| Literature DB >> 32751372 |
Rongping Liu1,2, Hao Yan3, Jinzhang Jiang1, Jiahe Li1, Xing Liang1, Dengfeng Yang4, Lixia Pan2, Tisan Xie3, Zhen Ma1.
Abstract
Six new zinc(II) complexes were prepared by the reaction ofEntities:
Keywords: CT-DNA binding; antiproliferative activity; fluorescence quenching; molecular docking; zinc (II) complexes
Mesh:
Substances:
Year: 2020 PMID: 32751372 PMCID: PMC7436059 DOI: 10.3390/molecules25153459
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1The compounds used in the experiment.
Figure 1Thermal ellipsoid plot, drawn at the 50% probability level, of [ZnBr2L1] (1) with atomic numbering scheme. Selected bond lengths (Å) and angles (°): Zn(1)-N(2) 2.099(2), Zn(1)-N(1) 2.187(2), Zn(1)-N(3) 2.215(2), Zn(1)-Br(2) 2.4065(4), Zn(1)-Br(1) 2.4143(4), N(2)-Zn(1)-N(1) 74.22(8) N(2)-Zn(1)-N(3) 74.27(8), N(1)-Zn(1)-N(3) 146.24(8), N(2)-Zn(1)-Br(2) 138.77(6), N(1)-Zn(1)-Br(2) 98.90(6) N(3)-Zn(1)-Br(2) 96.78(5), N(2)-Zn(1)-Br(1) 108.69(6), N(1)-Zn(1)-Br(1) 97.22(6) N(3)-Zn(1)-Br(1) 104.06(6), Br(2)-Zn(1)-Br(1) 112.512(17).
Figure 2Solid state emission spectra (excitation at 300 nm) of complexes 1–6 at room temperature.
Figure 3The UV-vis spectra of complexes (a) 1 and (b) 3 in PBS buffer solution over a period of 72 h.
Figure 4The curves of antitumor activities of compounds 1–6 against (a) Eca-109, (b) A549 and (c) Bel-7402 cell line.
IC50 of complexes against human cancer cells in vitro.
| Compound | Eca-109 | A549 | Bel-7042 | |||
|---|---|---|---|---|---|---|
| IC50 (μM) | 95% Confidence | IC50 (μM) | 95% Confidence | IC50 (μM) | 95% Confidence | |
| Intervals (μM) | Intervals (μM) | Intervals (μM) | ||||
|
| 0.079 | 0.0533–0.1188 | 0.309 | 0.6419–0.8715 | 0.358 | 0.3468–0.7850 |
|
| 0.066 | 0.0464–0.0946 | 0.290 | 0.3822–0.6072 | 0.331 | 0.2434–0.5271 |
|
| 0.169 | 0.1246–0.2311 | 0.482 | 0.2465–0.3824 | 0.414 | 0.2817–0.6089 |
|
| 0.075 | 0.0503–0.1144 | 0.307 | 0.2501–0.3819 | 0.397 | 0.2408–0.6553 |
|
| 0.197 | 0.1449–0.2693 | 0.748 | 0.2072–0.4068 | 0.616 | 0.3681–1.032 |
|
| 0.146 | 0.1208–0.1780 | 0.945 | 0.6751–0.9521 | 0.522 | 0.2533–0.4325 |
| cisplatin | 5.465 | 4.982–5.994 | 11.99 | 10.79–13.32 | 3.088 | 2.856–3.340 |
Figure 5(a) Microscopic photographs of Eca-109 cancer cells treated with different concentrations of compound 1 and control photographs (C for blank control group, C1 for 2.5 μM cisplatin, C2 for 20 μM cisplatin). (b) The cell viability of compounds 1–6 against RAW264.7.
Figure 6(a) Fluorescence emission spectra of 1.6 μM BSA in a Tris-HCl buffer (pH = 7.2) solution with series concentration of compounds 4 and 6, and (b) curves for the Stern–Volmer equation as the insets.
Quenching constants and binding constants of compounds 1–6 with BSA.
| Compound |
|
| |||
|---|---|---|---|---|---|
|
| 1.76 × 105 | 1.76 × 1013 | 4.47 × 103 | 0.72 | 0.9783 |
|
| 1.76 × 105 | 1.76 × 1013 | 1.80 × 104 | 0.83 | 0.9989 |
|
| 1.15 × 105 | 1.15 × 1013 | 2.95 × 105 | 1.07 | 0.9919 |
|
| 1.63 × 105 | 1.63 × 1013 | 3.80 × 105 | 1.08 | 0.9943 |
|
| 4.63 × 104 | 4.63 × 1012 | 1.07 × 104 | 0.87 | 0.9946 |
|
| 7.67 × 104 | 7.67 × 1012 | 2.24 × 104 | 0.89 | 0.9960 |
The R is the linear correlated coefficient for the K values.
Figure 7Absorption spectra of 20 μM of compounds 1–6 in Tris-HCl buffer.
Figure 8Docking conformation of complex 1 to (a) BSA and (b) amino acid residues surrounding 1.
