Literature DB >> 32750890

Barapost: Binning of Nucleotide Sequences According to Taxonomic Annotation.

Maxim A Sikolenko, Leonid N Valentovich.   

Abstract

Contemporary sequencing technologies, Oxford Nanopore in particular, provide a way to sequence multiple samples during single run using molecular barcodes. Specific circumstances, however, can make barcoding undesirable or unaffordable. Here, we introduce Barapost: a command-line toolkit that demultiplexes long nucleotide sequences relying on taxonomic annotation instead of barcoding.

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Year:  2021        PMID: 32750890     DOI: 10.1109/TCBB.2020.3009780

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  2 in total

1.  Complete Genome Sequence of Pseudomonas taiwanensis WRS8, a Plant Growth-Promoting and Biotite-Weathering Strain.

Authors:  Cheng Cheng; Qi Wang; Xuewei Li; Yuanyuan Liu
Journal:  Microbiol Resour Announc       Date:  2021-05-06

2.  Amplicon_sorter: A tool for reference-free amplicon sorting based on sequence similarity and for building consensus sequences.

Authors:  Andy R Vierstraete; Bart P Braeckman
Journal:  Ecol Evol       Date:  2022-03-01       Impact factor: 2.912

  2 in total

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