Literature DB >> 32761039

Decoupling between the translation and rotation of water in the proximity of a protein molecule.

Pan Tan1, Juan Huang2, Eugene Mamontov3, Victoria García Sakai4, Franci Merzel5, Zhuo Liu1, Yiyang Ye6, Liang Hong1.   

Abstract

The interaction between water and biomacromolecules is of fundamental interest in biophysics, biochemistry and physical chemistry. By combining neutron scattering and molecular dynamics simulations on a perdeuterated protein at a series of hydration levels, we demonstrated that the translational motion of water is slowed down more significantly than its rotation, when water molecules approach the protein molecule. Further analysis of the simulation trajectories reveals that the observed decoupling results from the fact that the translational motion of water is more correlated over space and more retarded by the charged/polar residues and spatial confinement on the protein surface, than the rotation. Moreover, around the stable protein residues (with smaller atomic fluctuations), water exhibits more decoupled dynamics, indicating a connection between the observed translation-rotation decoupling in hydration water and the local stability of the protein molecule.

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Year:  2020        PMID: 32761039     DOI: 10.1039/d0cp02416c

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

1.  Hydration Dynamics of Model Peptides with Different Hydrophobic Character.

Authors:  Laura Lupi; Brenda Bracco; Paola Sassi; Silvia Corezzi; Assunta Morresi; Daniele Fioretto; Lucia Comez; Marco Paolantoni
Journal:  Life (Basel)       Date:  2022-04-12

2.  Motion of water monomers reveals a kinetic barrier to ice nucleation on graphene.

Authors:  Anton Tamtögl; Emanuel Bahn; Marco Sacchi; Jianding Zhu; David J Ward; Andrew P Jardine; Stephen J Jenkins; Peter Fouquet; John Ellis; William Allison
Journal:  Nat Commun       Date:  2021-05-25       Impact factor: 14.919

3.  Universal dynamical onset in water at distinct material interfaces.

Authors:  Lirong Zheng; Zhuo Liu; Qiang Zhang; Song Li; Juan Huang; Lei Zhang; Bing Zan; Madhusudan Tyagi; He Cheng; Taisen Zuo; Victoria García Sakai; Takeshi Yamada; Chenxing Yang; Pan Tan; Fan Jiang; Hao Chen; Wei Zhuang; Liang Hong
Journal:  Chem Sci       Date:  2022-03-28       Impact factor: 9.825

4.  New insights into the microscopic interactions associated with the physical mechanism of action of highly diluted biologics.

Authors:  Kristina N Woods
Journal:  Sci Rep       Date:  2021-07-02       Impact factor: 4.379

5.  Experimental demonstration of the novel "van-Hove integral method (vHI)" for measuring diffusive dynamics by elastic neutron scattering.

Authors:  Antonio Benedetto; Gordon J Kearley
Journal:  Sci Rep       Date:  2021-07-08       Impact factor: 4.379

6.  The Structural and Dynamical Properties of the Hydration of SNase Based on a Molecular Dynamics Simulation.

Authors:  Hangxin Liu; Shuqing Xiang; Haomiao Zhu; Li Li
Journal:  Molecules       Date:  2021-09-05       Impact factor: 4.411

  6 in total

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