Literature DB >> 32760107

Clinical, radiological and therapeutic characteristics of patients with COVID-19 in Saudi Arabia.

Mohammed Shabrawishi1,2, Manal M Al-Gethamy3, Abdallah Y Naser4, Maher A Ghazawi5, Ghaidaa F Alsharif2, Elaf F Obaid2, Haitham A Melebari6, Dhaffer M Alamri3, Ahmad S Brinji5, Fawaz H Al Jehani7, Wail Almaimani7, Rakan A Ekram8, Kasim H Alkhatib9, Hassan Alwafi10.   

Abstract

BACKGROUND: Coronavirus disease 2019 (COVID-19) is a rapidly spreading global pandemic. The clinical characteristics of COVID-19 have been reported; however, there is limited research investigating the clinical characteristics of COVID-19 in the Middle East. This study aims to investigate the clinical, radiological and therapeutic characteristics of patients diagnosed with COVID19 in Saudi Arabia.
METHODS: This study is a retrospective single-centre case series study. We extracted data for patients who were admitted to the Al-Noor Specialist Hospital with a PCR confirming SARS-COV-2 between 12th and 31st of March 2020. Descriptive statistics were used to describe patients' characteristics. Continuous data were reported as mean ± SD. Chi-squared test/Fisher test were used as appropriate to compare proportions for categorical variables.
RESULTS: A total of 150 patients were hospitalised for COVID-19 during the study period. The mean age was 46.1 years (SD: 15.3 years). The most common comorbidities were hypertension (28.8%, n = 42) and diabetes mellitus (26.0%, n = 38). Regarding the severity of the hospitalised patients, 105 patients (70.0%) were mild, 29 (19.3%) were moderate, and 16 patients (10.7%) were severe or required ICU care.
CONCLUSION: This case series provides clinical, radiological and therapeutic characteristics of hospitalised patients with confirmed COVID-19 in Saudi Arabia.

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Year:  2020        PMID: 32760107      PMCID: PMC7410246          DOI: 10.1371/journal.pone.0237130

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


Introduction

In early December 2019, a cluster of acute pneumonia of unknown aetiology was identified in Wuhan, China [1]. The pathogen was identified as a new RNA virus from the betacoronavirus family and was named “severe acute respiratory syndrome coronavirus 2” (SARS-CoV-2) [1]. The respiratory illness caused by the 2019 novel coronavirus disease (COVID-19) is highly infectious [2], and therefore, the World Health Organization (WHO) has characterized the diseases as a pandemic infection [3]. As of April 25, 2020, more than 2,700,000 confirmed cases were reported worldwide, and it has spread from Wuhan to more than 200 countries across the world [4]. The Kingdom of Saudi Arabia (KSA) is the largest country in the Arabian Peninsula and it is located in the south west part of Asia [5]. In a historical decision, KSA has suspended Umrah and all religious visits to the country in an attempt to prevent and delay the spread of COVID-19 in KSA. On March 2, 2020, Saudi Arabia confirmed its first case of COVID-19, which was imported from Iran [4]. Several other local clusters were identified later, with the majority of the cases being linked to recent travel history. In recent studies, the clinical features and severity of COVID-19 have been described as being similar to other respiratory viruses such as severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) [6-8]. Symptoms can range from mild flu-like symptoms to acute respiratory distress syndrome (ARDS) [9]. However, the characteristics and the course of the disease in Middle Eastern populations remains unclear. Exploring the clinical characteristics of patients diagnosed with COVID-19 in Saudi Arabia is important, considering there are many visitors who travel to Saudi Arabia for religious purposes. Besides this, there is a high volume of air traffic for other purposes in this country, which was estimated to include around 39 million people in 2018. In 2019, around 7.5 million Muslim entered the holy city of Mecca for Umrah purposes [10]. This highlights how crucial it is to explore the characteristics of patients diagnosed with this infection, which is becoming increasingly widespread in the region. To address the aforementioned knowledge gaps, and given the ongoing spread of COVID-19 in the Middle East, this study aims to describe the clinical, radiological, and therapeutic characteristics of COVID-19 in a selected cohort of patients in Mecca, Saudi Arabia.

Methods

Study design and participants

This was a retrospective single-centre case series study of 150 patients diagnosed with COVID-19. We extracted data for patients who were admitted to Al-Noor Specialist Hospital with a polymerase chain reaction (PCR) confirming SARS-COV-2 between 12th and 31st of March 2020. Al-Noor Specialist Hospital in Mecca, Saudi Arabia, is a 500-bed specialist and teaching hospital in the centre of the holy city of Mecca. It delivers tertiary care throughout the Mecca region of Saudi Arabia and it is part of the Ministry of Health services [11, 12]. All patients enrolled in this study were diagnosed with COVID-19 through real time (RT)-PCR obtained through nasopharyngeal swabs, which were processed and validated through a regional lab. All data including outcomes, mortality and length of stay were monitored up to 8th April 2020.

