of molecule (heterogenous) were considered. Our results indicate that as molecular weight increases so does the temperature at which aggregation will occur. In all simulations, the mechanism of aggregation is through small clusters coalescing into larger clusters. The structural analysis of the molecules within the clusters reveals that benzene will orient itself in T-shaped and parallel displaced configurations. Molecules of anthracene prefer to orient themselves in a similar manner to a bulk crystal with no T-shaped configuration observed. The aggregation of these aromatic molecules is discussed in the context of astrochemistry with particular reference to the dust formation region around stars.

Entities:  

Year:  2020        PMID: 32766637      PMCID: PMC7610640          DOI: 10.1039/d0cp02622k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  10 in total

1.  Estimates of the ab initio limit for pi-pi interactions: the benzene dimer.

Authors:  Mutasem Omar Sinnokrot; Edward F Valeev; C David Sherrill
Journal:  J Am Chem Soc       Date:  2002-09-11       Impact factor: 15.419

2.  Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals-Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions.

Authors:  Lars Goerigk; Stefan Grimme
Journal:  J Chem Theory Comput       Date:  2010-12-23       Impact factor: 6.006

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy.

Authors:  Florian Weigend; Reinhart Ahlrichs
Journal:  Phys Chem Chem Phys       Date:  2005-08-04       Impact factor: 3.676

5.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

6.  A new insight into π-π stacking involving remarkable orbital interactions.

Authors:  Rundong Zhao; Rui-Qin Zhang
Journal:  Phys Chem Chem Phys       Date:  2016-09-14       Impact factor: 3.676

7.  Carbon molecules in space: from astrochemistry to astrobiology.

Authors:  Pascale Ehrenfreund; Mark A Sephton
Journal:  Faraday Discuss       Date:  2006       Impact factor: 4.008

8.  Reactive polycyclic aromatic hydrocarbon dimerization drives soot nucleation.

Authors:  M R Kholghy; G A Kelesidis; S E Pratsinis
Journal:  Phys Chem Chem Phys       Date:  2018-04-25       Impact factor: 3.676

9.  On the mechanism of soot nucleation.

Authors:  Michael Frenklach; Alexander M Mebel
Journal:  Phys Chem Chem Phys       Date:  2020-03-04       Impact factor: 3.676

10.  CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields.

Authors:  K Vanommeslaeghe; E Hatcher; C Acharya; S Kundu; S Zhong; J Shim; E Darian; O Guvench; P Lopes; I Vorobyov; A D Mackerell
Journal:  J Comput Chem       Date:  2010-03       Impact factor: 3.376

  10 in total

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