Docking energy of compounds 1–6 to DNA. Quenching constants and binding constants of compounds 1–6 to BSA.
| Compound | BSA | DNA(4JD8) |
|---|---|---|
|
| −7.69 | −7.90 |
|
| −8.28 | −8.65 |
|
| −7.00 | −8.42 |
|
| −6.99 | −8.76 |
|
| −7.26 | −8.51 |
|
| −7.79 | −8.78 |
Figure 9Absorption spectra of 20 μM of compounds (a) 1 and (b) 3 in a Tris-HCl buffer (pH = 7.2) solution with series concentrations of CT-DNA. The plots of A0/(A − A0) versus the concentration of CT-DNA are shown as the insets.
Binding constants of compounds 1–6 with CT-DNA.
| Compound |
| |
|---|---|---|
|
| 2.79 × 103 | 0.9940 |
|
| 2.47 × 103 | 0.9906 |
|
| 1.90 × 104 | 0.9900 |
|
| 2.15 × 104 | 0.9924 |
|
| 6.63 × 104 | 0.9931 |
|
| 6.69 × 104 | 0.9974 |
Figure 10CD spectra of compounds (a) 1 and (b) 3 to CT-DNA at different concentration ratios.
Figure 11Docking conformation of complex 1 to DNA.
Crystal data for compounds 1–6.
| Compound | 1 | 2 | 3 | 4 | 5 | 6 |
|---|---|---|---|---|---|---|
| Empirical formula | C44H38Br4N6O6S2Zn2 | C24H23I2N3O3S2Zn | C22H17Br2N3OZn | C22H17I2N3OZn | C22H17Br2N3Zn | C22H17I2N3Zn |
| Formula weight | 1261.3 | 784.74 | 564.58 | 658.56 | 548.58 | 642.56 |
| Temperature | 293(2) K | 293(2) K | 293(2) K | 571(2) K | 571(2) K | 571(2) K |
| Crystal system | Monoclinic | Orthorhombic | Monoclinic | Monoclinic | Monoclinic | Monoclinic |
| space group | ||||||
| 13.2530(5) | 11.748(2) | 8.2757(2) | 8.8978(2) | 8.23930(10) | 8.1062(2) | |
| 14.4141(5) | 20.209(3) | 14.8951(5) | 15.9409(3) | 14.9859(2) | 15.5081(3) | |
| 24.6133(9) | 23.075(4) | 17.1200(6) | 15.8601(3) | 16.7323(3) | 17.3032(4) | |
| 90 | 90 | 90 | 90 | 90 | 90 | |
| 95.604(3) | 90 | 98.939(2) | 105.1540(10) | 97.2180(10) | 96.9060(10) | |
| 90 | 90 | 90 | 90 | 90 | 90 | |
| Volume (Ǻ3) | 4679.4(3) | 5478.7(16) | 2084.71(11) | 2171.35(8) | 2049.62(5) | 2159.43(8) |
|
| 4 | 8 | 4 | 4 | 4 | 4 |
| Calculated density (Mg/m3) | 1.79 | 1.903 | 1.799 | 2.015 | 1.778 | 1.976 |
| Absorption coefficient (mm−1) | 4.584 | 3.334 | 5.03 | 3.993 | 5.11 | 4.009 |
| 2496 | 3040 | 1112 | 1256 | 1080 | 1224 | |
| Crystal size (mm−1) | 0.36 × 0.30 × 0.22 | 0.49 × 0.11 × 0.09 | 0.39 × 0.36 × 0.30 | 0.48 × 0.43 × 0.40 | 0.39 × 0.30 × 0.21 | 0.26 × 0.25 × 0.18 |
| 2.95, 27.50 | 2.80, 29.69 | 2.73, 27.15 | 1.84, 27.12 | 5.52, 26.63 | 2.37, 27.19 | |
| Index range | −16→17 | −16→17 | −10→10 | −11→11 | −9→10 | −10→10 |
|
| −18→15 | −27→27 | −19→15 | −19→20 | −13→18 | −19→17 |
|
| −31→30 | −31→29 | −14→21 | −20→20 | −20→21 | −22→18 |
| Reflections collected/unique | 13958/5198 | 74225/14185 | 14640/4523 | 29741/4806 | 9325/4150 | 18433/4788 |
| [ | [ | [ | [ | [ | [ | |
| Data/restraints/parameters | 5198/0/290 | 14185/0/631 | 4523/0/262 | 4806/0/262 | 4150/0/253 | 4788/0/253 |
| Goodness-of-fit on | 1.012 | 1.021 | 1.017 | 1.013 | 0.943 | 0.994 |
| Final | ||||||
| Largest diff. peak and hole ( | 0.939 and −0.562 | 1.580 and −0.806 | 0.703 and −0.448 | 0.395 and −0.920 | 0.965 and −0.565 | 0.807 and −0.822 |
| CCDC number | 1969820 | 1969821 | 1969822 | 1969823 | 1969824 | 1969825 |