Data collection

Data were extracted from both paper and electronic records using a unique medical record number (MRN) for each patient. All data were reviewed and checked by a medical team, including two medical residents and a consultant pulmonologist. Extracted data included patients’ demographics, comorbidities, history of recent travel and history of contact with a confirmed COVID19 patient in the past two weeks. In addition, clinical signs, symptoms, radiological findings and pharmacological treatment received were collected. The radiological examinations were interpreted by a certified consultant radiologist who was blinded from the clinical presentation of the patients. The severity assessment of the chest x-ray (CXR) was estimated subjectively. All data were collected at the time of the admission.

Study variables

Data regarding the clinical progression and severity of the disease were reported as the worst classification reached at any point during hospitalisation. We further classified the severity of the disease based on the following criteria: 1) mild disease was defined as patients with upper respiratory tract symptoms (such as rhinorrhoea, sore throat, headache, myalgia, body pain, low-grade fever and /or dry cough) with the absence of clinical or radiological findings of pneumonia; 2) moderate disease was defined as symptomatic patients with radiological signs of pneumonia; 3) severe disease was defined as confirmed COVID-19 pneumonia with any of the following respiratory rates: ≥30/min, blood oxygen saturation ≤93% at rest, PaO2/FiO2 ratio <300, lung infiltration >50% of the lung field, and 4) critically severe disease was defined as any of the following: respiratory failure which required invasive mechanical ventilation, shock, or organ failure which required admission to the intensive care unit.

Ethics

This study was approved by the institutional ethics board at the Ministry of Health in Saudi Arabia (No. H-02-K-076-0420-286). Patients were informed that their clinical data would be used for clinical or research purposes, while keeping all their personal information confidential. The need for informed consent was waived by the ethics committee.

Statistical analysis

Descriptive statistics were used to describe patients’ demographic characteristics, radiological findings, medication use, and comorbidities. Continuous data were reported as mean ± SD, and categorical data were reported as percentages (frequencies). Independent sample t test was used to compare the mean value for continuous variables. A Chi-squared test/Fisher test was used as appropriate to compare proportions for categorical variables. Logistic regression analysis was used to identify predictors of clinical characteristics. A confidence interval of 95% (p < 0.05) was applied to represent the statistical significance of the results and the level of significance was assigned as 5%. SPSS (Statistical Package for the Social Sciences) version 25.0 software (SPSS Inc.) was used to perform all statistical analysis.

Results

Patients’ clinical characteristics

Table 1 presents patients’ characteristics at presentation at the hospital. A total of 150 patients were hospitalised for COVID-19. The mean age was 46.1 years (SD: 15.3 years), and ranged between 11 and 87. Around 61.0% (n = 90) were males. Six patients (3.9%) reported working in the healthcare sector. The most common comorbidities were hypertension (28.8%, n = 42) and diabetes mellitus (DM) (26.0%, n = 38). The majority of the patients (56.0%; n = 84) were local residents. Around half of the patients (54.1%, n = 80) reported that they had a contact history with a traveller. In addition, the majority of the patients, 64.4% (n = 96), had a contact history with a COVID-19 patient. Regarding the severity of the hospitalised patients, 105 patients (70.0%) were mild, 29 (19.3%) were moderate, and 16 patients (10.7%) were severe or required ICU care. Of the 105 mild patients, around 31.3% (n = 47) were asymptomatic. Patients with comorbidities were more likely to have a severe outcome compared to other patients (p<0.05). Patients who reported a contact history with a COVID-19 patient were more likely to have mild to moderate severity of the disease (p<0.05). Mild cases were more prevalent among females, while moderate to severe and or critical were prevalent among males (Fig 1).
Table 1

Patients demographic characteristics at presentation.

DemographicsAll patients (n = 150)Mild cases (n = 105)Moderate cases (n = 29)Severe/Intensive care unit cases (n = 16)P-value
Age (years; mean (SD))46.1 years (15.3)45.4 years (±16.0)46.7 years (±12.1)49.8 years (±15.7)0.550
Gender
Female No. (%)60 (40.0)47 (44.8)10 (34.5)3 (18.8)0.112
Healthcare worker
Yes No. (%)6 (4.0)6 (5.8)000.110
Place of residency No. (%)
Kingdom of Saudi Arabia84 (56.0)57 (54.3)15 (51.7)12 (75.0)0.084
Other countries66 (44.0)48 (45.7)14 (48.3)4 (25.0)0.239
Comorbidities No. (%)
Hypertension42 (28.8)29 (27.6)10 (35.7)3 (23.1)0.627
Diabetes mellitus38 (26.0)20 (19.0)11 (39.3)7 (53.8)0.005**
Coronary artery disease11 (7.5)5 (4.8)3 (10.7)3 (23.1)0.094
Renal disease10 (6.8)5 (4.8)1 (3.6)4 (30.8)0.018*
Thyroid gland problem (hypothyroidism)94 (8.2)2 (11.1)3 (37.5)0.123
Asthma4 (2.7)3 (2.9)01 (7.7)0.306
Cancer2 (1.4)002 (15.4)0.007**
CVA1 (0.7)1 (1.0)000.718
COPD1 (0.7)001 (7.7)0.086
CLD1 (0.7)001 (7.7)0.086
Tracing history No. (%)
Recent travel history (Yes) No. (%)65 (43.9)47 (45.6)14 (48.3)4 (25.0)0.263
Contact with traveller (Yes) No. (%)80 (54.1)57 (55.3)18 (62.1)5 (31.3)0.124
Contact with COVID-19 patient (Yes) No. (%)96 (64.4)71 (68.3)20 (69.0)5 (31.3)0.013*
Outcome (n = 148) No. (%)
Deceased4 (2.7)2 (1.9)02 (12.5)0.086
Improved47 (31.8)37 (35.2)6 (22.2)4 (25.0)0.358
Not recovered3 (2.0)2 (1.9)1 (3.7)00.615
Recovered94 (63.5)64 (61.0)20 (74.1)10 (62.5)0.434

Abbreviations; COVID-19: coronavirus disease-2019; CVA: cerebrovascular accident; COPD: chronic obstructive pulmonary disease; CLD: chronic liver disease; SD: Standard deviation; No: Number (frequency)

Fig 1

Clinical severity stratified by gender.

Abbreviations; COVID-19: coronavirus disease-2019; CVA: cerebrovascular accident; COPD: chronic obstructive pulmonary disease; CLD: chronic liver disease; SD: Standard deviation; No: Number (frequency) For symptomatic patients, the most common symptoms at presentation were fever (49.3%, n = 72), dry cough (48.6%, n = 71), and shortness of breath (19.9%, n = 29) (Table 2). Furthermore, during admission, fever and cough (28%) were the most common symptoms followed by nausea and vomiting (12%). Most of the asymptomatic patients were females (OR: 0.45 [95%CI 0.22–0.92]; p = 0.027). In addition, patients who reported travel history or contact with a traveller recently were three times (OR: 3.13 [95%CI 1.52–6.45]; p = 0.002) and four times (OR: 4.03 [95%CI 1.84–8.81]; p = 0.000) more likely to be asymptomatic, respectively. Besides, patients who reported contact with COVID-19 patients were four times more likely to be symptomatic (OR: 4.50 [95%CI 1.84–10.99]; p = 0.001).
Table 2

Patient signs and symptoms at presentation and during admission.

VariableSymptomsP-vale
At presentation No. (%)During admission No. (%)
Fever72 (49.3)28 (19.2)0.029*
Cough71 (48.6)28 (19.2)0.024*
Shortness of breath29 (19.9)7 (4.8)0.000***
Sore throat24 (16.4)2 (1.4)0.269
Runny nose9 (6.2)0 (0.0)>0.99
Sputum5 (3.4)1 (0.7)0.034*
Headache4 (2.7)0 (0.0)>0.99
Myalgia4 (2.7)1 (0.7)0.813
Diarrhea2 (1.4)5 (3.4)0.068
Nausea/vomiting1 (0.4)12 (8.2)0.678
Haemoptysis1 (0.4)1 (0.7)0.887
Fatigue1 (0.4)1 (0.7)0.907

* p<0.05

**p<0.01

***p<0.000

* p<0.05 **p<0.01 ***p<0.000

Radiological findings

Around half of the patients (49.7%, n = 72) had a normal radiological exam at presentation. The severity of the cases was correlated with an increase in the prevalence of GGO at presentation (P = 0.002). The predominant pattern of abnormality observed was ground-glass opacification (29.0%, n = 42), peripheral (57.5%, n = 42), and bilateral (35.3%, n = 35), which mainly involved the lower lobes (Fig 2). Most of the patients had stable radiological exams on follow up. Around 64.6% (n = 62) showed progression, half of them belonging to the more severe group (Table 3).
Fig 2

CXR’s of two different patients showing the most common abnormalities: Bilateral, peripheral ground glass opacities and consolidation.

Table 3

Radiological findings.

Radiological findings (CXR) upon admission
All patients (n = 150)Mild cases (n = 105)Moderate cases (n = 29)Severe/Intensive care unit cases (n = 16)P-value
Predominant finding
Normal72 (49.7)62 (60.2)7 (25.9)3 (20.0)0.000***
Ground glass opacity42 (29.0)21 (20.4)13 (48.1)8 (53.3)0.002*
Consolidation26 (17.9)16 (15.5)6 (22.2)4 (26.7)0.488
Linear atelectasis3 (2.1)3 (2.9)000.354
Diffusion reticular opacities1 (0.7)1 (1.0)000.795
Reticulation1 (0.7)0100.183
Distribution within the lobe
Central10 (13.7)6 (14.6)2 (10.0)2 (16.7)0.833
Diffuse21 (28.8)14 (34.1)4 (20.0)3 (25.0)0.494
Peripheral42 (57.5)21 (51.2)14 (70.0)7 (58.3)0.378
Distribution within the lung
Lower24 (32.9)12 (29.3)6 (30.0)6 (50.0)0.385
Lower middle22 (30.1)10 (24.4)9 (45.0)3 (25.0)0.236
Lower and middle and upper10 (13.7)8 (19.5)2 (10.0)00.089
Diffuse10 (13.7)6 (14.6)2 (10.0)2 (16.7)0.833
Peripheral2 (2.7)2 (4.9)000.309
Middle2 (2.7)2 (4.9)000.309
Upper1 (1.4)1 (2.4)000.559
Upper and middle1 (1.4)001 (8.3)0.159
No zonal predominance1 (1.4)01 (5.0)00.269
Laterality
Bilateral53 (35.3)27 (25.7)16 (55.2)10 (62.5)0.000***
Unilateral right12 (16.4)10 (24.4)2 (10.0)00.035*
Unilateral left8 (11.0)4 (9.8)2 (10.0)2 (16.7)0.805
Progression
Stable62 (64.6)49 (74.2)11 (57.9)2 (18.2)0.001**
Worsen34 (35.4)17 (25.8)8 (42.1)9 (81.8)

CXR: chest x-ray

CXR: chest x-ray

Recovery

Patients stayed at the hospital for a mean duration of 9.2 days (SD: 3.9). The duration of stay in hospital ranged from two days to 23 days. At the end of the follow-up period, a total of 94 patients (63.5%) recovered and 31.8% (n = 47) improved clinically, but their RT-PCR results were still positive. On the other hand, three patients (2.0%) did not fully recover and four patients (2.7%) deceased. There was no statistically significant difference based on age regarding the recovery or whether the patient was symptomatic or asymptomatic upon presentation at the hospital (p>0.05). The majority of the patients with mild cases improved or recovered; however, there was no statistically significant difference between cases of different severity and recovery rate (p>0.05) (Fig 3).
Fig 3

Recovery rates stratified by case severity.

Therapeutic management

Beside supportive care, there were three main types of therapies that were prescribed to the patients for the management of COVID-19, including: a) antiviral therapy, b) antibiotics, and c) antimalarial medications (Table 4). A total of 6 patients (4.0%) received the three classes of treatment on the first day of their admission. The most commonly used antibiotics were macrolide monotherapy (12.7%, n = 19) (azithromycin or clarithromycin), followed by macrolide and cephalosporin combination therapy (8.7%, n = 13).
Table 4

Initial treatment characteristics.

Treatment therapyFrequency (%)
Antiviral therapy
Combination of antiretroviral (lopinavir and ritonavir) and ribavirin14 (9.3)
Antimalarial therapy
Hydroxychloroquine25 (16.7)
Chloroquine15 (10.0)
Antibiotics therapy58 (38.7)

Discussion

To the best of our knowledge, this is the first and largest study to examine the clinical, radiological and therapeutic characteristics of COVID-19 in the Middle East region. We investigated clinical, radiological, and therapeutic characteristics of COVID-19 in 150 hospitalised patients in Saudi Arabia. We found that around 89.0% of the cases were either mild or moderate and only 11.0% were either severe or critical. Our finding showed that the clinical severity of COVID-19 was of a milder presentation compared to results from China [13], Italy [14] and the United States [15, 16]. These findings could be attributed to several factors including age and other demographic differences. The mean age in our study was 46.1 years (SD: 15.3), which was younger than the age reported in other studies. Several studies have reported poorer outcomes among older populations and patients with COVID-19 and comorbidities [17-19]. However, it is difficult to draw a causal inference and we urge for further studies to investigate this association. In addition, it is important to highlight that the majority of the Saudi Arabian population are younger than 44 years [20]. Male patients with COVID-19 were more prevalent in our study compared to females; this was also similar to previous reports which highlight that more males are infected with COVID-19 [1, 15]. These numbers could be attributed to sex-based immunological differences, or they could also be because of behavioural patterns such as smoking [21]. In addition, comorbidities are more prevalent in men, which could also be a reason for this difference [22]. However, there is a need for more research which focuses on gender differences and clinical outcomes with COVID-19. Our study highlighted that around 28.8% and 26.0% of the study population had hypertension (HTN) and DM; these results were similar to previous reports that investigated the clinical characteristics of COVID-19 (1). Patients with DM and hypertension have an increased risk of complications of COVID-19, including acute respiratory distress syndrome (ARDS) [23]; however, the mechanism of this remains un-investigated and it is unclear whether patients with uncontrolled blood pressure have poorer outcomes of COVID-19 compared to patients with controlled blood pressure. In addition, angiotensin-converting enzyme (ACE) inhibitors and angiotensin receptor blockers (ARBs) are two commonly prescribed medications for the management of HTN, and since SARS-CoV-2 binds to ACE2 in the lung, some theories have been raised about the benefits of these medications in the treatment of COVID-19 [24]. SARS-COV2 has been described to be similar to seasonal influenza, SARS-COV and MERS; this includes the fact that it is transmitted through respiratory droplets [25, 26]. In addition, SARS-COV2 has similar symptoms to SARS-COV and MERS, such as fever, cough, and shortness of breath. This was reported in our study and it was also in line with previous studies [6, 14]; however, SARS-COV2 has a higher case fatality rate in comparison to seasonal flu (0.1%), while it is also milder in comparison to other respiratory viruses, such as SARS-COV (9.5%) and MERS (34.3%) [27]. Besides this, COVID-19 is a highly infectious pathogen [28, 29], with some reports suggesting that half of the population of the United Kingdom (UK) has been infected without showing any symptoms or with having a mild course of the disease [30]. Our study demonstrated that around 31.3% of the study sample were asymptomatic and had mild disease. Mostly, these patients were identified through contact tracing and were isolated in the earlier course of the disease; whether this approach has any impact on the clinical course psychologically might need to be addressed in future studies. In addition, the majority of these patients had had contact with a confirmed COVID-19 patient, which may raise concerns regarding the mechanism and the underlying inflammatory response in these patients. More research is encouraged to investigate the characteristics of asymptomatic patients and if early detection and supportive treatment have a role in the clinical progression of the disease. In our study, and unlike previous reports, nearly half of the patients presented with normal CXR; most of them were asymptomatic or had a mild disease. Furthermore, normal CXR at presentation may have a prognostic rule as only a few of those patients progressed into more severe cases. On the other hand, the presence of ground glass opacity is linked with a more aggressive course. The patterns found in abnormal exams were similar to the previously published reports and findings where peripheral, bilateral ground glass opacification was observed [31]. Our study highlighted that around 26.7% of the patients received antimalarial treatment and around 9.0% received antiviral treatment. These medications have been suggested to have some beneficial effect to reduce the viral load and eliminate the disease; however, there are also uncertainties regarding their safety [32, 33]. In addition, there has been debate about their efficacy in the treatment of COVID-19, with several trials now in the pipeline for the testing of these medications [34]. To date, there is no treatment for COVID-19, and the main approach in the management of the disease is to provide supportive treatment and to control the symptoms, including with the use of mechanical ventilators for critical cases [35]. This study provides some important messages, including similarities with previous reports from other countries about the clinical picture of COVID-19. It also highlights the low mortality rate which may reflect the early response of the Saudi Government and the good care provided for people living in the kingdom. This study has some limitations. First, the number of patients included in the study was small. Second, the study population only included patients from a single-centre hospital in Saudi Arabia.

Conclusion

This case series provides clinical, radiological, and therapeutic characteristics of hospitalised patients with confirmed COVID-19 in Saudi Arabia. Our study demonstrates similar characteristics of COVID-19 to previously reported studies worldwide. 8 Jul 2020 PONE-D-20-17611 Clinical, Radiological and Therapeutic Characteristics of Patients with COVID-19 in Saudi Arabia PLOS ONE Dear Dr. Alwafi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 22 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. 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(Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is a descriptive study of 150 patients with COVID-19 in Mecca city. The importance of this study arises from the fact that it presents data from Mecca, a city that is visited by more than 10 million people from all over the world yearly. Additionally, it is the first study to report data about COVID-19 patients from the Middle East Region. I am not sure if the authors have made all data underlying the findings in their manuscript fully available. Reviewer #2: Coronavirus disease 2019 (COVID-19) is a rapidly spreading global pandemic. The clinical characteristics of COVID-19 has been reported; however, there are limited researches that investigated the clinical characteristics of COVID-19 in the Middle East. The aim of this study is to investigate the clinical, radiological and therapeutic characteristics of patients diagnosed with COVID19 in Saudi Arabia. This case series provides clinical, radiological and therapeutic characteristics of hospitalised patients with confirmed COVID-19 in Saudi Arabia. Comments: 1. Please provide some additional detail in the text about the antiviral, antibiotic, glucocorticoid and Chinese traditional therapies received by the patients. What were the most common regimens used, what was the timing of initiation of antiviral therapy relative to onset of symptoms, what proportion of patients received all three classes of treatment, and other relevant details. 2. The comments about natural history should be tempered further, especially acknowledging potential confounders. 3. Please define how patients were selected for inclusion in this analysis. Were there others the authors did not choose to include and if so how did they differ from the patients selected? How was laboratory confirmation of these cases achieved? Were samples sent to a central laboratory? What assays were used to confirm the cases? 4. The possible clinical perspective should be added 5. The following references should be indexed in the revision text. Petropoulos, F., & Makridakis, S. (2020). Forecasting the novel coronavirus COVID-19. PloS one, 15(3), e0231236. Clinical Features and Short-term Outcomes of 102 Patients with Corona Virus Disease 2019 in Wuhan, China. Clinical Infectious Diseases, DOI: 10.1093/cid/ciaa243/5814897. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Ahmed S. BaHammam Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. 19 Jul 2020 Manuscript ID; PONE-D-20-17611 Title: Clinical, Radiological and Therapeutic Characteristics of Patients with COVID-19 in Saudi Arabia Corresponding Author: Dr. Hassan Alwafi Dear Editor, Thank you for the opportunity to revise and resubmit our manuscript based on the reviewers’ comments. Please find below our itemized point-by-point responses to the journal requirements and reviewers’ comments. Answers are written in blue font and edited text has been highlighted with track changes in the marked version of the manuscript. Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1) Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf Thank you for your comment. We have addressed this comment. 2) In the ethics statement in the manuscript and in the online submission form, please provide additional information about the patient records used in your retrospective study. Specifically, please ensure that you have discussed whether all data were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients provided informed written consent to have data from their medical records used in research, please include this information. Thank you for your comment. This study was approved by the institutional ethics board at the Ministry of Health in Saudi Arabia (No. H-02-K-076-0420-286). Patients were informed that their clinical data will be used for clinical or research purposes with keeping all their personal information confidential. The need for informed consent was waived by the ethics committee. We have now added this in the methods section in the main manuscript, please see lines (123 and 124). 3) We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service. Thank you for your suggestion. We have proofread the manuscript. Upon resubmission, please provide the following: • The name of the colleague or the details of the professional service that edited your manuscript London Proofreaders Details as follow; Pop Brixton, 49 Brixton Station Rd, Brixton, London SW9 8PQ, United Kingdom • A copy of your manuscript showing your changes by either highlighting them or using track changes (uploaded as a *supporting information* file). • A clean copy of the edited manuscript (uploaded as the new *manuscript* file) • 4) We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. All relevant data are within the manuscript and its supporting information files • In your revised cover letter, please address the following prompts: • a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. • b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. • We will update your Data Availability statement on your behalf to reflect the information you provide. • 5) PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ We have now added the ORCID ID of the corresponding author in the online system. PONE-D-20-17611 Clinical, Radiological and Therapeutic Characteristics of Patients with COVID-19 in Saudi Arabia Reviewer #1: This is a descriptive study of 150 patients with COVID-19 in Mecca city. The importance of this study arises from the fact that it presents data from Mecca, a city that is visited by more than 10 million people from all over the world yearly. Additionally, it is the first study to report data about COVID-19 patients from the Middle East Region. I am not sure if the authors have made all data underlying the findings in their manuscript fully available. Thank you for your constructive comment. We agree with the author that Mecca city is visited by a large number of people every year for religious purposes. In addition, it is the third largest city population in Saudi Arabia (1). However, our study describe hospitalised data from a single centre (Al-Noor hospital) and we did not have access to any other hospital or nationwide data. Our data were collected from 12th of March until 31 of March, while the first case of COVID-19 reported in Saudi Arabia was in 2nd of March 2020 (2). In addition, during the early phases of the pandemic, the Saudi government were requesting patients who test positive for COVID-19 and who are stable to be quarantined in hotels and not to be admitted to hospitals. Therefore, it is reasonable to assume the small number of patients included in the study. Reviewer #2: Coronavirus disease 2019 (COVID-19) is a rapidly spreading global pandemic. The clinical characteristics of COVID-19 has been reported; however, there are limited researches that investigated the clinical characteristics of COVID-19 in the Middle East. The aim of this study is to investigate the clinical, radiological and therapeutic characteristics of patients diagnosed with COVID19 in Saudi Arabia. This case series provides clinical, radiological and therapeutic characteristics of hospitalised patients with confirmed COVID-19 in Saudi Arabia. Comments: 1. Please provide some additional detail in the text about the antiviral, antibiotic, glucocorticoid and Chinese traditional therapies received by the patients. What were the most common regimens used, what was the timing of initiation of antiviral therapy relative to onset of symptoms, what proportion of patients received all three classes of treatment, and other relevant details. Thank you for your suggestion. We have now addressed this comment, please see lines (189 - 192) Regarding initiation of antiviral. Our aim in the study was to describe and endorse the different therapeutic options that were used in treating the patients and these were according to the Saudi Ministry of Health (MOH) protocol during the time of data collection. Patients were given antiviral treatment if they had COVID-19 symptoms for less than 10 days. 2. The comments about natural history should be tempered further, especially acknowledging potential confounders. Thank you for your comment. We agree with the author that more details about the history of patients is important. However, we did not have access to further details except those in the medical records of the patients. In addition, it is important to highlight that due to the nature of this descriptive study we assume that any missing patient’s history data will have a significant impact of the conclusion of this study, as there are no correlation of association being measured. 3. Please define how patients were selected for inclusion in this analysis. Were there others the authors did not choose to include and if so how did they differ from the patients selected? How was laboratory confirmation of these cases achieved? Were samples sent to a central laboratory? What assays were used to confirm the cases? Thank you for your comment. All patients who were hospitalized between 12th of March and 31st of March and tested positive for COVID-19 through RT-PCR nasopharyngeal swabs were included in this study. The laboratory tests for COVID-19 were processed and validated in the regional lab. We have now added this in the methods section in the main manuscript, please see lines (95 and 96). 4. The possible clinical perspective should be added Thank you for suggestion. This study provides some important messages, this includes a similarity with previous reports from other countries about the clinical picture of COVID-19. It also highlights the low mortality rate which may reflect the early response of the Saudi Government and the good care provided for people living in the kingdom. We have added this in the discussion section in the main manuscript, please see lines (253 - 256). 5. The following references should be indexed in the revision text. Petropoulos, F., & Makridakis, S. (2020). Forecasting the novel coronavirus COVID-19. PloS one, 15(3), e0231236. Clinical Features and Short-term Outcomes of 102 Patients with Corona Virus Disease 2019 in Wuhan, China. Clinical Infectious Diseases, DOI: 10.1093/cid/ciaa243/5814897. We have now added the above mentioned references. References: 1. Statistics GAf. Statistical Yearbook of 2016 2016 [Available from: https://www.stats.gov.sa/en/5305. 2. MOH. COVID 19 Dashboard: Saudi Arabia 2020 [Available from: https://covid19.moh.gov.sa/. Submitted filename: Response to Reviewers.docx Click here for additional data file. 22 Jul 2020 Clinical, Radiological and Therapeutic Characteristics of Patients with COVID-19 in Saudi Arabia PONE-D-20-17611R1 Dear Dr. Alwafi, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Wen-Jun Tu Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments:
  25 in total

1.  Covid-19: death rate is 0.66% and increases with age, study estimates.

Authors:  Elisabeth Mahase
Journal:  BMJ       Date:  2020-04-01

2.  Chloroquine and hydroxychloroquine in covid-19.

Authors:  Robin E Ferner; Jeffrey K Aronson
Journal:  BMJ       Date:  2020-04-08

3.  Prevalence of Intestinal Parasites among Patients of Al-Noor Specialist Hospital, Makkah, Saudi Arabia.

Authors:  Dina Am Zaglool; Yousif Aw Khodari; Zohair J Gazzaz; Khalid O Dhafar; Hani As Shaker; Mian U Farooq
Journal:  Oman Med J       Date:  2011-05

Review 4.  The reproductive number of COVID-19 is higher compared to SARS coronavirus.

Authors:  Ying Liu; Albert A Gayle; Annelies Wilder-Smith; Joacim Rocklöv
Journal:  J Travel Med       Date:  2020-03-13       Impact factor: 8.490

5.  Clinical Features and Short-term Outcomes of 102 Patients with Coronavirus Disease 2019 in Wuhan, China.

Authors:  Jianlei Cao; Wen-Jun Tu; Wenlin Cheng; Lei Yu; Ya-Kun Liu; Xiaorong Hu; Qiang Liu
Journal:  Clin Infect Dis       Date:  2020-07-28       Impact factor: 9.079

6.  Estimation of the reproductive number of novel coronavirus (COVID-19) and the probable outbreak size on the Diamond Princess cruise ship: A data-driven analysis.

Authors:  Sheng Zhang; MengYuan Diao; Wenbo Yu; Lei Pei; Zhaofen Lin; Dechang Chen
Journal:  Int J Infect Dis       Date:  2020-02-22       Impact factor: 3.623

7.  The gendered dimensions of COVID-19.

Authors: 
Journal:  Lancet       Date:  2020-04-11       Impact factor: 79.321

8.  Forecasting the novel coronavirus COVID-19.

Authors:  Fotios Petropoulos; Spyros Makridakis
Journal:  PLoS One       Date:  2020-03-31       Impact factor: 3.240

9.  The many estimates of the COVID-19 case fatality rate.

Authors:  Dimple D Rajgor; Meng Har Lee; Sophia Archuleta; Natasha Bagdasarian; Swee Chye Quek
Journal:  Lancet Infect Dis       Date:  2020-03-27       Impact factor: 25.071

10.  COVID-19: preparing for superspreader potential among Umrah pilgrims to Saudi Arabia.

Authors:  Shahul H Ebrahim; Ziad A Memish
Journal:  Lancet       Date:  2020-02-27       Impact factor: 79.321

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  25 in total

1.  Assessment of caregiver willingness to vaccinate their children against COVID-19 in Saudi Arabia: a cross-sectional study.

Authors:  Mohammed Samannodi; Hassan Alwafi; Abdallah Y Naser; Renan Alabbasi; Nouf Alsahaf; Rawan Alosaimy; Faisal Minshawi; Mohammad Almatrafi; Rami Khalifa; Rakan Ekram; Emad Salawati
Journal:  Hum Vaccin Immunother       Date:  2021-12-02       Impact factor: 3.452

2.  Hypertension, diabetes mellitus, and cerebrovascular disease predispose to a more severe outcome of COVID-19.

Authors:  Kamleshun Ramphul; Petras Lohana; Yogeshwaree Ramphul; Yun Park; Stephanie Mejias; Balkiranjit Kaur Dhillon; Shaheen Sombans; Renuka Verma
Journal:  Arch Med Sci Atheroscler Dis       Date:  2021-04-12

3.  New disease and old threats: A case series of COVID-19 and tuberculosis coinfection in Saudi Arabia.

Authors:  Mohammed Shabrawishi; Abdullmoin AlQarni; Maher Ghazawi; Baraa Melibari; Tebra Baljoon; Hassan Alwafi; Mohammed Samannodi
Journal:  Clin Case Rep       Date:  2021-05-24

4.  Asthma in Adult Patients with COVID-19. Prevalence and Risk of Severe Disease.

Authors:  Paul D Terry; R Eric Heidel; Rajiv Dhand
Journal:  Am J Respir Crit Care Med       Date:  2021-04-01       Impact factor: 21.405

5.  Predictors of Length of Hospital Stay, Mortality, and Outcomes Among Hospitalised COVID-19 Patients in Saudi Arabia: A Cross-Sectional Study.

Authors:  Hassan Alwafi; Abdallah Y Naser; Sultan Qanash; Ahmad S Brinji; Maher A Ghazawi; Basil Alotaibi; Ahmad Alghamdi; Aisha Alrhmani; Reham Fatehaldin; Ali Alelyani; Abdulrhman Basfar; Abdulaziz AlBarakati; Ghaidaa F Alsharif; Elaf F Obaid; Mohammed Shabrawishi
Journal:  J Multidiscip Healthc       Date:  2021-04-15

6.  Community Knowledge of and Attitudes towards COVID-19 Prevention Techniques in Saudi Arabia: A Cross-Sectional Study.

Authors:  Amal Khalil AbuAlhommos; Fatimah Essa Alhadab; May Mohammed Almajhad; Rahmah Almutawaa; Sara Taleb Alabdulkareem
Journal:  Int J Environ Res Public Health       Date:  2021-12-03       Impact factor: 3.390

7.  COVID-19 Vaccine Acceptability Among Women Who are Pregnant or Planning for Pregnancy in Saudi Arabia: A Cross-Sectional Study.

Authors:  Mohammed Samannodi
Journal:  Patient Prefer Adherence       Date:  2021-11-23       Impact factor: 2.711

8.  Humoral immune responses in hospitalized COVID-19 patients.

Authors:  Waleed H Mahallawi
Journal:  Saudi J Biol Sci       Date:  2021-04-20       Impact factor: 4.219

Review 9.  SARS-CoV-2 plays a pivotal role in inducing hyperthyroidism of Graves' disease.

Authors:  Avaniyapuram Kannan Murugan; Ali S Alzahrani
Journal:  Endocrine       Date:  2021-06-09       Impact factor: 3.633

10.  Clinical characteristics and treatment outcomes of severe (ICU) COVID-19 patients in Saudi Arabia: A single centre study.

Authors:  Saleh Alghamdi
Journal:  Saudi Pharm J       Date:  2021-08-04       Impact factor: 4.330

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